Wall clock time and date at job start Mon Mar 30 2020 03:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21281 * 119.99974 * 2 1 4 4 N 1.34778 * 119.99973 * 179.97438 * 2 1 3 5 5 C 1.47892 * 134.34311 * 180.02562 * 4 2 1 6 6 C 1.52375 * 85.73257 * 156.54358 * 5 4 2 7 7 C 1.48161 * 134.44944 * 359.88843 * 4 2 1 8 8 C 1.53654 * 116.39618 * 141.28147 * 6 5 4 9 9 C 1.54605 * 102.73195 * 162.91767 * 8 6 5 10 10 N 1.47144 * 107.36262 * 339.24918 * 9 8 6 11 11 C 1.36937 * 125.58305 * 179.09493 * 10 9 8 12 12 H 1.08002 * 119.99549 * 179.97438 * 11 10 9 13 13 C 1.38811 * 120.00398 * 359.97438 * 11 10 9 14 14 N 1.31627 * 119.99797 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00157 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47012 * 89.99953 * 15 13 11 17 17 H 1.48494 * 109.47210 * 209.99595 * 15 13 11 18 18 H 1.48500 * 109.47093 * 330.00043 * 15 13 11 19 19 C 1.47719 * 108.82637 * 359.07314 * 10 9 8 20 20 H 1.09004 * 109.47405 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47245 * 300.00130 * 1 2 3 22 22 H 1.09005 * 109.47124 * 60.00419 * 1 2 3 23 23 H 1.09002 * 113.85436 * 42.31390 * 5 4 2 24 24 H 1.08998 * 113.84884 * 270.77567 * 5 4 2 25 25 H 1.08997 * 113.74300 * 89.28005 * 7 4 2 26 26 H 1.09006 * 114.04347 * 317.66282 * 7 4 2 27 27 H 1.08994 * 110.76150 * 281.23220 * 8 6 5 28 28 H 1.09004 * 110.75900 * 44.61270 * 8 6 5 29 29 H 1.08996 * 109.86482 * 98.69071 * 9 8 6 30 30 H 1.08997 * 109.86858 * 219.66814 * 9 8 6 31 31 H 0.96999 * 119.99806 * 180.02562 * 14 13 11 32 32 H 1.09004 * 110.40181 * 263.66202 * 19 10 9 33 33 H 1.09001 * 110.40025 * 141.25086 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6136 -1.5336 0.0012 6 6 3.1582 -2.8559 0.6061 7 6 1.7836 -2.5946 0.0032 8 6 3.8888 -4.1171 0.1199 9 6 3.5266 -5.1595 1.2028 10 7 3.1162 -4.4183 2.4058 11 6 2.7011 -4.9790 3.5842 12 1 2.4199 -4.3467 4.4134 13 6 2.6417 -6.3598 3.7129 14 7 2.9840 -7.1303 2.7021 15 14 2.0761 -7.1246 5.3206 16 1 0.6035 -7.3131 5.2880 17 1 2.7396 -8.4405 5.5032 18 1 2.4355 -6.2281 6.4486 19 6 3.2259 -2.9704 2.1343 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8901 23 1 4.2231 -0.9284 0.6724 24 1 4.0443 -1.6299 -0.9955 25 1 1.6522 -3.0154 -0.9936 26 1 0.9568 -2.8242 0.6754 27 1 3.5154 -4.4280 -0.8558 28 1 4.9657 -3.9517 0.0879 29 1 2.7046 -5.7849 0.8546 30 1 4.3951 -5.7794 1.4254 31 1 2.9421 -8.0952 2.7919 32 1 4.1771 -2.5858 2.5024 33 1 2.3951 -2.4339 2.5927 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001640213911.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:42 Heat of formation + Delta-G solvation = 4.565570 kcal Electronic energy + Delta-G solvation = -15723.465054 eV Core-core repulsion = 13171.290871 eV Total energy + Delta-G solvation = -2552.174183 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.72775 -39.49328 -37.19425 -34.11618 -31.92982 -30.81604 -29.17251 -27.40967 -27.14232 -25.15019 -22.11311 -20.50610 -19.53115 -18.79908 -17.78377 -17.06679 -16.71943 -16.60090 -15.82244 -15.55176 -15.17794 -14.24883 -14.02710 -13.80894 -13.66999 -13.30124 -13.21341 -13.02148 -12.83408 -12.76380 -12.41800 -12.02402 -11.93547 -11.75079 -11.65499 -11.27175 -10.77497 -10.65406 -9.72117 -8.87292 -7.83413 -5.18285 1.47643 1.48568 1.57268 1.61150 1.86694 2.50274 3.29283 3.40052 3.56519 3.68294 3.78534 4.13062 4.20807 4.36610 4.52067 4.58731 4.61800 4.65571 4.73596 4.78170 4.85336 4.98704 5.02945 5.12607 5.14087 5.24168 5.47471 5.73681 5.83530 6.22695 6.72225 7.11859 7.13560 7.79419 8.43289 9.26453 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.041874 B = 0.007032 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.506271 B = 3981.023687 C = 4312.247069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.522 3.478 3 O -0.607 6.607 4 N -0.643 5.643 5 C 0.124 3.876 6 C -0.100 4.100 7 C 0.130 3.870 8 C -0.112 4.112 9 C 0.184 3.816 10 N -0.625 5.625 11 C -0.243 4.243 12 H 0.077 0.923 13 C -0.061 4.061 14 N -0.948 5.948 15 Si 0.974 3.026 16 H -0.284 1.284 17 H -0.294 1.294 18 H -0.273 1.273 19 C 0.159 3.841 20 H 0.090 0.910 21 H 0.099 0.901 22 H 0.110 0.890 23 H 0.072 0.928 24 H 0.113 0.887 25 H 0.117 0.883 26 H 0.081 0.919 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.018 0.982 30 H 0.004 0.996 31 H 0.247 0.753 32 H 0.021 0.979 33 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.431 7.939 -8.008 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.315 3.685 3 O -0.490 6.490 4 N -0.378 5.378 5 C 0.001 3.999 6 C -0.102 4.102 7 C 0.009 3.991 8 C -0.151 4.151 9 C 0.059 3.941 10 N -0.351 5.351 11 C -0.372 4.372 12 H 0.095 0.905 13 C -0.255 4.255 14 N -0.597 5.597 15 Si 0.803 3.197 16 H -0.211 1.211 17 H -0.221 1.221 18 H -0.198 1.198 19 C 0.034 3.966 20 H 0.109 0.891 21 H 0.118 0.882 22 H 0.128 0.872 23 H 0.091 0.909 24 H 0.131 0.869 25 H 0.135 0.865 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.096 0.904 29 H 0.036 0.964 30 H 0.022 0.978 31 H 0.056 0.944 32 H 0.039 0.961 33 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.272 8.474 -7.908 12.044 hybrid contribution -0.069 -0.758 1.114 1.349 sum -3.342 7.716 -6.794 10.810 Atomic orbital electron populations 1.21822 0.88367 1.05640 1.06019 1.21247 0.91834 0.81221 0.74217 1.90666 1.72143 1.32234 1.53926 1.50499 1.09450 1.05944 1.71893 1.23027 0.83482 0.91638 1.01740 1.22288 0.97081 0.95074 0.95741 1.23177 0.97053 0.76910 1.01987 1.22524 1.00349 0.93260 0.98956 1.21004 0.96384 0.91828 0.84874 1.44845 1.77817 1.00937 1.11545 1.19396 1.36653 0.90436 0.90685 0.90511 1.25563 1.02425 0.96507 1.00963 1.70169 1.55028 1.03146 1.31355 0.85141 0.77666 0.77467 0.79429 1.21101 1.22082 1.19834 1.21129 0.97710 0.85208 0.92568 0.89086 0.88229 0.87176 0.90926 0.86917 0.86474 0.90015 0.88535 0.90387 0.96373 0.97774 0.94357 0.96147 0.94790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 10.34 71.23 0.74 -2.33 16 2 C 0.52 15.13 8.17 87.65 0.72 15.85 16 3 O -0.61 -22.80 17.82 -3.03 -0.05 -22.85 16 4 N -0.64 -17.48 3.63 -859.08 -3.12 -20.59 16 5 C 0.12 3.22 8.20 85.91 0.70 3.92 16 6 C -0.10 -3.00 0.99 -52.18 -0.05 -3.05 16 7 C 0.13 3.28 7.44 85.85 0.64 3.92 16 8 C -0.11 -3.52 6.36 31.36 0.20 -3.32 16 9 C 0.18 8.47 5.39 86.80 0.47 8.94 16 10 N -0.62 -30.94 3.41 -693.34 -2.36 -33.30 16 11 C -0.24 -13.38 10.28 84.03 0.86 -12.51 16 12 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 13 C -0.06 -3.42 5.49 84.86 0.47 -2.96 16 14 N -0.95 -55.52 10.30 21.65 0.22 -55.29 16 15 Si 0.97 45.07 29.55 68.60 2.03 47.09 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 19 C 0.16 6.29 6.63 86.28 0.57 6.86 16 20 H 0.09 1.48 7.26 -2.39 -0.02 1.46 16 21 H 0.10 1.79 8.14 -2.38 -0.02 1.77 16 22 H 0.11 1.71 8.14 -2.38 -0.02 1.70 16 23 H 0.07 2.03 8.12 -2.39 -0.02 2.01 16 24 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.12 2.29 8.04 -2.39 -0.02 2.27 16 26 H 0.08 2.20 8.00 -2.38 -0.02 2.18 16 27 H 0.10 2.45 7.99 -2.39 -0.02 2.43 16 28 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.02 0.93 7.38 -2.39 -0.02 0.91 16 30 H 0.00 0.21 7.49 -2.39 -0.02 0.19 16 31 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 32 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.03 1.37 8.07 -2.39 -0.02 1.35 16 Total: -1.00 -70.21 274.53 3.11 -67.11 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: 1.08 Total: 2.52 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 5.31 Total: 15.32 kcal Atomic # 7 Polarization: -103.93 SS G_CDS: -5.26 Total: -109.19 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.05 Total: -22.85 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -70.21 3.11 -67.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001640213911.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.672 kcal (2) G-P(sol) polarization free energy of solvation -70.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds