Wall clock time and date at job start Mon Mar 30 2020 02:52:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.53005 * 109.46984 * 2 1
4 4 C 1.53001 * 109.47388 * 119.99997 * 2 1 3
5 5 N 1.46501 * 109.47191 * 65.43349 * 4 2 1
6 6 N 1.40086 * 126.03571 * 1.82783 * 5 4 2
7 7 C 1.30832 * 108.20603 * 179.73131 * 6 5 4
8 8 C 1.39877 * 108.20049 * 359.97438 * 7 6 5
9 9 C 1.34946 * 126.03928 * 181.50686 * 5 4 2
10 10 C 1.50705 * 126.12250 * 0.27512 * 9 5 4
11 11 H 1.09003 * 109.47028 * 144.26767 * 10 9 5
12 12 O 1.42898 * 109.47558 * 24.26555 * 10 9 5
13 13 C 1.50705 * 109.46890 * 264.26386 * 10 9 5
14 14 H 1.08007 * 119.99752 * 359.97438 * 13 10 9
15 15 C 1.37873 * 120.00196 * 180.02562 * 13 10 9
16 16 N 1.31522 * 119.99770 * 359.97438 * 15 13 10
17 17 Si 1.86801 * 120.00243 * 180.02562 * 15 13 10
18 18 H 1.48503 * 109.47012 * 89.99863 * 17 15 13
19 19 H 1.48503 * 109.46958 * 209.99956 * 17 15 13
20 20 H 1.48503 * 109.46757 * 329.99815 * 17 15 13
21 21 H 1.09006 * 109.47309 * 304.45482 * 1 2 3
22 22 H 1.08998 * 109.47447 * 64.46067 * 1 2 3
23 23 H 1.09007 * 109.47061 * 184.46098 * 1 2 3
24 24 H 1.08997 * 109.47576 * 239.99908 * 2 1 3
25 25 H 1.09000 * 109.47103 * 180.02562 * 3 2 1
26 26 H 1.09000 * 109.46913 * 300.00001 * 3 2 1
27 27 H 1.09004 * 109.47191 * 59.99978 * 3 2 1
28 28 H 1.09009 * 109.47003 * 305.43533 * 4 2 1
29 29 H 1.09002 * 109.47364 * 185.43754 * 4 2 1
30 30 H 1.08001 * 125.89934 * 180.02562 * 7 6 5
31 31 H 1.08001 * 126.03851 * 179.97438 * 8 7 6
32 32 H 0.96698 * 113.99633 * 291.10282 * 12 10 9
33 33 H 0.96994 * 119.99940 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0400 -0.7212 1.2492
5 7 1.6614 -2.1351 1.1857
6 7 0.9756 -2.7581 0.1350
7 6 0.8260 -4.0222 0.4373
8 6 1.4114 -4.2446 1.6880
9 6 1.9170 -3.0685 2.1261
10 6 2.6370 -2.8416 3.4304
11 1 2.1926 -3.4673 4.2044
12 8 2.5226 -1.4673 3.8050
13 6 4.0922 -3.1990 3.2697
14 1 4.4589 -3.5552 2.3183
15 6 4.9553 -3.0722 4.3374
16 7 4.5086 -2.6388 5.4961
17 14 6.7592 -3.5145 4.1380
18 1 7.5177 -2.3146 3.7019
19 1 7.2972 -3.9957 5.4357
20 1 6.8964 -4.5848 3.1177
21 1 -0.3634 0.5814 0.8474
22 1 -0.3634 0.4430 -0.9272
23 1 -0.3633 -1.0246 0.0799
24 1 1.8933 -0.5138 -0.8899
25 1 3.1299 1.4426 -0.0005
26 1 1.6765 1.9563 -0.8900
27 1 1.6765 1.9564 0.8900
28 1 1.5993 -0.2666 2.1366
29 1 3.1256 -0.6377 1.2992
30 1 0.3360 -4.7658 -0.1738
31 1 1.4517 -5.1881 2.2120
32 1 3.0141 -0.8617 3.2334
33 1 5.1158 -2.5493 6.2471
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001536204126.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:52:29
Heat of formation + Delta-G solvation = -4.874410 kcal
Electronic energy + Delta-G solvation = -15864.646622 eV
Core-core repulsion = 13312.063092 eV
Total energy + Delta-G solvation = -2552.583531 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 224.127 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-42.09951 -37.77931 -37.23801 -34.39361 -32.62773 -31.66578 -28.54812 -27.97524
-27.12372 -24.83464 -22.38085 -21.01319 -20.60658 -19.18081 -17.83472 -16.82898
-16.59513 -16.05668 -15.32426 -15.30735 -15.16703 -14.72700 -14.42416 -13.81002
-13.59128 -13.50730 -13.16497 -12.98188 -12.89802 -12.82446 -12.16808 -12.05543
-11.86490 -11.73624 -11.58569 -11.19147 -10.88220 -10.52510 -9.92006 -9.27021
-8.21956 -6.50268 1.10764 1.39158 1.41396 1.52117 1.75665 2.05524
2.37118 3.02270 3.51776 3.89594 3.93653 4.09132 4.17485 4.29246
4.49954 4.55707 4.61855 4.78215 4.84123 4.95723 5.00243 5.04816
5.13664 5.20437 5.41592 5.44275 5.54649 5.62007 5.85628 5.97302
6.26044 6.58355 6.92806 7.14823 7.31818 8.80999
Molecular weight = 224.13amu
Principal moments of inertia in cm(-1)
A = 0.028590 B = 0.009012 C = 0.007866
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 979.121792 B = 3106.182139 C = 3558.909089
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.087 4.087
3 C -0.141 4.141
4 C 0.127 3.873
5 N -0.367 5.367
6 N -0.319 5.319
7 C 0.040 3.960
8 C -0.304 4.304
9 C 0.078 3.922
10 C 0.287 3.713
11 H 0.052 0.948
12 O -0.574 6.574
13 C -0.577 4.577
14 H 0.052 0.948
15 C 0.035 3.965
16 N -0.891 5.891
17 Si 0.963 3.037
18 H -0.270 1.270
19 H -0.278 1.278
20 H -0.270 1.270
21 H 0.051 0.949
22 H 0.068 0.932
23 H 0.049 0.951
24 H 0.068 0.932
25 H 0.060 0.940
26 H 0.076 0.924
27 H 0.064 0.936
28 H 0.089 0.911
29 H 0.078 0.922
30 H 0.213 0.787
31 H 0.144 0.856
32 H 0.358 0.642
33 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.033 4.374 -9.336 11.070
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.106 4.106
3 C -0.199 4.199
4 C 0.006 3.994
5 N -0.149 5.149
6 N -0.141 5.141
7 C -0.145 4.145
8 C -0.334 4.334
9 C -0.051 4.051
10 C 0.228 3.772
11 H 0.070 0.930
12 O -0.379 6.379
13 C -0.615 4.615
14 H 0.070 0.930
15 C -0.169 4.169
16 N -0.527 5.527
17 Si 0.787 3.213
18 H -0.195 1.195
19 H -0.203 1.203
20 H -0.195 1.195
21 H 0.070 0.930
22 H 0.087 0.913
23 H 0.068 0.932
24 H 0.086 0.914
25 H 0.079 0.921
26 H 0.095 0.905
27 H 0.083 0.917
28 H 0.107 0.893
29 H 0.096 0.904
30 H 0.230 0.770
31 H 0.162 0.838
32 H 0.205 0.795
33 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -4.572 5.238 -9.537 11.802
hybrid contribution 1.416 -0.985 0.531 1.805
sum -3.156 4.252 -9.006 10.448
Atomic orbital electron populations
1.21827 0.94325 1.01969 1.01823 1.21097 0.97068 0.96775 0.95618
1.21792 1.01411 0.93440 1.03243 1.22149 1.00206 0.75802 1.01206
1.48602 1.44231 1.08666 1.13441 1.77045 1.17837 1.08481 1.10707
1.24249 0.99841 0.94301 0.96077 1.21339 1.12947 0.98683 1.00387
1.22613 0.97401 0.90611 0.94497 1.17923 0.92746 0.81141 0.85389
0.93019 1.86538 1.73666 1.18181 1.59556 1.21619 0.93750 1.48376
0.97712 0.93009 1.25821 1.03319 0.93391 0.94351 1.70171 1.36963
1.43562 1.01994 0.85503 0.79186 0.78832 0.77785 1.19498 1.20297
1.19500 0.93027 0.91302 0.93172 0.91356 0.92059 0.90519 0.91736
0.89281 0.90414 0.77022 0.83808 0.79459 0.92337
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.77 9.04 71.98 0.65 -3.12 16
2 C -0.09 -2.35 2.63 -10.79 -0.03 -2.38 16
3 C -0.14 -2.90 9.19 71.98 0.66 -2.24 16
4 C 0.13 4.28 4.06 86.38 0.35 4.63 16
5 N -0.37 -14.76 3.82 -334.68 -1.28 -16.04 16
6 N -0.32 -12.04 9.64 -57.02 -0.55 -12.59 16
7 C 0.04 1.42 12.03 85.24 1.03 2.44 16
8 C -0.30 -12.46 10.72 21.99 0.24 -12.23 16
9 C 0.08 3.53 5.98 41.40 0.25 3.77 16
10 C 0.29 14.81 3.28 29.10 0.10 14.90 16
11 H 0.05 2.94 8.14 -2.39 -0.02 2.92 16
12 O -0.57 -28.89 11.47 -148.98 -1.71 -30.59 16
13 C -0.58 -31.20 8.67 25.60 0.22 -30.98 16
14 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16
15 C 0.04 1.89 5.40 84.65 0.46 2.35 16
16 N -0.89 -50.61 12.84 21.45 0.28 -50.34 16
17 Si 0.96 42.06 29.54 68.60 2.03 44.09 16
18 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16
19 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16
20 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16
21 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16
22 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16
23 H 0.05 1.59 5.99 -2.38 -0.01 1.57 16
24 H 0.07 2.01 8.01 -2.39 -0.02 1.99 16
25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16
26 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16
27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16
28 H 0.09 3.04 6.73 -2.38 -0.02 3.02 16
29 H 0.08 2.64 7.51 -2.39 -0.02 2.63 16
30 H 0.21 5.37 8.06 -2.91 -0.02 5.35 16
31 H 0.14 5.54 8.06 -2.91 -0.02 5.52 16
32 H 0.36 16.10 5.99 -74.06 -0.44 15.66 16
33 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16
Total: -1.00 -62.86 274.86 3.33 -59.53
By element:
Atomic # 1 Polarization: 28.14 SS G_CDS: 0.65 Total: 28.79 kcal
Atomic # 6 Polarization: -26.76 SS G_CDS: 3.92 Total: -22.84 kcal
Atomic # 7 Polarization: -77.42 SS G_CDS: -1.55 Total: -78.97 kcal
Atomic # 8 Polarization: -28.89 SS G_CDS: -1.71 Total: -30.59 kcal
Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal
Total: -62.86 3.33 -59.53 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001536204126.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.654 kcal
(2) G-P(sol) polarization free energy of solvation -62.863 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.209 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.529 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.874 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds