Wall clock time and date at job start Mon Mar 30 2020 03:25:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 110.44123 * 2 1 4 4 O 1.44311 * 110.39482 * 237.63380 * 2 1 3 5 Xx 1.43474 * 104.66269 * 264.87349 * 4 2 1 6 5 C 1.56997 * 127.55831 * 140.44513 * 5 4 2 7 6 H 1.09000 * 115.55332 * 214.23548 * 6 5 4 8 7 C 1.52999 * 117.49911 * 68.56524 * 6 5 4 9 8 C 1.52991 * 60.00165 * 252.51233 * 8 6 5 10 9 C 1.50707 * 117.50040 * 252.50763 * 9 8 6 11 10 N 1.27943 * 119.99685 * 43.62325 * 10 9 8 12 11 Si 1.86792 * 120.00265 * 223.62036 * 10 9 8 13 12 H 1.48501 * 109.47045 * 0.02562 * 12 10 9 14 13 H 1.48503 * 109.46853 * 119.99667 * 12 10 9 15 14 H 1.48497 * 109.47615 * 239.99942 * 12 10 9 16 15 O 1.43477 * 104.88930 * 320.41121 * 5 4 2 17 16 C 1.44317 * 104.65964 * 39.58874 * 16 5 4 18 17 C 1.53000 * 110.39052 * 217.51787 * 17 16 5 19 18 C 1.53003 * 110.39303 * 95.12839 * 17 16 5 20 19 H 1.08996 * 109.47782 * 297.64801 * 1 2 3 21 20 H 1.09002 * 109.47043 * 57.64712 * 1 2 3 22 21 H 1.09003 * 109.47349 * 177.64166 * 1 2 3 23 22 H 1.08999 * 109.47195 * 182.35881 * 3 2 1 24 23 H 1.09006 * 109.46415 * 302.35695 * 3 2 1 25 24 H 1.08997 * 109.47173 * 62.34903 * 3 2 1 26 25 H 1.09008 * 117.49590 * 0.02562 * 8 6 5 27 26 H 1.09000 * 117.50260 * 144.99708 * 8 6 5 28 27 H 1.09005 * 117.50121 * 107.48858 * 9 8 6 29 28 H 0.97000 * 119.99914 * 179.97438 * 11 10 9 30 29 H 1.09008 * 109.47062 * 175.27557 * 18 17 16 31 30 H 1.08996 * 109.47090 * 295.28022 * 18 17 16 32 31 H 1.08998 * 109.47088 * 55.28155 * 18 17 16 33 32 H 1.09000 * 109.46775 * 304.71972 * 19 17 16 34 33 H 1.08999 * 109.47069 * 64.72439 * 19 17 16 35 34 H 1.09005 * 109.46926 * 184.71704 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0643 1.4337 0.0000 4 8 2.0329 -0.7241 -1.1425 5 6 2.0009 -3.4085 -1.3925 6 1 1.6921 -4.2368 -0.7549 7 6 2.8681 -3.7387 -2.6090 8 6 1.4038 -3.3386 -2.7994 9 6 0.4330 -4.4203 -3.1979 10 7 0.4809 -5.5646 -2.6276 11 14 -0.8403 -4.0904 -4.5242 12 1 -0.6869 -2.7000 -5.0227 13 1 -0.6438 -5.0427 -5.6467 14 1 -2.2018 -4.2665 -3.9583 15 8 2.8254 -1.8653 0.6588 16 6 2.0673 -0.7737 1.2213 17 6 2.9730 0.1251 2.0655 18 6 0.9087 -1.3085 2.0655 19 1 -0.3634 0.4768 0.9102 20 1 -0.3633 0.5499 -0.8682 21 1 -0.3634 -1.0268 -0.0423 22 1 3.1534 1.4155 -0.0423 23 1 1.6758 1.9661 -0.8682 24 1 1.7444 1.9407 0.9103 25 1 3.6297 -3.0135 -2.8959 26 1 3.1298 -4.7842 -2.7717 27 1 1.2016 -2.3501 -3.2119 28 1 -0.1441 -6.2607 -2.8838 29 1 2.4057 0.9884 2.4135 30 1 3.3440 -0.4358 2.9232 31 1 3.8147 0.4632 1.4610 32 1 0.2980 -1.9791 1.4609 33 1 1.3048 -1.8519 2.9233 34 1 0.2980 -0.4755 2.4136 There are 40 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 40 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238175754.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:18 Heat of formation + Delta-G solvation = 157.292018 kcal Electronic energy + Delta-G solvation = -14939.446337 eV Core-core repulsion = 12462.516781 eV Total energy + Delta-G solvation = -2476.929556 eV No. of doubly occupied orbitals = 40 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 1.96 seconds Orbital eigenvalues (eV) -39.57362 -39.13097 -35.28032 -33.79478 -31.63157 -29.96591 -29.57975 -26.48677 -26.17962 -23.11270 -22.99279 -20.71395 -18.59033 -17.95638 -16.69763 -16.57767 -16.23762 -15.47534 -15.29857 -14.60289 -14.26615 -13.92433 -13.84659 -13.49006 -13.36744 -13.26568 -13.00622 -12.93995 -12.74416 -12.35253 -12.27607 -12.22859 -12.05979 -11.84588 -11.79759 -11.51656 -10.30933 -9.91434 -9.59683 -9.18024 -5.54451 -2.19139 0.37807 0.92560 1.50559 1.64120 1.90928 2.16252 2.59654 2.84153 3.02197 3.55248 3.79980 3.99564 4.09440 4.20193 4.23597 4.33385 4.41186 4.57271 4.57603 4.61218 4.65356 4.74152 4.77894 4.78761 4.80517 5.01243 5.02242 5.11160 5.18574 5.38600 5.59361 6.04339 6.49422 6.60200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.139 3.861 3 C -0.146 4.146 4 O -0.617 6.617 5 C 0.286 3.714 6 H 0.223 0.777 7 C -0.122 4.122 8 C -0.117 4.117 9 C 0.016 3.984 10 N -0.635 5.635 11 Si 1.000 3.000 12 H -0.240 1.240 13 H -0.244 1.244 14 H -0.252 1.252 15 O -0.630 6.630 16 C 0.139 3.861 17 C -0.147 4.147 18 C -0.146 4.146 19 H 0.075 0.925 20 H 0.063 0.937 21 H 0.060 0.940 22 H 0.043 0.957 23 H 0.061 0.939 24 H 0.077 0.923 25 H 0.161 0.839 26 H 0.184 0.816 27 H 0.176 0.824 28 H 0.366 0.634 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.561 -5.716 -5.310 9.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.082 3.918 3 C -0.203 4.203 4 O -0.557 6.557 5 C 0.265 3.735 6 H 0.239 0.761 7 C -0.158 4.158 8 C -0.135 4.135 9 C -0.230 4.230 10 N -0.252 5.252 11 Si 0.815 3.185 12 H -0.162 1.162 13 H -0.167 1.167 14 H -0.176 1.176 15 O -0.570 6.570 16 C 0.081 3.919 17 C -0.204 4.204 18 C -0.203 4.203 19 H 0.093 0.907 20 H 0.082 0.918 21 H 0.079 0.921 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.095 0.905 25 H 0.179 0.821 26 H 0.201 0.799 27 H 0.193 0.807 28 H 0.187 0.813 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.326 -6.446 -5.610 9.579 hybrid contribution -0.161 0.638 0.273 0.712 sum -4.487 -5.808 -5.337 9.075 Atomic orbital electron populations 1.22474 0.93269 1.02290 1.02375 1.23203 0.91939 0.89192 0.87472 1.22428 1.00984 0.94719 1.02178 1.94856 1.79456 1.55115 1.26300 1.35162 1.06684 0.49952 0.81661 0.76118 1.25139 0.92822 1.07275 0.90532 1.23555 0.94863 1.01312 0.93769 1.29781 0.99818 0.92687 1.00723 1.67953 1.26824 1.03487 1.26893 0.84685 0.75506 0.82741 0.75528 1.16211 1.16748 1.17552 1.94919 1.69409 1.43433 1.49274 1.23200 0.92397 0.90612 0.85643 1.22438 0.99586 0.99943 0.98471 1.22475 0.97818 1.01467 0.98543 0.90660 0.91824 0.92096 0.93758 0.91972 0.90459 0.82124 0.79901 0.80721 0.81348 0.90275 0.92424 0.93679 0.92097 0.92398 0.90406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 108. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 7.79 71.98 0.56 -0.45 16 2 C 0.14 1.92 1.57 -10.37 -0.02 1.90 16 3 C -0.15 -1.64 7.79 71.98 0.56 -1.08 16 4 O -0.62 -11.49 14.18 -125.78 -1.78 -13.28 16 5 C 0.29 -1.15 10.34 30.59 0.32 -0.83 16 6 H 0.22 -1.98 7.82 -2.39 -0.02 -2.00 16 7 C -0.12 1.35 10.11 30.59 0.31 1.66 16 8 C -0.12 1.09 5.66 -11.54 -0.07 1.03 16 9 C 0.02 -0.18 5.45 88.68 0.48 0.31 16 10 N -0.64 6.79 13.03 24.11 0.31 7.11 16 11 Si 1.00 -10.56 29.58 68.60 2.03 -8.53 16 12 H -0.24 1.98 7.11 99.48 0.71 2.69 16 13 H -0.24 2.24 7.11 99.48 0.71 2.94 16 14 H -0.25 1.96 7.11 99.48 0.71 2.67 16 15 O -0.63 -13.77 14.24 -125.78 -1.79 -15.56 16 16 C 0.14 2.08 1.57 -10.37 -0.02 2.06 16 17 C -0.15 -1.84 7.79 71.98 0.56 -1.28 16 18 C -0.15 -1.23 7.79 71.98 0.56 -0.67 16 19 H 0.07 0.23 6.81 -2.39 -0.02 0.21 16 20 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 21 H 0.06 0.36 6.81 -2.39 -0.02 0.34 16 22 H 0.04 0.65 6.81 -2.39 -0.02 0.63 16 23 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 24 H 0.08 0.48 6.81 -2.39 -0.02 0.47 16 25 H 0.16 -1.62 8.14 -2.38 -0.02 -1.64 16 26 H 0.18 -3.03 8.14 -2.39 -0.02 -3.05 16 27 H 0.18 -1.47 7.90 -2.38 -0.02 -1.49 16 28 H 0.37 -4.78 8.23 -92.71 -0.76 -5.54 16 29 H 0.08 0.55 6.81 -2.38 -0.02 0.53 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.04 0.70 6.81 -2.39 -0.02 0.69 16 32 H 0.06 0.44 6.81 -2.39 -0.02 0.43 16 33 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.08 0.30 6.81 -2.38 -0.02 0.28 16 Total: 0.00 -30.39 285.44 3.10 -27.30 By element: Atomic # 1 Polarization: -0.77 SS G_CDS: 1.07 Total: 0.31 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: 3.25 Total: 2.66 kcal Atomic # 7 Polarization: 6.79 SS G_CDS: 0.31 Total: 7.11 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -3.57 Total: -28.84 kcal Atomic # 14 Polarization: -10.56 SS G_CDS: 2.03 Total: -8.53 kcal Total: -30.39 3.10 -27.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238175754.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.590 kcal (2) G-P(sol) polarization free energy of solvation -30.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds