Wall clock time and date at job start Mon Mar 30 2020 02:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.46984 * 2 1 4 4 C 1.53001 * 109.47388 * 119.99997 * 2 1 3 5 5 N 1.46501 * 109.47191 * 65.43349 * 4 2 1 6 6 N 1.40086 * 126.03571 * 1.82783 * 5 4 2 7 7 C 1.30832 * 108.20603 * 179.73131 * 6 5 4 8 8 C 1.39877 * 108.20049 * 359.97438 * 7 6 5 9 9 C 1.34946 * 126.03928 * 181.50686 * 5 4 2 10 10 C 1.50705 * 126.12250 * 0.27512 * 9 5 4 11 11 H 1.09003 * 109.47028 * 144.26767 * 10 9 5 12 12 O 1.42898 * 109.47558 * 24.26555 * 10 9 5 13 13 C 1.50705 * 109.46890 * 264.26386 * 10 9 5 14 14 H 1.08007 * 119.99752 * 359.97438 * 13 10 9 15 15 C 1.37873 * 120.00196 * 180.02562 * 13 10 9 16 16 N 1.31522 * 119.99770 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 120.00243 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47012 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.46958 * 209.99956 * 17 15 13 20 20 H 1.48503 * 109.46757 * 329.99815 * 17 15 13 21 21 H 1.09006 * 109.47309 * 304.45482 * 1 2 3 22 22 H 1.08998 * 109.47447 * 64.46067 * 1 2 3 23 23 H 1.09007 * 109.47061 * 184.46098 * 1 2 3 24 24 H 1.08997 * 109.47576 * 239.99908 * 2 1 3 25 25 H 1.09000 * 109.47103 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.46913 * 300.00001 * 3 2 1 27 27 H 1.09004 * 109.47191 * 59.99978 * 3 2 1 28 28 H 1.09009 * 109.47003 * 305.43533 * 4 2 1 29 29 H 1.09002 * 109.47364 * 185.43754 * 4 2 1 30 30 H 1.08001 * 125.89934 * 180.02562 * 7 6 5 31 31 H 1.08001 * 126.03851 * 179.97438 * 8 7 6 32 32 H 0.96698 * 113.99633 * 291.10282 * 12 10 9 33 33 H 0.96994 * 119.99940 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6614 -2.1351 1.1857 6 7 0.9756 -2.7581 0.1350 7 6 0.8260 -4.0222 0.4373 8 6 1.4114 -4.2446 1.6880 9 6 1.9170 -3.0685 2.1261 10 6 2.6370 -2.8416 3.4304 11 1 2.1926 -3.4673 4.2044 12 8 2.5226 -1.4673 3.8050 13 6 4.0922 -3.1990 3.2697 14 1 4.4589 -3.5552 2.3183 15 6 4.9553 -3.0722 4.3374 16 7 4.5086 -2.6388 5.4961 17 14 6.7592 -3.5145 4.1380 18 1 7.5177 -2.3146 3.7019 19 1 7.2972 -3.9957 5.4357 20 1 6.8964 -4.5848 3.1177 21 1 -0.3634 0.5814 0.8474 22 1 -0.3634 0.4430 -0.9272 23 1 -0.3633 -1.0246 0.0799 24 1 1.8933 -0.5138 -0.8899 25 1 3.1299 1.4426 -0.0005 26 1 1.6765 1.9563 -0.8900 27 1 1.6765 1.9564 0.8900 28 1 1.5993 -0.2666 2.1366 29 1 3.1256 -0.6377 1.2992 30 1 0.3360 -4.7658 -0.1738 31 1 1.4517 -5.1881 2.2120 32 1 3.0141 -0.8617 3.2334 33 1 5.1158 -2.5493 6.2471 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536204126.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:30 Heat of formation + Delta-G solvation = 14.461550 kcal Electronic energy + Delta-G solvation = -15863.808152 eV Core-core repulsion = 13312.063092 eV Total energy + Delta-G solvation = -2551.745061 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.52493 -36.18235 -35.68954 -32.34767 -31.16012 -29.95992 -27.03495 -26.51564 -25.74080 -22.90207 -21.01792 -19.39179 -19.24028 -17.16806 -16.24056 -15.25178 -14.76641 -14.30233 -13.99411 -13.89433 -13.40062 -13.17632 -12.85034 -12.46383 -12.12045 -12.07076 -11.79297 -11.48593 -11.07959 -11.00552 -10.84419 -10.70887 -10.58636 -10.26878 -9.93410 -9.34494 -8.91410 -8.59384 -8.28022 -7.62752 -6.17147 -4.37399 2.73276 3.19804 3.24072 3.27776 3.32382 3.63996 4.29297 4.76343 5.07061 5.08064 5.21406 5.54944 5.67167 5.71261 5.75499 5.77340 5.91587 6.01057 6.07502 6.14017 6.19321 6.35086 6.51104 6.59810 6.62593 6.84360 7.44370 7.45643 7.67969 7.82703 7.94324 8.49254 8.66642 9.07207 9.37970 10.85879 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.028590 B = 0.009012 C = 0.007866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.121792 B = 3106.182139 C = 3558.909089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.147 4.147 4 C 0.134 3.866 5 N -0.365 5.365 6 N -0.321 5.321 7 C 0.035 3.965 8 C -0.296 4.296 9 C 0.108 3.892 10 C 0.281 3.719 11 H 0.084 0.916 12 O -0.565 6.565 13 C -0.566 4.566 14 H 0.060 0.940 15 C 0.080 3.920 16 N -0.857 5.857 17 Si 0.896 3.104 18 H -0.278 1.278 19 H -0.283 1.283 20 H -0.271 1.271 21 H 0.046 0.954 22 H 0.048 0.952 23 H 0.074 0.926 24 H 0.079 0.921 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.171 0.829 31 H 0.138 0.862 32 H 0.348 0.652 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.315 3.993 -7.899 9.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.114 4.114 3 C -0.205 4.205 4 C 0.013 3.987 5 N -0.147 5.147 6 N -0.143 5.143 7 C -0.150 4.150 8 C -0.326 4.326 9 C -0.020 4.020 10 C 0.222 3.778 11 H 0.101 0.899 12 O -0.369 6.369 13 C -0.605 4.605 14 H 0.079 0.921 15 C -0.127 4.127 16 N -0.492 5.492 17 Si 0.723 3.277 18 H -0.204 1.204 19 H -0.209 1.209 20 H -0.196 1.196 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.076 0.924 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.099 0.901 30 H 0.188 0.812 31 H 0.155 0.845 32 H 0.194 0.806 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.853 4.839 -8.090 10.602 hybrid contribution 1.575 -0.861 0.104 1.798 sum -3.278 3.978 -7.986 9.505 Atomic orbital electron populations 1.21878 0.94595 1.03332 1.00550 1.21129 0.96953 0.95494 0.97821 1.21821 1.01160 0.95467 1.02014 1.21944 1.00306 0.76796 0.99687 1.48362 1.44483 1.07969 1.13910 1.77040 1.18273 1.07935 1.11004 1.23625 1.00710 0.93998 0.96706 1.21058 1.13232 0.98892 0.99376 1.22951 0.95598 0.88986 0.94495 1.18306 0.93213 0.81530 0.84759 0.89876 1.86603 1.73403 1.18079 1.58830 1.21458 0.92671 1.48329 0.98005 0.92147 1.25047 0.99105 0.93711 0.94823 1.70066 1.35370 1.42544 1.01237 0.86539 0.84413 0.78969 0.77782 1.20423 1.20867 1.19617 0.93472 0.93298 0.90685 0.90284 0.92421 0.92387 0.92340 0.88958 0.90051 0.81234 0.84452 0.80572 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.04 37.15 0.34 -1.73 16 2 C -0.10 -1.36 2.63 -90.62 -0.24 -1.60 16 3 C -0.15 -1.68 9.19 37.16 0.34 -1.34 16 4 C 0.13 2.28 4.06 -4.04 -0.02 2.27 16 5 N -0.36 -7.39 3.82 -57.14 -0.22 -7.61 16 6 N -0.32 -6.26 9.64 30.63 0.30 -5.97 16 7 C 0.03 0.64 12.03 -17.36 -0.21 0.43 16 8 C -0.30 -6.13 10.72 -40.01 -0.43 -6.56 16 9 C 0.11 2.43 5.98 -82.27 -0.49 1.94 16 10 C 0.28 7.05 3.28 -29.03 -0.10 6.95 16 11 H 0.08 2.25 8.14 -51.93 -0.42 1.83 16 12 O -0.56 -13.89 11.47 -35.23 -0.40 -14.30 16 13 C -0.57 -15.11 8.67 -34.44 -0.30 -15.41 16 14 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 15 C 0.08 2.15 5.40 -17.82 -0.10 2.05 16 16 N -0.86 -24.08 12.84 55.43 0.71 -23.36 16 17 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.07 1.24 5.99 -51.92 -0.31 0.93 16 24 H 0.08 1.22 8.01 -51.93 -0.42 0.81 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.57 6.73 -51.92 -0.35 1.22 16 29 H 0.08 1.38 7.51 -51.93 -0.39 0.99 16 30 H 0.17 2.44 8.06 -52.49 -0.42 2.02 16 31 H 0.14 2.66 8.06 -52.49 -0.42 2.23 16 32 H 0.35 7.68 5.99 45.56 0.27 7.95 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 274.86 15.07 4.14 4.14 Total: -1.00 -29.61 274.86 -5.81 -35.42 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -4.12 Total: 9.13 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -1.20 Total: -12.99 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.79 Total: -36.94 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -0.40 Total: -14.30 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.61 -5.81 -35.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536204126.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.880 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds