Wall clock time and date at job start Mon Mar 30 2020 02:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00203 * 2 1 4 4 C 1.53005 * 109.47273 * 124.99869 * 3 2 1 5 5 C 1.50701 * 109.46933 * 179.97438 * 4 3 2 6 6 O 1.21278 * 120.00389 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99914 * 179.97438 * 5 4 3 8 8 C 1.46493 * 120.00335 * 180.02562 * 7 5 4 9 9 C 1.53493 * 114.20968 * 155.00388 * 8 7 5 10 10 N 1.47058 * 87.98843 * 87.51984 * 9 8 7 11 11 C 1.36939 * 136.05576 * 206.86742 * 10 9 8 12 12 H 1.07999 * 120.00262 * 6.89608 * 11 10 9 13 13 C 1.38820 * 119.99870 * 186.90334 * 11 10 9 14 14 N 1.31623 * 119.99962 * 7.45800 * 13 11 10 15 15 Si 1.86800 * 119.99890 * 187.46108 * 13 11 10 16 16 H 1.48508 * 109.46943 * 94.79809 * 15 13 11 17 17 H 1.48498 * 109.46995 * 214.79830 * 15 13 11 18 18 H 1.48493 * 109.47191 * 334.80093 * 15 13 11 19 19 C 1.47065 * 87.88764 * 27.11926 * 10 9 8 20 20 H 1.07997 * 120.00315 * 179.97438 * 1 2 3 21 21 H 1.08005 * 119.99949 * 0.02562 * 1 2 3 22 22 H 1.08005 * 119.99949 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.47383 * 4.99671 * 3 2 1 24 24 H 1.09000 * 109.47384 * 244.99894 * 3 2 1 25 25 H 1.08997 * 109.47078 * 59.99615 * 4 3 2 26 26 H 1.09005 * 109.46888 * 299.99557 * 4 3 2 27 27 H 0.97005 * 119.99687 * 0.02562 * 7 5 4 28 28 H 1.09005 * 113.28462 * 21.93385 * 8 7 5 29 29 H 1.09000 * 113.46649 * 332.73137 * 9 8 7 30 30 H 1.09005 * 113.52085 * 202.30922 * 9 8 7 31 31 H 0.96998 * 119.99720 * 180.02562 * 14 13 11 32 32 H 1.09003 * 113.46183 * 87.65927 * 19 10 9 33 33 H 1.08992 * 113.47023 * 218.10216 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1817 5 6 3.7890 2.6379 1.1812 6 8 3.5705 3.4643 0.3209 7 7 4.7055 2.8870 2.1376 8 6 5.4380 4.1556 2.1376 9 6 5.9629 4.5793 3.5163 10 7 7.1725 3.7895 3.2411 11 6 8.1128 3.1331 3.9895 12 1 7.9828 3.0376 5.0574 13 6 9.2335 2.5906 3.3755 14 7 9.4679 2.8312 2.1029 15 14 10.4086 1.5190 4.3555 16 1 10.0475 0.0905 4.1699 17 1 11.7973 1.7444 3.8802 18 1 10.3150 1.8701 5.7953 19 6 6.9313 4.0201 1.8088 20 1 -0.5400 -0.9352 -0.0004 21 1 -0.5400 0.9354 -0.0004 22 1 1.8500 -0.9354 0.0004 23 1 1.3587 2.1316 0.0895 24 1 2.6213 1.4026 -0.9314 25 1 3.7399 0.5065 1.0922 26 1 2.4772 1.2357 2.1131 27 1 4.8800 2.2261 2.8259 28 1 4.9270 4.9482 1.5909 29 1 5.3700 4.1913 4.3445 30 1 6.1529 5.6495 3.5994 31 1 10.2508 2.4517 1.6738 32 1 7.3790 4.9413 1.4362 33 1 7.1618 3.1564 1.1853 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692177928.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:36 Heat of formation + Delta-G solvation = 31.184392 kcal Electronic energy + Delta-G solvation = -15017.656343 eV Core-core repulsion = 12466.636439 eV Total energy + Delta-G solvation = -2551.019904 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.58448 -37.76156 -35.33208 -33.23937 -31.92125 -30.54880 -27.60562 -24.68460 -24.61960 -22.86614 -20.15660 -19.83002 -19.27438 -16.88115 -16.58492 -15.72860 -15.31268 -14.96708 -14.66973 -13.87147 -13.73524 -13.43219 -12.86926 -12.65560 -12.43862 -12.06392 -11.53852 -11.36012 -11.09193 -11.02453 -10.88736 -10.62091 -10.23668 -9.93202 -9.60781 -9.42182 -9.33906 -8.83875 -8.32798 -6.94516 -5.82405 -3.14631 2.16323 3.02033 3.35369 3.40375 3.43165 3.64730 4.41746 4.80972 4.93284 5.12992 5.18947 5.27085 5.38204 5.42941 5.54250 5.66780 5.75613 5.95800 6.15067 6.16109 6.23721 6.40179 6.52093 6.53664 6.67875 6.83393 7.16818 7.31680 7.51588 7.91431 8.05669 8.67451 8.98380 9.65313 10.59529 11.35726 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034924 B = 0.005735 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.557831 B = 4880.952402 C = 5310.919288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.150 4.150 3 C -0.079 4.079 4 C -0.136 4.136 5 C 0.511 3.489 6 O -0.555 6.555 7 N -0.692 5.692 8 C 0.083 3.917 9 C 0.107 3.893 10 N -0.608 5.608 11 C -0.224 4.224 12 H 0.082 0.918 13 C -0.005 4.005 14 N -0.916 5.916 15 Si 0.912 3.088 16 H -0.288 1.288 17 H -0.291 1.291 18 H -0.280 1.280 19 C 0.149 3.851 20 H 0.095 0.905 21 H 0.096 0.904 22 H 0.109 0.891 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.404 0.596 28 H 0.096 0.904 29 H 0.043 0.957 30 H 0.044 0.956 31 H 0.254 0.746 32 H 0.038 0.962 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.782 -4.027 -1.054 14.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.168 4.168 3 C -0.117 4.117 4 C -0.176 4.176 5 C 0.297 3.703 6 O -0.433 6.433 7 N -0.341 5.341 8 C -0.024 4.024 9 C -0.020 4.020 10 N -0.335 5.335 11 C -0.351 4.351 12 H 0.099 0.901 13 C -0.202 4.202 14 N -0.562 5.562 15 Si 0.742 3.258 16 H -0.215 1.215 17 H -0.217 1.217 18 H -0.205 1.205 19 C 0.022 3.978 20 H 0.113 0.887 21 H 0.114 0.886 22 H 0.127 0.873 23 H 0.092 0.908 24 H 0.099 0.901 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.239 0.761 28 H 0.114 0.886 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.604 -3.611 -1.589 14.164 hybrid contribution 1.058 -0.825 0.865 1.596 sum -12.546 -4.436 -0.723 13.327 Atomic orbital electron populations 1.23843 0.95985 1.01704 1.02080 1.23037 0.96074 0.98594 0.99075 1.20500 0.97783 0.95045 0.98333 1.21603 0.98984 0.96250 1.00760 1.20601 0.79717 0.88720 0.81243 1.90657 1.66908 1.48375 1.37396 1.45509 1.38966 1.19666 1.29986 1.22596 0.94464 0.85887 0.99405 1.22781 0.89189 0.95586 0.94425 1.45847 1.27914 1.57030 1.02692 1.18952 0.98587 1.26632 0.90974 0.90071 1.24848 0.97545 1.01391 0.96455 1.69871 1.28792 1.47340 1.10222 0.86109 0.80367 0.80347 0.78957 1.21541 1.21694 1.20548 1.22429 0.87719 0.99450 0.88181 0.88692 0.88591 0.87346 0.90820 0.90136 0.88787 0.89087 0.76099 0.88584 0.93882 0.93806 0.93574 0.94402 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.79 14.32 29.02 0.42 -1.37 16 2 C -0.15 -1.47 9.52 -36.03 -0.34 -1.81 16 3 C -0.08 -0.92 4.95 -27.88 -0.14 -1.06 16 4 C -0.14 -1.63 5.68 -27.88 -0.16 -1.79 16 5 C 0.51 8.40 7.83 -10.98 -0.09 8.32 16 6 O -0.55 -10.95 15.57 5.56 0.09 -10.87 16 7 N -0.69 -11.93 5.39 -53.62 -0.29 -12.22 16 8 C 0.08 1.61 4.61 -67.82 -0.31 1.30 16 9 C 0.11 2.14 8.45 -8.52 -0.07 2.07 16 10 N -0.61 -15.24 3.76 -184.80 -0.70 -15.93 16 11 C -0.22 -6.15 10.73 -15.06 -0.16 -6.31 16 12 H 0.08 2.14 7.84 -52.49 -0.41 1.72 16 13 C 0.00 -0.14 5.49 -17.43 -0.10 -0.24 16 14 N -0.92 -27.24 11.86 55.49 0.66 -26.58 16 15 Si 0.91 21.77 29.56 -169.99 -5.02 16.75 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 C 0.15 3.56 7.02 -8.51 -0.06 3.50 16 20 H 0.09 0.72 8.06 -52.49 -0.42 0.30 16 21 H 0.10 0.84 7.84 -52.48 -0.41 0.42 16 22 H 0.11 0.95 8.06 -52.48 -0.42 0.53 16 23 H 0.07 0.90 7.75 -51.93 -0.40 0.50 16 24 H 0.08 1.03 8.10 -51.93 -0.42 0.61 16 25 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 26 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.40 6.57 8.76 -40.82 -0.36 6.21 16 28 H 0.10 1.82 7.45 -51.93 -0.39 1.43 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 32 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.06 1.65 7.63 -51.93 -0.40 1.26 16 LS Contribution 286.58 15.07 4.32 4.32 Total: -1.00 -31.85 286.58 -6.84 -38.69 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -4.88 Total: 3.25 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.01 Total: 2.60 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: -0.33 Total: -54.74 kcal Atomic # 8 Polarization: -10.95 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.85 -6.84 -38.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692177928.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.871 kcal (2) G-P(sol) polarization free energy of solvation -31.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds