Wall clock time and date at job start Mon Mar 30 2020 02:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 N 1.46496 * 109.47484 * 295.00296 * 4 2 1 6 6 N 1.40080 * 126.04330 * 90.02329 * 5 4 2 7 7 C 1.30834 * 108.21039 * 180.02562 * 6 5 4 8 8 C 1.39866 * 108.20306 * 359.97438 * 7 6 5 9 9 C 1.34954 * 126.03546 * 269.72120 * 5 4 2 10 10 C 1.50700 * 126.12661 * 359.97438 * 9 5 4 11 11 H 1.09005 * 109.47270 * 25.00386 * 10 9 5 12 12 O 1.42898 * 109.46927 * 145.00550 * 10 9 5 13 13 C 1.50707 * 109.47348 * 265.00305 * 10 9 5 14 14 H 1.08004 * 119.99813 * 0.02562 * 13 10 9 15 15 C 1.37874 * 120.00087 * 179.97438 * 13 10 9 16 16 N 1.31514 * 119.99909 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 119.99934 * 180.02562 * 15 13 10 18 18 H 1.48502 * 109.47387 * 59.99976 * 17 15 13 19 19 H 1.48497 * 109.47035 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46885 * 299.99793 * 17 15 13 21 21 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 22 22 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 25 25 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 26 26 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 28 28 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 29 29 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 30 30 H 1.08000 * 125.89522 * 179.97438 * 7 6 5 31 31 H 1.07996 * 126.04353 * 180.02562 * 8 7 6 32 32 H 0.96697 * 114.00223 * 60.00063 * 12 10 9 33 33 H 0.97002 * 119.99937 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6523 -2.1327 -1.1907 6 7 0.4666 -2.6834 -1.6939 7 6 0.4791 -3.9695 -1.4540 8 6 1.6717 -4.2789 -0.7919 9 6 2.3771 -3.1332 -0.6476 10 6 3.7284 -2.9981 0.0057 11 1 3.8523 -1.9808 0.3773 12 8 3.8250 -3.9181 1.0948 13 6 4.8066 -3.2991 -1.0032 14 1 4.5400 -3.5615 -2.0164 15 6 6.1334 -3.2384 -0.6332 16 7 6.4580 -2.9183 0.6004 17 14 7.4699 -3.6108 -1.8840 18 1 7.3690 -2.6546 -3.0158 19 1 8.8014 -3.4777 -1.2402 20 1 7.3017 -4.9966 -2.3903 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 1.8934 -0.5139 0.8900 25 1 1.6768 1.9562 0.8901 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6053 -0.2617 -2.1370 29 1 3.1263 -0.6443 -1.2952 30 1 -0.2973 -4.6711 -1.7211 31 1 1.9776 -5.2596 -0.4588 32 1 3.7240 -4.8447 0.8371 33 1 7.3915 -2.8752 0.8606 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536204125.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:28 Heat of formation + Delta-G solvation = 8.951660 kcal Electronic energy + Delta-G solvation = -15821.837016 eV Core-core repulsion = 13269.853028 eV Total energy + Delta-G solvation = -2551.983988 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.50841 -36.09832 -35.64135 -32.28866 -31.39668 -29.60414 -26.97189 -26.62885 -25.72736 -23.00144 -20.55706 -20.16709 -18.75256 -17.13060 -16.39815 -15.00124 -14.69500 -14.67723 -14.23793 -13.47719 -13.40262 -13.11055 -12.85745 -12.46203 -12.16784 -11.93077 -11.66565 -11.27913 -11.08680 -11.00720 -10.97885 -10.73289 -10.51608 -10.30145 -10.08022 -9.41648 -8.81851 -8.57426 -8.31961 -7.66498 -6.14596 -4.34744 2.70109 3.21258 3.24017 3.28374 3.31522 3.62670 4.30972 4.96205 5.02794 5.12664 5.21204 5.42255 5.67858 5.71856 5.79345 5.82769 5.94235 5.98832 6.09061 6.17171 6.23281 6.32883 6.48034 6.50981 6.61605 6.73704 7.40360 7.48519 7.70276 7.79739 7.98087 8.49053 8.68113 9.19110 9.41622 10.88726 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.025646 B = 0.009563 C = 0.008186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.541867 B = 2927.400940 C = 3419.844676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.143 4.143 4 C 0.138 3.862 5 N -0.365 5.365 6 N -0.323 5.323 7 C 0.037 3.963 8 C -0.295 4.295 9 C 0.107 3.893 10 C 0.285 3.715 11 H 0.067 0.933 12 O -0.553 6.553 13 C -0.566 4.566 14 H 0.059 0.941 15 C 0.082 3.918 16 N -0.856 5.856 17 Si 0.895 3.105 18 H -0.275 1.275 19 H -0.285 1.285 20 H -0.274 1.274 21 H 0.049 0.951 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.171 0.829 31 H 0.137 0.863 32 H 0.352 0.648 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.484 3.859 -1.712 8.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.134 4.134 3 C -0.201 4.201 4 C 0.016 3.984 5 N -0.148 5.148 6 N -0.145 5.145 7 C -0.148 4.148 8 C -0.324 4.324 9 C -0.021 4.021 10 C 0.226 3.774 11 H 0.085 0.915 12 O -0.354 6.354 13 C -0.605 4.605 14 H 0.077 0.923 15 C -0.125 4.125 16 N -0.491 5.491 17 Si 0.722 3.278 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.199 1.199 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.096 0.904 25 H 0.077 0.923 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.102 0.898 29 H 0.118 0.882 30 H 0.188 0.812 31 H 0.154 0.846 32 H 0.197 0.803 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.866 5.562 -1.736 9.789 hybrid contribution 1.111 -1.469 -0.734 1.983 sum -6.755 4.093 -2.470 8.275 Atomic orbital electron populations 1.21781 0.94703 1.02462 1.00882 1.21523 0.96730 0.96457 0.98641 1.21756 1.01594 0.94980 1.01749 1.21727 1.01289 0.76719 0.98627 1.48391 1.13955 1.06870 1.45546 1.77118 1.03903 1.10012 1.23417 1.23602 0.98419 0.93323 0.99480 1.21005 0.97706 0.98978 1.14747 1.23012 0.96375 0.87947 0.94773 1.18071 0.82737 0.91553 0.85087 0.91512 1.86596 1.95079 1.18056 1.35713 1.21409 0.90616 1.51501 0.96924 0.92321 1.25020 0.98616 0.93696 0.95152 1.70055 1.18069 1.44436 1.16589 0.86625 0.80622 0.79238 0.81323 1.20071 1.21023 1.19927 0.93224 0.92931 0.92005 0.90373 0.92350 0.91988 0.92651 0.89756 0.88207 0.81238 0.84558 0.80293 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 9.05 37.16 0.34 -1.69 16 2 C -0.11 -1.74 3.13 -90.62 -0.28 -2.02 16 3 C -0.14 -1.77 9.19 37.16 0.34 -1.43 16 4 C 0.14 2.38 5.43 -4.05 -0.02 2.36 16 5 N -0.36 -7.40 3.21 -57.14 -0.18 -7.58 16 6 N -0.32 -6.39 11.64 30.62 0.36 -6.04 16 7 C 0.04 0.69 12.03 -17.37 -0.21 0.48 16 8 C -0.30 -6.00 10.17 -40.01 -0.41 -6.41 16 9 C 0.11 2.38 5.93 -82.26 -0.49 1.89 16 10 C 0.29 7.08 2.91 -29.03 -0.08 7.00 16 11 H 0.07 1.76 7.49 -51.93 -0.39 1.37 16 12 O -0.55 -13.96 12.61 -35.23 -0.44 -14.40 16 13 C -0.57 -15.08 8.75 -34.44 -0.30 -15.38 16 14 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 15 C 0.08 2.21 5.40 -17.82 -0.10 2.11 16 16 N -0.86 -24.11 12.84 55.43 0.71 -23.40 16 17 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 1.03 6.95 -51.93 -0.36 0.67 16 24 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.10 1.81 7.53 -51.92 -0.39 1.42 16 30 H 0.17 2.44 8.06 -52.49 -0.42 2.02 16 31 H 0.14 2.54 7.57 -52.49 -0.40 2.14 16 32 H 0.35 7.88 8.19 45.56 0.37 8.25 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 281.97 15.07 4.25 4.25 Total: -1.00 -29.99 281.97 -5.63 -35.62 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -4.09 Total: 9.06 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: -1.21 Total: -13.09 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.88 Total: -37.02 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.44 Total: -14.40 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.99 -5.63 -35.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536204125.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.575 kcal (2) G-P(sol) polarization free energy of solvation -29.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds