Wall clock time and date at job start Mon Mar 30 2020 02:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47168 * 2 1 4 4 C 1.52996 * 109.47451 * 120.00152 * 2 1 3 5 5 N 1.46505 * 109.47238 * 64.99616 * 4 2 1 6 6 C 1.34946 * 126.03722 * 124.99741 * 5 4 2 7 7 C 1.35312 * 107.74687 * 180.02562 * 6 5 4 8 8 C 1.39865 * 107.91958 * 0.02562 * 7 6 5 9 9 C 1.50707 * 125.89710 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.46649 * 244.99441 * 9 8 7 11 11 O 1.42895 * 109.47045 * 4.99793 * 9 8 7 12 12 C 1.50695 * 109.47014 * 124.99898 * 9 8 7 13 13 H 1.08004 * 120.00546 * 0.27454 * 12 9 8 14 14 C 1.37885 * 119.99721 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00035 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99853 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47093 * 60.00328 * 16 14 12 18 18 H 1.48495 * 109.47002 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47239 * 300.00048 * 16 14 12 20 20 N 1.30840 * 108.20559 * 0.26034 * 8 7 6 21 21 H 1.08998 * 109.47113 * 300.00076 * 1 2 3 22 22 H 1.09002 * 109.47340 * 59.99811 * 1 2 3 23 23 H 1.08996 * 109.47332 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47572 * 240.00192 * 2 1 3 25 25 H 1.08999 * 109.47361 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47068 * 300.00185 * 3 2 1 27 27 H 1.08999 * 109.46897 * 60.00434 * 3 2 1 28 28 H 1.09001 * 109.46942 * 305.00430 * 4 2 1 29 29 H 1.08998 * 109.47785 * 184.99871 * 4 2 1 30 30 H 1.08008 * 126.12545 * 359.97394 * 6 5 4 31 31 H 1.08004 * 126.03816 * 180.02562 * 7 6 5 32 32 H 0.96696 * 114.00520 * 60.00051 * 11 9 8 33 33 H 0.97000 * 119.99706 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 2.4860 -3.1897 1.2868 7 6 1.7400 -4.3140 1.1850 8 6 0.4049 -3.9312 1.0203 9 6 -0.7692 -4.8635 0.8668 10 1 -1.2033 -4.7406 -0.1254 11 8 -0.3301 -6.2134 1.0308 12 6 -1.8060 -4.5420 1.9120 13 1 -1.6342 -3.7396 2.6143 14 6 -2.9768 -5.2681 1.9680 15 7 -3.1884 -6.2417 1.1095 16 14 -4.2617 -4.8700 3.2641 17 1 -4.7176 -3.4670 3.0946 18 1 -5.4186 -5.7886 3.1127 19 1 -3.6701 -5.0385 4.6158 20 7 0.3519 -2.6239 1.0175 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6053 -0.2618 2.1369 29 1 3.1263 -0.6444 1.2951 30 1 3.5569 -3.1459 1.4203 31 1 2.1102 -5.3279 1.2240 32 1 0.0680 -6.3956 1.8930 33 1 -4.0119 -6.7528 1.1491 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001535767972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:25 Heat of formation + Delta-G solvation = 17.880250 kcal Electronic energy + Delta-G solvation = -15437.822878 eV Core-core repulsion = 12886.226063 eV Total energy + Delta-G solvation = -2551.596815 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.48785 -36.43413 -35.29981 -32.09028 -31.45105 -29.36731 -27.40359 -26.91165 -25.43284 -22.77053 -20.57495 -20.06740 -18.88981 -16.97493 -16.61590 -15.15051 -14.71492 -14.53403 -14.23402 -13.58237 -13.42195 -13.07751 -12.91518 -12.48331 -12.15283 -12.08910 -11.82911 -11.20303 -11.11567 -10.85012 -10.82950 -10.80609 -10.67932 -10.10943 -9.49520 -9.30605 -8.73680 -8.40339 -8.16367 -7.78939 -5.95189 -4.11039 2.56952 3.10466 3.35526 3.39336 3.42421 3.71314 4.47220 4.67345 4.79811 5.03170 5.24546 5.29102 5.36239 5.42997 5.57090 5.74797 5.80431 5.94741 5.98073 6.17285 6.22955 6.37481 6.40560 6.53595 6.77310 6.88893 7.54117 7.63819 7.71748 7.91610 8.19516 8.58212 8.93287 9.39206 9.62766 11.09221 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.030895 B = 0.007611 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.075712 B = 3677.867829 C = 4251.046240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.105 4.105 3 C -0.144 4.144 4 C 0.143 3.857 5 N -0.389 5.389 6 C 0.031 3.969 7 C -0.266 4.266 8 C 0.077 3.923 9 C 0.299 3.701 10 H 0.074 0.926 11 O -0.556 6.556 12 C -0.552 4.552 13 H 0.058 0.942 14 C 0.078 3.922 15 N -0.863 5.863 16 Si 0.893 3.107 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 N -0.282 5.282 21 H 0.049 0.951 22 H 0.045 0.955 23 H 0.098 0.902 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.160 0.840 31 H 0.141 0.859 32 H 0.349 0.651 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.281 10.455 -0.195 15.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.125 4.125 3 C -0.202 4.202 4 C 0.021 3.979 5 N -0.172 5.172 6 C -0.114 4.114 7 C -0.295 4.295 8 C -0.090 4.090 9 C 0.239 3.761 10 H 0.092 0.908 11 O -0.357 6.357 12 C -0.590 4.590 13 H 0.077 0.923 14 C -0.128 4.128 15 N -0.499 5.499 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.202 1.202 20 N -0.104 5.104 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.117 0.883 24 H 0.089 0.911 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.177 0.823 31 H 0.159 0.841 32 H 0.193 0.807 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.232 11.416 -0.963 15.361 hybrid contribution 0.202 -0.295 1.396 1.441 sum 10.434 11.121 0.433 15.256 Atomic orbital electron populations 1.22104 0.93474 1.05679 1.00507 1.21368 0.98156 0.95513 0.97428 1.21796 1.00501 0.95651 1.02246 1.21633 0.99350 0.77649 0.99244 1.48753 1.05626 1.05097 1.57695 1.22323 0.96711 0.87909 1.04501 1.21370 0.93225 0.98650 1.16304 1.24316 0.96968 0.92472 0.95244 1.17836 0.83959 0.76086 0.98182 0.90820 1.86579 1.81600 1.29998 1.37501 1.21476 1.02223 1.18318 1.17025 0.92344 1.25034 0.97715 0.94507 0.95550 1.70061 1.25268 1.19600 1.34964 0.86666 0.80927 0.78273 0.82097 1.20152 1.21215 1.20225 1.77260 0.96438 1.11396 1.25317 0.93215 0.93637 0.88315 0.91054 0.92857 0.92217 0.92466 0.90539 0.89712 0.82258 0.84094 0.80668 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 8.92 37.15 0.33 -2.08 16 2 C -0.11 -1.32 3.12 -90.62 -0.28 -1.60 16 3 C -0.14 -1.34 9.19 37.16 0.34 -1.00 16 4 C 0.14 1.85 5.96 -4.04 -0.02 1.83 16 5 N -0.39 -6.81 3.68 -61.36 -0.23 -7.04 16 6 C 0.03 0.50 11.45 -17.23 -0.20 0.31 16 7 C -0.27 -5.18 10.00 -40.02 -0.40 -5.58 16 8 C 0.08 1.79 6.37 -82.40 -0.53 1.27 16 9 C 0.30 7.96 3.38 -29.03 -0.10 7.87 16 10 H 0.07 2.15 8.14 -51.93 -0.42 1.72 16 11 O -0.56 -14.43 12.17 -35.23 -0.43 -14.86 16 12 C -0.55 -15.72 8.72 -34.44 -0.30 -16.02 16 13 H 0.06 1.69 7.74 -52.48 -0.41 1.29 16 14 C 0.08 2.21 5.40 -17.82 -0.10 2.12 16 15 N -0.86 -25.71 12.84 55.43 0.71 -25.00 16 16 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 20 N -0.28 -6.21 9.58 33.67 0.32 -5.89 16 21 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.10 1.87 5.35 -51.93 -0.28 1.60 16 24 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 0.82 8.07 -51.93 -0.42 0.40 16 30 H 0.16 1.88 8.06 -52.48 -0.42 1.46 16 31 H 0.14 2.52 7.92 -52.48 -0.42 2.11 16 32 H 0.35 8.03 8.84 45.56 0.40 8.43 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 281.05 15.07 4.24 4.24 Total: -1.00 -32.20 281.05 -5.71 -37.91 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -4.06 Total: 6.76 kcal Atomic # 6 Polarization: -11.64 SS G_CDS: -1.25 Total: -12.89 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.81 Total: -37.93 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.43 Total: -14.86 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.20 -5.71 -37.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535767972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.791 kcal (2) G-P(sol) polarization free energy of solvation -32.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds