Wall clock time and date at job start Mon Mar 30 2020 03:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 110.44123 * 2 1 4 4 O 1.44311 * 110.39482 * 237.63380 * 2 1 3 5 Xx 1.43474 * 104.66269 * 264.87349 * 4 2 1 6 5 C 1.56997 * 127.55831 * 140.44513 * 5 4 2 7 6 H 1.09000 * 115.55332 * 214.23548 * 6 5 4 8 7 C 1.52999 * 117.49911 * 68.56524 * 6 5 4 9 8 C 1.52991 * 60.00165 * 252.51233 * 8 6 5 10 9 C 1.50707 * 117.50040 * 252.50763 * 9 8 6 11 10 N 1.27943 * 119.99685 * 43.62325 * 10 9 8 12 11 Si 1.86792 * 120.00265 * 223.62036 * 10 9 8 13 12 H 1.48501 * 109.47045 * 0.02562 * 12 10 9 14 13 H 1.48503 * 109.46853 * 119.99667 * 12 10 9 15 14 H 1.48497 * 109.47615 * 239.99942 * 12 10 9 16 15 O 1.43477 * 104.88930 * 320.41121 * 5 4 2 17 16 C 1.44317 * 104.65964 * 39.58874 * 16 5 4 18 17 C 1.53000 * 110.39052 * 217.51787 * 17 16 5 19 18 C 1.53003 * 110.39303 * 95.12839 * 17 16 5 20 19 H 1.08996 * 109.47782 * 297.64801 * 1 2 3 21 20 H 1.09002 * 109.47043 * 57.64712 * 1 2 3 22 21 H 1.09003 * 109.47349 * 177.64166 * 1 2 3 23 22 H 1.08999 * 109.47195 * 182.35881 * 3 2 1 24 23 H 1.09006 * 109.46415 * 302.35695 * 3 2 1 25 24 H 1.08997 * 109.47173 * 62.34903 * 3 2 1 26 25 H 1.09008 * 117.49590 * 0.02562 * 8 6 5 27 26 H 1.09000 * 117.50260 * 144.99708 * 8 6 5 28 27 H 1.09005 * 117.50121 * 107.48858 * 9 8 6 29 28 H 0.97000 * 119.99914 * 179.97438 * 11 10 9 30 29 H 1.09008 * 109.47062 * 175.27557 * 18 17 16 31 30 H 1.08996 * 109.47090 * 295.28022 * 18 17 16 32 31 H 1.08998 * 109.47088 * 55.28155 * 18 17 16 33 32 H 1.09000 * 109.46775 * 304.71972 * 19 17 16 34 33 H 1.08999 * 109.47069 * 64.72439 * 19 17 16 35 34 H 1.09005 * 109.46926 * 184.71704 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0643 1.4337 0.0000 4 8 2.0329 -0.7241 -1.1425 5 6 2.0009 -3.4085 -1.3925 6 1 1.6921 -4.2368 -0.7549 7 6 2.8681 -3.7387 -2.6090 8 6 1.4038 -3.3386 -2.7994 9 6 0.4330 -4.4203 -3.1979 10 7 0.4809 -5.5646 -2.6276 11 14 -0.8403 -4.0904 -4.5242 12 1 -0.6869 -2.7000 -5.0227 13 1 -0.6438 -5.0427 -5.6467 14 1 -2.2018 -4.2665 -3.9583 15 8 2.8254 -1.8653 0.6588 16 6 2.0673 -0.7737 1.2213 17 6 2.9730 0.1251 2.0655 18 6 0.9087 -1.3085 2.0655 19 1 -0.3634 0.4768 0.9102 20 1 -0.3633 0.5499 -0.8682 21 1 -0.3634 -1.0268 -0.0423 22 1 3.1534 1.4155 -0.0423 23 1 1.6758 1.9661 -0.8682 24 1 1.7444 1.9407 0.9103 25 1 3.6297 -3.0135 -2.8959 26 1 3.1298 -4.7842 -2.7717 27 1 1.2016 -2.3501 -3.2119 28 1 -0.1441 -6.2607 -2.8838 29 1 2.4057 0.9884 2.4135 30 1 3.3440 -0.4358 2.9232 31 1 3.8147 0.4632 1.4610 32 1 0.2980 -1.9791 1.4609 33 1 1.3048 -1.8519 2.9233 34 1 0.2980 -0.4755 2.4136 There are 40 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 40 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238175754.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:20 Heat of formation + Delta-G solvation = 160.892029 kcal Electronic energy + Delta-G solvation = -14939.290229 eV Core-core repulsion = 12462.516781 eV Total energy + Delta-G solvation = -2476.773448 eV No. of doubly occupied orbitals = 40 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -39.51893 -39.05223 -35.35940 -33.72850 -31.54159 -29.80656 -29.45420 -26.32055 -26.25453 -23.02916 -22.85818 -20.80668 -18.44407 -18.11362 -16.73266 -16.48339 -16.05795 -15.50484 -15.20455 -14.82075 -14.10735 -14.05413 -13.69494 -13.50048 -13.36559 -13.12526 -12.81687 -12.79091 -12.75656 -12.47428 -12.17880 -12.11600 -12.05260 -11.74153 -11.63504 -11.58763 -10.46308 -9.83909 -9.52799 -8.91437 -5.31913 -2.17062 0.21297 0.68181 1.19754 1.37155 1.61148 2.24008 2.80710 2.84053 3.02520 3.55209 3.89806 4.13403 4.16222 4.25001 4.25907 4.36325 4.45157 4.50438 4.62546 4.71862 4.73386 4.80749 4.93410 4.95959 4.98168 5.19226 5.20353 5.29287 5.37845 5.54006 5.74790 6.05032 6.27366 6.59473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.151 3.849 3 C -0.145 4.145 4 O -0.531 6.531 5 C 0.230 3.770 6 H 0.187 0.813 7 C -0.147 4.147 8 C -0.132 4.132 9 C 0.009 3.991 10 N -0.634 5.634 11 Si 0.958 3.042 12 H -0.227 1.227 13 H -0.238 1.238 14 H -0.237 1.237 15 O -0.515 6.515 16 C 0.147 3.853 17 C -0.146 4.146 18 C -0.153 4.153 19 H 0.061 0.939 20 H 0.065 0.935 21 H 0.062 0.938 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.149 0.851 26 H 0.142 0.858 27 H 0.166 0.834 28 H 0.354 0.646 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.523 -2.785 -3.187 5.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.091 3.909 3 C -0.202 4.202 4 O -0.466 6.466 5 C 0.208 3.792 6 H 0.203 0.797 7 C -0.184 4.184 8 C -0.150 4.150 9 C -0.237 4.237 10 N -0.249 5.249 11 Si 0.771 3.229 12 H -0.149 1.149 13 H -0.161 1.161 14 H -0.160 1.160 15 O -0.451 6.451 16 C 0.086 3.914 17 C -0.203 4.203 18 C -0.211 4.211 19 H 0.080 0.920 20 H 0.084 0.916 21 H 0.081 0.919 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.166 0.834 26 H 0.159 0.841 27 H 0.183 0.817 28 H 0.172 0.828 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.264 -3.518 -3.508 5.945 hybrid contribution -0.438 0.316 0.098 0.549 sum -3.702 -3.202 -3.410 5.965 Atomic orbital electron populations 1.22525 0.94359 1.02432 1.01883 1.23233 0.91223 0.89209 0.87239 1.22428 1.02542 0.93465 1.01769 1.94985 1.79883 1.48947 1.22832 1.35181 1.01631 0.60947 0.81436 0.79669 1.24573 0.93002 1.04890 0.95897 1.23132 0.93957 1.00129 0.97800 1.29889 1.00235 0.93212 1.00374 1.68004 1.26600 1.03277 1.26985 0.85331 0.76923 0.83907 0.76712 1.14894 1.16114 1.16026 1.95029 1.67021 1.43037 1.40042 1.23306 0.92100 0.90815 0.85195 1.22434 0.99730 0.99235 0.98904 1.22519 0.98177 1.01153 0.99207 0.91963 0.91620 0.91899 0.91409 0.91548 0.91917 0.83362 0.84051 0.81653 0.82791 0.91886 0.91538 0.91397 0.91894 0.91583 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 87. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.35 7.79 37.16 0.29 -0.07 16 2 C 0.15 0.75 1.57 -89.97 -0.14 0.61 16 3 C -0.14 -0.49 7.79 37.16 0.29 -0.20 16 4 O -0.53 -4.00 14.18 -59.50 -0.84 -4.84 16 5 C 0.23 -0.14 10.34 -26.73 -0.28 -0.42 16 6 H 0.19 -0.43 7.82 -51.93 -0.41 -0.84 16 7 C -0.15 0.47 10.11 -26.74 -0.27 0.20 16 8 C -0.13 0.37 5.66 -91.77 -0.52 -0.15 16 9 C 0.01 -0.03 5.45 -13.89 -0.08 -0.11 16 10 N -0.63 1.92 13.03 56.23 0.73 2.65 16 11 Si 0.96 -3.75 29.58 -169.99 -5.03 -8.77 16 12 H -0.23 0.71 7.11 56.52 0.40 1.11 16 13 H -0.24 0.74 7.11 56.52 0.40 1.14 16 14 H -0.24 0.68 7.11 56.52 0.40 1.08 16 15 O -0.52 -4.49 14.24 -59.50 -0.85 -5.34 16 16 C 0.15 0.78 1.57 -89.97 -0.14 0.64 16 17 C -0.15 -0.55 7.79 37.16 0.29 -0.26 16 18 C -0.15 -0.43 7.79 37.16 0.29 -0.14 16 19 H 0.06 0.04 6.81 -51.93 -0.35 -0.31 16 20 H 0.07 0.13 8.14 -51.93 -0.42 -0.30 16 21 H 0.06 0.13 6.81 -51.93 -0.35 -0.22 16 22 H 0.07 0.30 6.81 -51.93 -0.35 -0.06 16 23 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 24 H 0.06 0.08 6.81 -51.93 -0.35 -0.27 16 25 H 0.15 -0.45 8.14 -51.92 -0.42 -0.87 16 26 H 0.14 -0.67 8.14 -51.93 -0.42 -1.10 16 27 H 0.17 -0.47 7.90 -51.93 -0.41 -0.88 16 28 H 0.35 -1.56 8.23 -40.82 -0.34 -1.89 16 29 H 0.06 0.09 6.81 -51.92 -0.35 -0.26 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.32 6.81 -51.93 -0.35 -0.04 16 32 H 0.06 0.16 6.81 -51.93 -0.35 -0.19 16 33 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.06 0.06 6.81 -51.93 -0.35 -0.30 16 LS Contribution 285.44 15.07 4.30 4.30 Total: 0.00 -9.46 285.44 -7.26 -16.72 By element: Atomic # 1 Polarization: 0.48 SS G_CDS: -5.31 Total: -4.84 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -0.27 Total: 0.11 kcal Atomic # 7 Polarization: 1.92 SS G_CDS: 0.73 Total: 2.65 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -1.69 Total: -10.18 kcal Atomic # 14 Polarization: -3.75 SS G_CDS: -5.03 Total: -8.77 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -9.46 -7.26 -16.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238175754.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.613 kcal (2) G-P(sol) polarization free energy of solvation -9.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds