Wall clock time and date at job start Mon Mar 30 2020 02:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.46984 * 2 1 4 4 C 1.53001 * 109.47388 * 119.99997 * 2 1 3 5 5 N 1.46501 * 109.47191 * 65.43349 * 4 2 1 6 6 N 1.40086 * 126.03571 * 1.82783 * 5 4 2 7 7 C 1.30832 * 108.20603 * 179.73131 * 6 5 4 8 8 C 1.39877 * 108.20049 * 359.97438 * 7 6 5 9 9 C 1.34946 * 126.03928 * 181.50686 * 5 4 2 10 10 C 1.50705 * 126.12250 * 0.27512 * 9 5 4 11 11 H 1.09003 * 109.47028 * 144.26767 * 10 9 5 12 12 O 1.42898 * 109.47558 * 24.26555 * 10 9 5 13 13 C 1.50705 * 109.46890 * 264.26386 * 10 9 5 14 14 H 1.08007 * 119.99752 * 359.97438 * 13 10 9 15 15 C 1.37873 * 120.00196 * 180.02562 * 13 10 9 16 16 N 1.31522 * 119.99770 * 359.97438 * 15 13 10 17 17 Si 1.86801 * 120.00243 * 180.02562 * 15 13 10 18 18 H 1.48503 * 109.47012 * 89.99863 * 17 15 13 19 19 H 1.48503 * 109.46958 * 209.99956 * 17 15 13 20 20 H 1.48503 * 109.46757 * 329.99815 * 17 15 13 21 21 H 1.09006 * 109.47309 * 304.45482 * 1 2 3 22 22 H 1.08998 * 109.47447 * 64.46067 * 1 2 3 23 23 H 1.09007 * 109.47061 * 184.46098 * 1 2 3 24 24 H 1.08997 * 109.47576 * 239.99908 * 2 1 3 25 25 H 1.09000 * 109.47103 * 180.02562 * 3 2 1 26 26 H 1.09000 * 109.46913 * 300.00001 * 3 2 1 27 27 H 1.09004 * 109.47191 * 59.99978 * 3 2 1 28 28 H 1.09009 * 109.47003 * 305.43533 * 4 2 1 29 29 H 1.09002 * 109.47364 * 185.43754 * 4 2 1 30 30 H 1.08001 * 125.89934 * 180.02562 * 7 6 5 31 31 H 1.08001 * 126.03851 * 179.97438 * 8 7 6 32 32 H 0.96698 * 113.99633 * 291.10282 * 12 10 9 33 33 H 0.96994 * 119.99940 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6614 -2.1351 1.1857 6 7 0.9756 -2.7581 0.1350 7 6 0.8260 -4.0222 0.4373 8 6 1.4114 -4.2446 1.6880 9 6 1.9170 -3.0685 2.1261 10 6 2.6370 -2.8416 3.4304 11 1 2.1926 -3.4673 4.2044 12 8 2.5226 -1.4673 3.8050 13 6 4.0922 -3.1990 3.2697 14 1 4.4589 -3.5552 2.3183 15 6 4.9553 -3.0722 4.3374 16 7 4.5086 -2.6388 5.4961 17 14 6.7592 -3.5145 4.1380 18 1 7.5177 -2.3146 3.7019 19 1 7.2972 -3.9957 5.4357 20 1 6.8964 -4.5848 3.1177 21 1 -0.3634 0.5814 0.8474 22 1 -0.3634 0.4430 -0.9272 23 1 -0.3633 -1.0246 0.0799 24 1 1.8933 -0.5138 -0.8899 25 1 3.1299 1.4426 -0.0005 26 1 1.6765 1.9563 -0.8900 27 1 1.6765 1.9564 0.8900 28 1 1.5993 -0.2666 2.1366 29 1 3.1256 -0.6377 1.2992 30 1 0.3360 -4.7658 -0.1738 31 1 1.4517 -5.1881 2.2120 32 1 3.0141 -0.8617 3.2334 33 1 5.1158 -2.5493 6.2471 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001536204126.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:29 Heat of formation + Delta-G solvation = -4.874410 kcal Electronic energy + Delta-G solvation = -15864.646622 eV Core-core repulsion = 13312.063092 eV Total energy + Delta-G solvation = -2552.583531 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.09951 -37.77931 -37.23801 -34.39361 -32.62773 -31.66578 -28.54812 -27.97524 -27.12372 -24.83464 -22.38085 -21.01319 -20.60658 -19.18081 -17.83472 -16.82898 -16.59513 -16.05668 -15.32426 -15.30735 -15.16703 -14.72700 -14.42416 -13.81002 -13.59128 -13.50730 -13.16497 -12.98188 -12.89802 -12.82446 -12.16808 -12.05543 -11.86490 -11.73624 -11.58569 -11.19147 -10.88220 -10.52510 -9.92006 -9.27021 -8.21956 -6.50268 1.10764 1.39158 1.41396 1.52117 1.75665 2.05524 2.37118 3.02270 3.51776 3.89594 3.93653 4.09132 4.17485 4.29246 4.49954 4.55707 4.61855 4.78215 4.84123 4.95723 5.00243 5.04816 5.13664 5.20437 5.41592 5.44275 5.54649 5.62007 5.85628 5.97302 6.26044 6.58355 6.92806 7.14823 7.31818 8.80999 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.028590 B = 0.009012 C = 0.007866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.121792 B = 3106.182139 C = 3558.909089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C -0.141 4.141 4 C 0.127 3.873 5 N -0.367 5.367 6 N -0.319 5.319 7 C 0.040 3.960 8 C -0.304 4.304 9 C 0.078 3.922 10 C 0.287 3.713 11 H 0.052 0.948 12 O -0.574 6.574 13 C -0.577 4.577 14 H 0.052 0.948 15 C 0.035 3.965 16 N -0.891 5.891 17 Si 0.963 3.037 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 H 0.051 0.949 22 H 0.068 0.932 23 H 0.049 0.951 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.213 0.787 31 H 0.144 0.856 32 H 0.358 0.642 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.033 4.374 -9.336 11.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 C -0.199 4.199 4 C 0.006 3.994 5 N -0.149 5.149 6 N -0.141 5.141 7 C -0.145 4.145 8 C -0.334 4.334 9 C -0.051 4.051 10 C 0.228 3.772 11 H 0.070 0.930 12 O -0.379 6.379 13 C -0.615 4.615 14 H 0.070 0.930 15 C -0.169 4.169 16 N -0.527 5.527 17 Si 0.787 3.213 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 H 0.070 0.930 22 H 0.087 0.913 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.230 0.770 31 H 0.162 0.838 32 H 0.205 0.795 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.572 5.238 -9.537 11.802 hybrid contribution 1.416 -0.985 0.531 1.805 sum -3.156 4.252 -9.006 10.448 Atomic orbital electron populations 1.21827 0.94325 1.01969 1.01823 1.21097 0.97068 0.96775 0.95618 1.21792 1.01411 0.93440 1.03243 1.22149 1.00206 0.75802 1.01206 1.48602 1.44231 1.08666 1.13441 1.77045 1.17837 1.08481 1.10707 1.24249 0.99841 0.94301 0.96077 1.21339 1.12947 0.98683 1.00387 1.22613 0.97401 0.90611 0.94497 1.17923 0.92746 0.81141 0.85389 0.93019 1.86538 1.73666 1.18181 1.59556 1.21619 0.93750 1.48376 0.97712 0.93009 1.25821 1.03319 0.93391 0.94351 1.70171 1.36963 1.43562 1.01994 0.85503 0.79186 0.78832 0.77785 1.19498 1.20297 1.19500 0.93027 0.91302 0.93172 0.91356 0.92059 0.90519 0.91736 0.89281 0.90414 0.77022 0.83808 0.79459 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.04 71.98 0.65 -3.12 16 2 C -0.09 -2.35 2.63 -10.79 -0.03 -2.38 16 3 C -0.14 -2.90 9.19 71.98 0.66 -2.24 16 4 C 0.13 4.28 4.06 86.38 0.35 4.63 16 5 N -0.37 -14.76 3.82 -334.68 -1.28 -16.04 16 6 N -0.32 -12.04 9.64 -57.02 -0.55 -12.59 16 7 C 0.04 1.42 12.03 85.24 1.03 2.44 16 8 C -0.30 -12.46 10.72 21.99 0.24 -12.23 16 9 C 0.08 3.53 5.98 41.40 0.25 3.77 16 10 C 0.29 14.81 3.28 29.10 0.10 14.90 16 11 H 0.05 2.94 8.14 -2.39 -0.02 2.92 16 12 O -0.57 -28.89 11.47 -148.98 -1.71 -30.59 16 13 C -0.58 -31.20 8.67 25.60 0.22 -30.98 16 14 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 15 C 0.04 1.89 5.40 84.65 0.46 2.35 16 16 N -0.89 -50.61 12.84 21.45 0.28 -50.34 16 17 Si 0.96 42.06 29.54 68.60 2.03 44.09 16 18 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 19 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 21 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 22 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 23 H 0.05 1.59 5.99 -2.38 -0.01 1.57 16 24 H 0.07 2.01 8.01 -2.39 -0.02 1.99 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.09 3.04 6.73 -2.38 -0.02 3.02 16 29 H 0.08 2.64 7.51 -2.39 -0.02 2.63 16 30 H 0.21 5.37 8.06 -2.91 -0.02 5.35 16 31 H 0.14 5.54 8.06 -2.91 -0.02 5.52 16 32 H 0.36 16.10 5.99 -74.06 -0.44 15.66 16 33 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -62.86 274.86 3.33 -59.53 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.65 Total: 28.79 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: 3.92 Total: -22.84 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -1.55 Total: -78.97 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -1.71 Total: -30.59 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -62.86 3.33 -59.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536204126.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.654 kcal (2) G-P(sol) polarization free energy of solvation -62.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds