Wall clock time and date at job start Mon Mar 30 2020 03:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.80605 * 2 1 4 4 C 1.53374 * 109.63997 * 120.52353 * 2 1 3 5 5 C 1.53043 * 108.00481 * 58.44039 * 4 2 1 6 6 H 1.08997 * 109.21335 * 296.30781 * 5 4 2 7 7 C 1.50695 * 109.21573 * 176.93174 * 5 4 2 8 8 H 1.08004 * 120.00546 * 240.27893 * 7 5 4 9 9 C 1.37885 * 119.99721 * 60.00144 * 7 5 4 10 10 N 1.31514 * 120.00035 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 119.99853 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47093 * 60.00328 * 11 9 7 13 13 H 1.48495 * 109.47002 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47239 * 300.00048 * 11 9 7 15 15 C 1.51445 * 110.78449 * 56.59672 * 5 4 2 16 16 H 1.08996 * 109.66536 * 187.50752 * 15 5 4 17 17 C 1.54117 * 111.89987 * 65.97065 * 15 5 4 18 18 C 1.54541 * 103.62820 * 199.51581 * 17 15 5 19 19 C 1.53973 * 106.59566 * 23.11085 * 18 17 15 20 20 C 1.54043 * 112.64567 * 309.94224 * 15 5 4 21 21 H 1.08997 * 112.46321 * 281.29282 * 20 15 5 22 22 O 1.42492 * 109.63726 * 239.48545 * 2 1 3 23 23 H 1.09008 * 109.47064 * 299.47382 * 1 2 3 24 24 H 1.09001 * 109.47320 * 59.47342 * 1 2 3 25 25 H 1.08996 * 109.47207 * 179.47617 * 1 2 3 26 26 H 1.08999 * 109.46939 * 180.51897 * 3 2 1 27 27 H 1.08997 * 109.47316 * 300.52274 * 3 2 1 28 28 H 1.08998 * 109.47291 * 60.52438 * 3 2 1 29 29 H 1.09004 * 109.75621 * 298.81206 * 4 2 1 30 30 H 1.09008 * 109.79284 * 178.09061 * 4 2 1 31 31 H 0.97000 * 119.99706 * 179.97438 * 10 9 7 32 32 H 1.09000 * 110.59272 * 80.98124 * 17 15 5 33 33 H 1.08999 * 110.72425 * 318.11722 * 17 15 5 34 34 H 1.08995 * 110.03601 * 263.82651 * 18 17 15 35 35 H 1.09008 * 110.03162 * 142.39095 * 18 17 15 36 36 H 1.08999 * 110.07140 * 242.11805 * 19 18 17 37 37 H 1.08998 * 110.12501 * 120.59890 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0484 1.4395 0.0000 4 6 2.0455 -0.7337 1.2443 5 6 1.4870 -2.1583 1.2188 6 1 0.4004 -2.1190 1.2941 7 6 2.0379 -2.9281 2.3914 8 1 2.6274 -3.8175 2.2246 9 6 1.7940 -2.4936 3.6771 10 7 1.0803 -1.4078 3.8800 11 14 2.4763 -3.4482 5.1307 12 1 3.9579 -3.4928 5.0421 13 1 2.0754 -2.7791 6.3943 14 1 1.9372 -4.8318 5.1112 15 6 1.8716 -2.8633 -0.0652 16 1 1.3574 -3.8225 -0.1252 17 6 3.3926 -3.0922 -0.1620 18 6 3.6300 -3.3282 -1.6707 19 6 2.4506 -2.6698 -2.4098 20 6 1.5553 -2.0263 -1.3191 21 1 0.5000 -2.0633 -1.5893 22 8 2.0089 -0.6814 -1.1562 23 1 -0.3633 0.5057 0.8947 24 1 -0.3634 0.5220 -0.8852 25 1 -0.3633 -1.0276 -0.0094 26 1 3.1384 1.4331 -0.0093 27 1 1.6805 1.9582 -0.8852 28 1 1.6958 1.9527 0.8946 29 1 1.7037 -0.2200 2.1429 30 1 3.1350 -0.7647 1.2296 31 1 0.9085 -1.1024 4.7845 32 1 3.6857 -3.9698 0.4141 33 1 3.9376 -2.2118 0.1788 34 1 3.6533 -4.3971 -1.8824 35 1 4.5681 -2.8657 -1.9780 36 1 1.8867 -3.4229 -2.9602 37 1 2.8168 -1.9036 -3.0931 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259783627.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:07 Heat of formation + Delta-G solvation = -70.079904 kcal Electronic energy + Delta-G solvation = -16985.035645 eV Core-core repulsion = 14533.164936 eV Total energy + Delta-G solvation = -2451.870710 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.67828 -35.66000 -34.03238 -31.82551 -30.29878 -27.56459 -26.48460 -26.08248 -25.01222 -21.51451 -20.29221 -19.71083 -17.27056 -16.05908 -15.64551 -15.03609 -14.85482 -14.00230 -13.93386 -13.70690 -12.91914 -12.42341 -12.13404 -11.85585 -11.55364 -11.37468 -11.15692 -11.04922 -10.86885 -10.81410 -10.57636 -10.57180 -10.17211 -10.04801 -9.93489 -9.77992 -9.35449 -9.04548 -8.90300 -8.27445 -8.06189 -5.95577 -4.00731 3.32516 3.37283 3.40066 4.43370 4.46399 5.29653 5.32056 5.33664 5.51387 5.70005 5.74840 5.92411 5.97855 6.16191 6.20312 6.23501 6.26947 6.30806 6.37080 6.42093 6.48236 6.55833 6.67474 6.74541 6.78913 6.89407 6.99279 7.00091 7.11237 7.31311 7.52763 7.75042 8.02060 8.07429 8.33482 8.48724 9.01742 9.63065 11.09731 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.027255 B = 0.011635 C = 0.009077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.093677 B = 2406.032053 C = 3083.898917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.105 3.895 3 C -0.130 4.130 4 C -0.122 4.122 5 C 0.053 3.947 6 H 0.028 0.972 7 C -0.507 4.507 8 H 0.055 0.945 9 C 0.061 3.939 10 N -0.891 5.891 11 Si 0.887 3.113 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.279 1.279 15 C -0.103 4.103 16 H 0.059 0.941 17 C -0.098 4.098 18 C -0.125 4.125 19 C -0.118 4.118 20 C 0.091 3.909 21 H 0.056 0.944 22 O -0.383 6.383 23 H 0.063 0.937 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.044 0.956 31 H 0.259 0.741 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.064 1.036 -8.375 8.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.067 3.933 3 C -0.187 4.187 4 C -0.160 4.160 5 C 0.034 3.966 6 H 0.046 0.954 7 C -0.545 4.545 8 H 0.073 0.927 9 C -0.140 4.140 10 N -0.530 5.530 11 Si 0.716 3.284 12 H -0.204 1.204 13 H -0.214 1.214 14 H -0.204 1.204 15 C -0.122 4.122 16 H 0.077 0.923 17 C -0.136 4.136 18 C -0.162 4.162 19 C -0.155 4.155 20 C 0.034 3.966 21 H 0.074 0.926 22 O -0.303 6.303 23 H 0.082 0.918 24 H 0.061 0.939 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.120 1.229 -8.354 8.518 hybrid contribution 0.147 -0.668 1.077 1.276 sum 1.267 0.562 -7.277 7.408 Atomic orbital electron populations 1.22334 0.96793 1.02391 1.00889 1.21666 0.92460 0.91857 0.87353 1.21685 1.01227 0.94724 1.01087 1.22230 0.99014 0.98574 0.96213 1.18324 0.96398 0.91633 0.90212 0.95392 1.21185 1.32644 1.10202 0.90491 0.92670 1.24951 0.95205 0.95063 0.98734 1.69863 1.39349 1.22814 1.20981 0.86735 0.79449 0.80165 0.82092 1.20385 1.21420 1.20436 1.22032 0.95953 0.98329 0.95885 0.92288 1.22106 0.96904 1.01435 0.93113 1.22223 0.97591 0.99104 0.97323 1.22370 0.96845 0.98806 0.97490 1.22897 0.95660 0.82622 0.95461 0.92646 1.87604 1.72439 1.25239 1.45038 0.91809 0.93945 0.91931 0.92601 0.93347 0.91583 0.88558 0.93774 0.93110 0.92260 0.91411 0.92874 0.92740 0.91835 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 7.90 37.16 0.29 -2.86 16 2 C 0.11 2.11 1.12 -90.43 -0.10 2.00 16 3 C -0.13 -2.26 8.88 37.16 0.33 -1.93 16 4 C -0.12 -2.86 3.83 -26.52 -0.10 -2.96 16 5 C 0.05 1.28 1.55 -92.54 -0.14 1.14 16 6 H 0.03 0.74 6.47 -51.93 -0.34 0.41 16 7 C -0.51 -13.59 7.97 -34.44 -0.27 -13.86 16 8 H 0.06 1.47 6.70 -52.48 -0.35 1.12 16 9 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 10 N -0.89 -24.90 11.35 55.43 0.63 -24.27 16 11 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C -0.10 -2.16 2.41 -90.28 -0.22 -2.38 16 16 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 17 C -0.10 -1.93 5.27 -25.34 -0.13 -2.07 16 18 C -0.12 -2.03 6.81 -25.41 -0.17 -2.20 16 19 C -0.12 -1.88 6.45 -25.12 -0.16 -2.04 16 20 C 0.09 1.71 3.07 -25.09 -0.08 1.64 16 21 H 0.06 1.01 7.28 -51.93 -0.38 0.63 16 22 O -0.38 -7.68 9.43 -35.23 -0.33 -8.01 16 23 H 0.06 1.22 8.14 -51.92 -0.42 0.79 16 24 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.06 1.24 5.21 -51.93 -0.27 0.97 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.10 2.49 6.17 -51.93 -0.32 2.17 16 30 H 0.04 1.07 6.76 -51.92 -0.35 0.72 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.06 1.18 7.36 -51.93 -0.38 0.80 16 33 H 0.07 1.45 6.54 -51.93 -0.34 1.11 16 34 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 36 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.07 1.04 8.01 -51.93 -0.42 0.62 16 LS Contribution 274.30 15.07 4.13 4.13 Total: -1.00 -27.46 274.30 -7.53 -34.99 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.09 Total: 0.95 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: -0.85 Total: -23.95 kcal Atomic # 7 Polarization: -24.90 SS G_CDS: 0.63 Total: -24.27 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.33 Total: -8.01 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -27.46 -7.53 -34.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259783627.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.091 kcal (2) G-P(sol) polarization free energy of solvation -27.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds