Wall clock time and date at job start Mon Mar 30 2020 02:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47168 * 2 1 4 4 C 1.52996 * 109.47451 * 120.00152 * 2 1 3 5 5 N 1.46505 * 109.47238 * 64.99616 * 4 2 1 6 6 C 1.34946 * 126.03722 * 124.99741 * 5 4 2 7 7 C 1.35312 * 107.74687 * 180.02562 * 6 5 4 8 8 C 1.39865 * 107.91958 * 0.02562 * 7 6 5 9 9 C 1.50707 * 125.89710 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.46649 * 244.99441 * 9 8 7 11 11 O 1.42895 * 109.47045 * 4.99793 * 9 8 7 12 12 C 1.50695 * 109.47014 * 124.99898 * 9 8 7 13 13 H 1.08004 * 120.00546 * 0.27454 * 12 9 8 14 14 C 1.37885 * 119.99721 * 179.97438 * 12 9 8 15 15 N 1.31514 * 120.00035 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99853 * 179.97438 * 14 12 9 17 17 H 1.48500 * 109.47093 * 60.00328 * 16 14 12 18 18 H 1.48495 * 109.47002 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47239 * 300.00048 * 16 14 12 20 20 N 1.30840 * 108.20559 * 0.26034 * 8 7 6 21 21 H 1.08998 * 109.47113 * 300.00076 * 1 2 3 22 22 H 1.09002 * 109.47340 * 59.99811 * 1 2 3 23 23 H 1.08996 * 109.47332 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47572 * 240.00192 * 2 1 3 25 25 H 1.08999 * 109.47361 * 179.97438 * 3 2 1 26 26 H 1.08992 * 109.47068 * 300.00185 * 3 2 1 27 27 H 1.08999 * 109.46897 * 60.00434 * 3 2 1 28 28 H 1.09001 * 109.46942 * 305.00430 * 4 2 1 29 29 H 1.08998 * 109.47785 * 184.99871 * 4 2 1 30 30 H 1.08008 * 126.12545 * 359.97394 * 6 5 4 31 31 H 1.08004 * 126.03816 * 180.02562 * 7 6 5 32 32 H 0.96696 * 114.00520 * 60.00051 * 11 9 8 33 33 H 0.97000 * 119.99706 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 2.4860 -3.1897 1.2868 7 6 1.7400 -4.3140 1.1850 8 6 0.4049 -3.9312 1.0203 9 6 -0.7692 -4.8635 0.8668 10 1 -1.2033 -4.7406 -0.1254 11 8 -0.3301 -6.2134 1.0308 12 6 -1.8060 -4.5420 1.9120 13 1 -1.6342 -3.7396 2.6143 14 6 -2.9768 -5.2681 1.9680 15 7 -3.1884 -6.2417 1.1095 16 14 -4.2617 -4.8700 3.2641 17 1 -4.7176 -3.4670 3.0946 18 1 -5.4186 -5.7886 3.1127 19 1 -3.6701 -5.0385 4.6158 20 7 0.3519 -2.6239 1.0175 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6053 -0.2618 2.1369 29 1 3.1263 -0.6444 1.2951 30 1 3.5569 -3.1459 1.4203 31 1 2.1102 -5.3279 1.2240 32 1 0.0680 -6.3956 1.8930 33 1 -4.0119 -6.7528 1.1491 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001535767972.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:25 Heat of formation + Delta-G solvation = -5.215099 kcal Electronic energy + Delta-G solvation = -15438.824368 eV Core-core repulsion = 12886.226063 eV Total energy + Delta-G solvation = -2552.598304 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.95376 -37.88558 -36.93809 -34.28896 -32.89788 -30.79049 -29.28186 -27.94754 -26.92300 -24.67340 -21.86041 -21.25685 -20.50205 -19.05926 -18.04119 -16.68895 -16.53776 -16.06903 -15.63829 -15.34245 -14.88421 -14.57994 -14.24144 -13.82108 -13.62947 -13.30809 -13.11363 -12.90659 -12.81351 -12.76578 -12.24635 -12.07118 -11.83974 -11.71077 -11.38417 -10.97670 -10.78296 -10.43747 -9.86105 -9.27627 -8.13708 -6.38185 1.16557 1.38875 1.41494 1.49931 1.84297 2.06976 2.42016 3.10786 3.62401 3.82157 4.03188 4.11767 4.20882 4.34501 4.44286 4.51363 4.68539 4.78792 4.87235 5.00742 5.05750 5.07541 5.20564 5.22939 5.39587 5.53754 5.58552 5.66938 5.93650 6.05954 6.42983 6.67637 7.04199 7.31693 7.50542 8.90615 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.030895 B = 0.007611 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.075712 B = 3677.867829 C = 4251.046240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.100 4.100 3 C -0.135 4.135 4 C 0.131 3.869 5 N -0.381 5.381 6 C 0.059 3.941 7 C -0.292 4.292 8 C 0.043 3.957 9 C 0.303 3.697 10 H 0.030 0.970 11 O -0.565 6.565 12 C -0.564 4.564 13 H 0.048 0.952 14 C 0.027 3.973 15 N -0.898 5.898 16 Si 0.962 3.038 17 H -0.274 1.274 18 H -0.277 1.277 19 H -0.267 1.267 20 N -0.314 5.314 21 H 0.049 0.951 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.062 0.938 25 H 0.077 0.923 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.133 0.867 30 H 0.219 0.781 31 H 0.150 0.850 32 H 0.361 0.639 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.413 12.261 0.970 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.120 4.120 3 C -0.193 4.193 4 C 0.012 3.988 5 N -0.164 5.164 6 C -0.087 4.087 7 C -0.321 4.321 8 C -0.123 4.123 9 C 0.244 3.756 10 H 0.048 0.952 11 O -0.368 6.368 12 C -0.602 4.602 13 H 0.066 0.934 14 C -0.175 4.175 15 N -0.536 5.536 16 Si 0.786 3.214 17 H -0.199 1.199 18 H -0.202 1.202 19 H -0.192 1.192 20 N -0.138 5.138 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.096 0.904 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.098 0.902 29 H 0.151 0.849 30 H 0.235 0.765 31 H 0.168 0.832 32 H 0.206 0.794 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.366 13.236 0.207 18.115 hybrid contribution -0.377 -0.759 0.987 1.301 sum 11.989 12.477 1.194 17.345 Atomic orbital electron populations 1.22067 0.96024 1.02927 1.00905 1.21328 0.95902 0.97783 0.96951 1.21731 1.01953 0.92895 1.02740 1.22143 1.02260 0.75004 0.99425 1.49107 1.04280 1.07215 1.55760 1.23067 0.98750 0.86079 1.00813 1.21541 0.91928 1.00497 1.18149 1.23768 0.97420 0.92838 0.98241 1.17349 0.85614 0.77196 0.95487 0.95213 1.86496 1.81836 1.30035 1.38411 1.21668 1.03342 1.18022 1.17210 0.93419 1.25871 0.99742 0.94219 0.97673 1.70185 1.26049 1.20647 1.36670 0.85583 0.78257 0.78074 0.79464 1.19924 1.20209 1.19239 1.77207 0.99646 1.10953 1.25986 0.93212 0.92900 0.92519 0.91992 0.90426 0.91975 0.91817 0.90157 0.84888 0.76455 0.83236 0.79354 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.84 8.92 71.98 0.64 -4.19 16 2 C -0.10 -2.27 3.12 -10.80 -0.03 -2.31 16 3 C -0.14 -2.01 9.19 71.98 0.66 -1.35 16 4 C 0.13 2.93 5.96 86.38 0.52 3.44 16 5 N -0.38 -12.53 3.68 -348.06 -1.28 -13.81 16 6 C 0.06 1.75 11.45 83.54 0.96 2.70 16 7 C -0.29 -11.17 10.00 21.99 0.22 -10.95 16 8 C 0.04 2.06 6.37 43.10 0.27 2.33 16 9 C 0.30 17.05 3.38 29.10 0.10 17.14 16 10 H 0.03 1.90 8.14 -2.39 -0.02 1.88 16 11 O -0.56 -30.62 12.17 -148.98 -1.81 -32.43 16 12 C -0.56 -33.38 8.72 25.60 0.22 -33.16 16 13 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 14 C 0.03 1.60 5.40 84.66 0.46 2.06 16 15 N -0.90 -55.18 12.84 21.45 0.28 -54.90 16 16 Si 0.96 45.49 29.54 68.60 2.03 47.52 16 17 H -0.27 -12.76 7.11 99.48 0.71 -12.06 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 19 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 20 N -0.31 -14.10 9.58 -47.38 -0.45 -14.55 16 21 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.06 2.23 5.35 -2.39 -0.01 2.21 16 24 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.13 1.75 8.07 -2.39 -0.02 1.73 16 30 H 0.22 3.74 8.06 -2.91 -0.02 3.72 16 31 H 0.15 5.26 7.92 -2.91 -0.02 5.23 16 32 H 0.36 17.20 8.84 -74.06 -0.65 16.55 16 33 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -73.78 281.05 3.21 -70.58 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.44 Total: 21.89 kcal Atomic # 6 Polarization: -28.30 SS G_CDS: 4.01 Total: -24.29 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -1.46 Total: -83.27 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.81 Total: -32.43 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -73.78 3.21 -70.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001535767972.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.361 kcal (2) G-P(sol) polarization free energy of solvation -73.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds