Wall clock time and date at job start Mon Mar 30 2020 02:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 120.00203 * 2 1 4 4 C 1.53005 * 109.47273 * 124.99869 * 3 2 1 5 5 C 1.50701 * 109.46933 * 179.97438 * 4 3 2 6 6 O 1.21278 * 120.00389 * 0.02562 * 5 4 3 7 7 N 1.34778 * 119.99914 * 179.97438 * 5 4 3 8 8 C 1.46493 * 120.00335 * 180.02562 * 7 5 4 9 9 C 1.53493 * 114.20968 * 155.00388 * 8 7 5 10 10 N 1.47058 * 87.98843 * 87.51984 * 9 8 7 11 11 C 1.36939 * 136.05576 * 206.86742 * 10 9 8 12 12 H 1.07999 * 120.00262 * 6.89608 * 11 10 9 13 13 C 1.38820 * 119.99870 * 186.90334 * 11 10 9 14 14 N 1.31623 * 119.99962 * 7.45800 * 13 11 10 15 15 Si 1.86800 * 119.99890 * 187.46108 * 13 11 10 16 16 H 1.48508 * 109.46943 * 94.79809 * 15 13 11 17 17 H 1.48498 * 109.46995 * 214.79830 * 15 13 11 18 18 H 1.48493 * 109.47191 * 334.80093 * 15 13 11 19 19 C 1.47065 * 87.88764 * 27.11926 * 10 9 8 20 20 H 1.07997 * 120.00315 * 179.97438 * 1 2 3 21 21 H 1.08005 * 119.99949 * 0.02562 * 1 2 3 22 22 H 1.08005 * 119.99949 * 179.97438 * 2 1 3 23 23 H 1.08997 * 109.47383 * 4.99671 * 3 2 1 24 24 H 1.09000 * 109.47384 * 244.99894 * 3 2 1 25 25 H 1.08997 * 109.47078 * 59.99615 * 4 3 2 26 26 H 1.09005 * 109.46888 * 299.99557 * 4 3 2 27 27 H 0.97005 * 119.99687 * 0.02562 * 7 5 4 28 28 H 1.09005 * 113.28462 * 21.93385 * 8 7 5 29 29 H 1.09000 * 113.46649 * 332.73137 * 9 8 7 30 30 H 1.09005 * 113.52085 * 202.30922 * 9 8 7 31 31 H 0.96998 * 119.99720 * 180.02562 * 14 13 11 32 32 H 1.09003 * 113.46183 * 87.65927 * 19 10 9 33 33 H 1.08992 * 113.47023 * 218.10216 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1817 5 6 3.7890 2.6379 1.1812 6 8 3.5705 3.4643 0.3209 7 7 4.7055 2.8870 2.1376 8 6 5.4380 4.1556 2.1376 9 6 5.9629 4.5793 3.5163 10 7 7.1725 3.7895 3.2411 11 6 8.1128 3.1331 3.9895 12 1 7.9828 3.0376 5.0574 13 6 9.2335 2.5906 3.3755 14 7 9.4679 2.8312 2.1029 15 14 10.4086 1.5190 4.3555 16 1 10.0475 0.0905 4.1699 17 1 11.7973 1.7444 3.8802 18 1 10.3150 1.8701 5.7953 19 6 6.9313 4.0201 1.8088 20 1 -0.5400 -0.9352 -0.0004 21 1 -0.5400 0.9354 -0.0004 22 1 1.8500 -0.9354 0.0004 23 1 1.3587 2.1316 0.0895 24 1 2.6213 1.4026 -0.9314 25 1 3.7399 0.5065 1.0922 26 1 2.4772 1.2357 2.1131 27 1 4.8800 2.2261 2.8259 28 1 4.9270 4.9482 1.5909 29 1 5.3700 4.1913 4.3445 30 1 6.1529 5.6495 3.5994 31 1 10.2508 2.4517 1.6738 32 1 7.3790 4.9413 1.4362 33 1 7.1618 3.1564 1.1853 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692177928.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:36 Heat of formation + Delta-G solvation = 9.538940 kcal Electronic energy + Delta-G solvation = -15018.594961 eV Core-core repulsion = 12466.636439 eV Total energy + Delta-G solvation = -2551.958521 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 224.127 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.06232 -39.38248 -36.23240 -34.92630 -33.76514 -31.54944 -29.51006 -26.41701 -25.95858 -24.52957 -21.49879 -20.97422 -20.60291 -18.74742 -17.98783 -16.96079 -16.90178 -16.60560 -15.83066 -15.57805 -15.20161 -14.75650 -14.44511 -14.22802 -13.50601 -13.36214 -13.20823 -12.97791 -12.78283 -12.41980 -12.11679 -11.96958 -11.86517 -11.77456 -11.28741 -11.00020 -10.80410 -10.17856 -9.87979 -8.97234 -7.93224 -5.26607 1.43285 1.46948 1.48416 1.57705 1.69556 2.31934 2.46955 3.29941 3.43694 3.78231 3.82111 4.03994 4.23102 4.39186 4.49749 4.51572 4.57538 4.72440 4.79938 4.91614 4.97121 5.10646 5.14237 5.19503 5.26656 5.45498 5.72683 5.79998 5.87566 5.94843 6.68693 6.87394 7.33267 7.58321 8.58292 9.25561 Molecular weight = 224.13amu Principal moments of inertia in cm(-1) A = 0.034924 B = 0.005735 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.557831 B = 4880.952402 C = 5310.919288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 C -0.076 4.076 4 C -0.126 4.126 5 C 0.508 3.492 6 O -0.590 6.590 7 N -0.692 5.692 8 C 0.108 3.892 9 C 0.115 3.885 10 N -0.632 5.632 11 C -0.229 4.229 12 H 0.092 0.908 13 C -0.067 4.067 14 N -0.956 5.956 15 Si 0.981 3.019 16 H -0.285 1.285 17 H -0.300 1.300 18 H -0.264 1.264 19 C 0.144 3.856 20 H 0.112 0.888 21 H 0.096 0.904 22 H 0.121 0.879 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.108 0.892 26 H 0.118 0.882 27 H 0.411 0.589 28 H 0.105 0.895 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.247 0.753 32 H 0.022 0.978 33 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.254 -5.102 0.425 16.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.178 4.178 3 C -0.114 4.114 4 C -0.165 4.165 5 C 0.297 3.703 6 O -0.471 6.471 7 N -0.341 5.341 8 C 0.001 3.999 9 C -0.011 4.011 10 N -0.359 5.359 11 C -0.357 4.357 12 H 0.110 0.890 13 C -0.260 4.260 14 N -0.605 5.605 15 Si 0.809 3.191 16 H -0.212 1.212 17 H -0.227 1.227 18 H -0.188 1.188 19 C 0.017 3.983 20 H 0.131 0.869 21 H 0.114 0.886 22 H 0.139 0.861 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.126 0.874 26 H 0.137 0.863 27 H 0.247 0.753 28 H 0.122 0.878 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.040 0.960 33 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -15.119 -4.688 -0.074 15.829 hybrid contribution 1.435 -0.438 0.383 1.548 sum -13.684 -5.126 0.308 14.616 Atomic orbital electron populations 1.24039 0.95799 1.02600 1.00346 1.22979 0.96340 0.97929 1.00578 1.20437 0.97505 0.96068 0.97383 1.21633 0.98991 0.93658 1.02240 1.21420 0.79127 0.89764 0.79983 1.90643 1.67905 1.49949 1.38586 1.45527 1.38875 1.19107 1.30587 1.22239 0.91782 0.87173 0.98720 1.22879 0.87038 0.95778 0.95402 1.46113 1.28646 1.57924 1.03191 1.19404 0.98667 1.25904 0.91678 0.89027 1.25704 0.99616 1.03245 0.97412 1.70068 1.29271 1.49044 1.12079 0.85024 0.77398 0.78431 0.78232 1.21180 1.22682 1.18827 1.22401 0.91184 0.97161 0.87542 0.86935 0.88599 0.86098 0.91722 0.91935 0.87368 0.86348 0.75318 0.87773 0.91461 0.92428 0.94379 0.96020 0.95555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.95 14.32 67.78 0.97 -1.98 16 2 C -0.16 -2.79 9.52 25.65 0.24 -2.55 16 3 C -0.08 -1.69 4.95 29.85 0.15 -1.54 16 4 C -0.13 -2.76 5.68 29.85 0.17 -2.59 16 5 C 0.51 16.15 7.83 87.66 0.69 16.84 16 6 O -0.59 -23.12 15.57 -3.02 -0.05 -23.17 16 7 N -0.69 -22.95 5.39 -441.95 -2.38 -25.33 16 8 C 0.11 4.11 4.61 45.47 0.21 4.32 16 9 C 0.11 4.38 8.45 83.18 0.70 5.08 16 10 N -0.63 -31.42 3.76 -738.58 -2.78 -34.21 16 11 C -0.23 -12.39 10.73 84.04 0.90 -11.49 16 12 H 0.09 4.66 7.84 -2.91 -0.02 4.64 16 13 C -0.07 -3.74 5.49 84.86 0.47 -3.28 16 14 N -0.96 -58.26 11.86 21.65 0.26 -58.00 16 15 Si 0.98 44.81 29.56 68.60 2.03 46.84 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.30 -14.02 7.11 99.48 0.71 -13.31 16 18 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 19 C 0.14 7.04 7.02 83.18 0.58 7.62 16 20 H 0.11 1.35 8.06 -2.91 -0.02 1.33 16 21 H 0.10 1.47 7.84 -2.91 -0.02 1.45 16 22 H 0.12 1.80 8.06 -2.91 -0.02 1.78 16 23 H 0.06 1.53 7.75 -2.39 -0.02 1.51 16 24 H 0.06 1.59 8.10 -2.39 -0.02 1.57 16 25 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 26 H 0.12 2.00 8.14 -2.38 -0.02 1.98 16 27 H 0.41 12.60 8.76 -92.70 -0.81 11.78 16 28 H 0.10 3.85 7.45 -2.38 -0.02 3.83 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 32 H 0.02 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.03 1.44 7.63 -2.39 -0.02 1.43 16 Total: -1.00 -68.95 286.58 2.43 -66.52 By element: Atomic # 1 Polarization: 16.64 SS G_CDS: 0.27 Total: 16.91 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 5.08 Total: 10.44 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -4.90 Total: -117.54 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -0.05 Total: -23.17 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -68.95 2.43 -66.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692177928.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.059 kcal (2) G-P(sol) polarization free energy of solvation -68.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds