Wall clock time and date at job start Mon Mar 30 2020 02:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 N 1.46496 * 109.47484 * 295.00296 * 4 2 1 6 6 C 1.34946 * 126.04407 * 124.71864 * 5 4 2 7 7 C 1.35308 * 107.74924 * 179.84189 * 6 5 4 8 8 C 1.50698 * 126.04005 * 180.15993 * 7 6 5 9 9 H 1.08997 * 109.47509 * 340.27866 * 8 7 6 10 10 O 1.42905 * 109.47343 * 220.27964 * 8 7 6 11 11 C 1.50698 * 109.47449 * 100.28332 * 8 7 6 12 12 H 1.07999 * 119.99684 * 359.97438 * 11 8 7 13 13 C 1.37881 * 120.00171 * 180.02562 * 11 8 7 14 14 N 1.31509 * 119.99897 * 359.97438 * 13 11 8 15 15 Si 1.86802 * 119.99845 * 179.97438 * 13 11 8 16 16 H 1.48503 * 109.46564 * 90.00130 * 15 13 11 17 17 H 1.48500 * 109.47144 * 209.99918 * 15 13 11 18 18 H 1.48498 * 109.47497 * 330.00201 * 15 13 11 19 19 C 1.39867 * 107.92274 * 0.41714 * 7 6 5 20 20 N 1.30846 * 108.20091 * 359.74194 * 19 7 6 21 21 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 22 22 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 25 25 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 26 26 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 28 28 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 29 29 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 30 30 H 1.08009 * 126.12123 * 359.97438 * 6 5 4 31 31 H 0.96703 * 113.99883 * 300.00081 * 10 8 7 32 32 H 0.97003 * 120.00215 * 179.97438 * 14 13 11 33 33 H 1.08000 * 125.90290 * 179.71372 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6523 -2.1327 -1.1907 6 6 0.9537 -2.8039 -2.1302 7 6 0.8070 -4.0792 -1.7024 8 6 0.0937 -5.1845 -2.4377 9 1 -0.5783 -4.7529 -3.1793 10 8 -0.6607 -5.9653 -1.5085 11 6 1.1051 -6.0634 -3.1274 12 1 2.1590 -5.8433 -3.0421 13 6 0.6849 -7.1478 -3.8680 14 7 -0.5985 -7.4154 -3.9721 15 14 1.9386 -8.2368 -4.7235 16 1 2.3467 -9.3338 -3.8095 17 1 1.3363 -8.8142 -5.9519 18 1 3.1293 -7.4282 -5.0890 19 6 1.4292 -4.1889 -0.4546 20 7 1.9363 -3.0227 -0.1468 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5139 0.8900 25 1 1.6768 1.9562 0.8901 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6053 -0.2617 -2.1370 29 1 3.1263 -0.6443 -1.2952 30 1 0.5806 -2.3966 -3.0583 31 1 -0.1257 -6.3806 -0.8182 32 1 -0.8941 -8.1781 -4.4935 33 1 1.4817 -5.0819 0.1506 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535766682.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:23 Heat of formation + Delta-G solvation = -9.328313 kcal Electronic energy + Delta-G solvation = -15279.675074 eV Core-core repulsion = 12726.898407 eV Total energy + Delta-G solvation = -2552.776667 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.01068 -37.80548 -36.94772 -34.20715 -32.71706 -31.52670 -28.57474 -28.06746 -26.89089 -24.39474 -22.27841 -21.38353 -20.33744 -18.96141 -18.05158 -16.63982 -16.52248 -16.15426 -15.39474 -15.37501 -14.97280 -14.69626 -14.32741 -13.77548 -13.43351 -13.28629 -13.11253 -12.93008 -12.86750 -12.77130 -12.21168 -12.04845 -11.95215 -11.92216 -11.53882 -11.02148 -10.70078 -10.26184 -10.13732 -9.07165 -8.05919 -6.32317 1.07446 1.42920 1.43328 1.54171 1.77772 2.04579 2.46092 3.17210 3.55805 3.88283 4.00333 4.10620 4.19211 4.40676 4.46290 4.57036 4.66437 4.76725 4.80553 4.86683 4.95939 5.01066 5.18387 5.18887 5.34348 5.40996 5.68853 5.78402 5.91241 6.15917 6.32191 6.77737 6.88356 7.38627 7.60350 8.96010 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.050972 B = 0.006071 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 549.193507 B = 4611.235663 C = 4803.728424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.137 4.137 4 C 0.130 3.870 5 N -0.369 5.369 6 C 0.043 3.957 7 C -0.249 4.249 8 C 0.299 3.701 9 H 0.028 0.972 10 O -0.578 6.578 11 C -0.566 4.566 12 H 0.049 0.951 13 C 0.028 3.972 14 N -0.901 5.901 15 Si 0.957 3.043 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.270 1.270 19 C 0.042 3.958 20 N -0.320 5.320 21 H 0.064 0.936 22 H 0.068 0.932 23 H 0.023 0.977 24 H 0.062 0.938 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.089 0.911 30 H 0.187 0.813 31 H 0.356 0.644 32 H 0.262 0.738 33 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.966 15.292 5.034 16.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.195 4.195 4 C 0.010 3.990 5 N -0.152 5.152 6 C -0.103 4.103 7 C -0.260 4.260 8 C 0.240 3.760 9 H 0.046 0.954 10 O -0.382 6.382 11 C -0.604 4.604 12 H 0.068 0.932 13 C -0.174 4.174 14 N -0.538 5.538 15 Si 0.782 3.218 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.194 1.194 19 C -0.143 4.143 20 N -0.142 5.142 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.042 0.958 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.090 0.910 28 H 0.135 0.865 29 H 0.107 0.893 30 H 0.204 0.796 31 H 0.201 0.799 32 H 0.071 0.929 33 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 5.029 16.223 5.425 17.830 hybrid contribution 0.364 -1.630 -0.826 1.864 sum 5.393 14.593 4.599 16.223 Atomic orbital electron populations 1.21780 0.95058 1.00428 1.02734 1.21356 0.96241 0.97545 0.97053 1.21737 1.01524 0.93020 1.03219 1.22142 1.01510 0.74255 1.01060 1.48714 1.42685 1.09993 1.13832 1.22461 0.98700 0.92629 0.96463 1.21309 1.09463 0.96672 0.98561 1.17450 0.88297 0.84968 0.85283 0.95383 1.86498 1.39157 1.68994 1.43541 1.21890 0.93382 1.12584 1.32594 0.93237 1.25846 0.96727 0.98717 0.96095 1.70199 1.15504 1.28270 1.39842 0.85606 0.79184 0.78946 0.78089 1.19888 1.20693 1.19445 1.23727 0.97575 0.96529 0.96437 1.77061 1.25176 1.00365 1.11628 0.91661 0.91324 0.95754 0.91973 0.91513 0.91697 0.91016 0.86538 0.89322 0.79597 0.79851 0.92947 0.79857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 9.08 71.98 0.65 -2.42 16 2 C -0.10 -2.07 3.00 -10.79 -0.03 -2.10 16 3 C -0.14 -1.82 9.19 71.98 0.66 -1.16 16 4 C 0.13 2.89 5.90 86.38 0.51 3.40 16 5 N -0.37 -12.07 3.13 -348.07 -1.09 -13.16 16 6 C 0.04 1.59 11.36 83.54 0.95 2.54 16 7 C -0.25 -10.93 5.05 -20.15 -0.10 -11.03 16 8 C 0.30 15.69 3.28 29.10 0.10 15.78 16 9 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 10 O -0.58 -30.89 12.65 -148.98 -1.89 -32.78 16 11 C -0.57 -31.63 8.75 25.60 0.22 -31.41 16 12 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 13 C 0.03 1.58 5.40 84.66 0.46 2.04 16 14 N -0.90 -53.89 12.84 21.45 0.28 -53.62 16 15 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 16 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 18 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 19 C 0.04 1.70 11.44 85.23 0.98 2.67 16 20 N -0.32 -12.07 12.34 -57.02 -0.70 -12.77 16 21 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.02 0.68 7.75 -2.39 -0.02 0.66 16 24 H 0.06 1.54 8.05 -2.39 -0.02 1.52 16 25 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.12 1.97 8.07 -2.39 -0.02 1.95 16 29 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 30 H 0.19 5.82 8.06 -2.91 -0.02 5.80 16 31 H 0.36 16.72 8.35 -74.05 -0.62 16.10 16 32 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 33 H 0.18 6.70 7.76 -2.91 -0.02 6.68 16 Total: -1.00 -68.73 285.34 3.48 -65.24 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.47 Total: 22.93 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 4.39 Total: -21.68 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -1.52 Total: -79.55 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -1.89 Total: -32.78 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -68.73 3.48 -65.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535766682.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.916 kcal (2) G-P(sol) polarization free energy of solvation -68.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds