Wall clock time and date at job start Mon Mar 30 2020 03:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.80605 * 2 1 4 4 C 1.53374 * 109.63997 * 120.52353 * 2 1 3 5 5 C 1.53043 * 108.00481 * 58.44039 * 4 2 1 6 6 H 1.08997 * 109.21335 * 296.30781 * 5 4 2 7 7 C 1.50695 * 109.21573 * 176.93174 * 5 4 2 8 8 H 1.08004 * 120.00546 * 240.27893 * 7 5 4 9 9 C 1.37885 * 119.99721 * 60.00144 * 7 5 4 10 10 N 1.31514 * 120.00035 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 119.99853 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47093 * 60.00328 * 11 9 7 13 13 H 1.48495 * 109.47002 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47239 * 300.00048 * 11 9 7 15 15 C 1.51445 * 110.78449 * 56.59672 * 5 4 2 16 16 H 1.08996 * 109.66536 * 187.50752 * 15 5 4 17 17 C 1.54117 * 111.89987 * 65.97065 * 15 5 4 18 18 C 1.54541 * 103.62820 * 199.51581 * 17 15 5 19 19 C 1.53973 * 106.59566 * 23.11085 * 18 17 15 20 20 C 1.54043 * 112.64567 * 309.94224 * 15 5 4 21 21 H 1.08997 * 112.46321 * 281.29282 * 20 15 5 22 22 O 1.42492 * 109.63726 * 239.48545 * 2 1 3 23 23 H 1.09008 * 109.47064 * 299.47382 * 1 2 3 24 24 H 1.09001 * 109.47320 * 59.47342 * 1 2 3 25 25 H 1.08996 * 109.47207 * 179.47617 * 1 2 3 26 26 H 1.08999 * 109.46939 * 180.51897 * 3 2 1 27 27 H 1.08997 * 109.47316 * 300.52274 * 3 2 1 28 28 H 1.08998 * 109.47291 * 60.52438 * 3 2 1 29 29 H 1.09004 * 109.75621 * 298.81206 * 4 2 1 30 30 H 1.09008 * 109.79284 * 178.09061 * 4 2 1 31 31 H 0.97000 * 119.99706 * 179.97438 * 10 9 7 32 32 H 1.09000 * 110.59272 * 80.98124 * 17 15 5 33 33 H 1.08999 * 110.72425 * 318.11722 * 17 15 5 34 34 H 1.08995 * 110.03601 * 263.82651 * 18 17 15 35 35 H 1.09008 * 110.03162 * 142.39095 * 18 17 15 36 36 H 1.08999 * 110.07140 * 242.11805 * 19 18 17 37 37 H 1.08998 * 110.12501 * 120.59890 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0484 1.4395 0.0000 4 6 2.0455 -0.7337 1.2443 5 6 1.4870 -2.1583 1.2188 6 1 0.4004 -2.1190 1.2941 7 6 2.0379 -2.9281 2.3914 8 1 2.6274 -3.8175 2.2246 9 6 1.7940 -2.4936 3.6771 10 7 1.0803 -1.4078 3.8800 11 14 2.4763 -3.4482 5.1307 12 1 3.9579 -3.4928 5.0421 13 1 2.0754 -2.7791 6.3943 14 1 1.9372 -4.8318 5.1112 15 6 1.8716 -2.8633 -0.0652 16 1 1.3574 -3.8225 -0.1252 17 6 3.3926 -3.0922 -0.1620 18 6 3.6300 -3.3282 -1.6707 19 6 2.4506 -2.6698 -2.4098 20 6 1.5553 -2.0263 -1.3191 21 1 0.5000 -2.0633 -1.5893 22 8 2.0089 -0.6814 -1.1562 23 1 -0.3633 0.5057 0.8947 24 1 -0.3634 0.5220 -0.8852 25 1 -0.3633 -1.0276 -0.0094 26 1 3.1384 1.4331 -0.0093 27 1 1.6805 1.9582 -0.8852 28 1 1.6958 1.9527 0.8946 29 1 1.7037 -0.2200 2.1429 30 1 3.1350 -0.7647 1.2296 31 1 0.9085 -1.1024 4.7845 32 1 3.6857 -3.9698 0.4141 33 1 3.9376 -2.2118 0.1788 34 1 3.6533 -4.3971 -1.8824 35 1 4.5681 -2.8657 -1.9780 36 1 1.8867 -3.4229 -2.9602 37 1 2.8168 -1.9036 -3.0931 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259783627.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:06 Heat of formation + Delta-G solvation = -84.657808 kcal Electronic energy + Delta-G solvation = -16985.667791 eV Core-core repulsion = 14533.164936 eV Total energy + Delta-G solvation = -2452.502855 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.28996 -37.16290 -35.90670 -33.62055 -31.98118 -29.06195 -28.05349 -27.62948 -27.00378 -23.29642 -21.90736 -21.13235 -18.95808 -18.05310 -17.23507 -16.76097 -16.60296 -15.71256 -15.52289 -15.21988 -14.50961 -14.22951 -13.71718 -13.36797 -13.13126 -12.94687 -12.87450 -12.70555 -12.64613 -12.37478 -12.29396 -12.22702 -11.81332 -11.70672 -11.62033 -11.31867 -11.06474 -10.87585 -10.69626 -10.25863 -9.83623 -8.04301 -6.16291 1.40301 1.40711 1.47915 2.43806 2.94453 3.21283 3.86950 3.87745 4.11753 4.17557 4.21976 4.36888 4.50439 4.62972 4.76866 4.79555 4.84983 4.89165 4.95039 4.95632 4.99418 5.08513 5.15665 5.19818 5.23128 5.32090 5.33528 5.40079 5.48052 5.59728 5.64181 5.76844 6.04220 6.14628 6.43303 6.72059 6.93349 7.49963 8.98782 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.027255 B = 0.011635 C = 0.009077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.093677 B = 2406.032053 C = 3083.898917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.105 3.895 3 C -0.126 4.126 4 C -0.111 4.111 5 C 0.052 3.948 6 H -0.001 1.001 7 C -0.524 4.524 8 H 0.051 0.949 9 C 0.014 3.986 10 N -0.914 5.914 11 Si 0.945 3.055 12 H -0.275 1.275 13 H -0.285 1.285 14 H -0.274 1.274 15 C -0.107 4.107 16 H 0.056 0.944 17 C -0.097 4.097 18 C -0.117 4.117 19 C -0.110 4.110 20 C 0.086 3.914 21 H 0.064 0.936 22 O -0.385 6.385 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.258 0.742 32 H 0.049 0.951 33 H 0.044 0.956 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.453 0.792 -10.017 10.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.066 3.934 3 C -0.183 4.183 4 C -0.149 4.149 5 C 0.034 3.966 6 H 0.017 0.983 7 C -0.562 4.562 8 H 0.069 0.931 9 C -0.184 4.184 10 N -0.554 5.554 11 Si 0.771 3.229 12 H -0.200 1.200 13 H -0.211 1.211 14 H -0.199 1.199 15 C -0.126 4.126 16 H 0.075 0.925 17 C -0.135 4.135 18 C -0.155 4.155 19 C -0.147 4.147 20 C 0.029 3.971 21 H 0.082 0.918 22 O -0.305 6.305 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.513 0.978 -10.006 10.166 hybrid contribution 0.007 -0.615 1.621 1.734 sum 1.520 0.364 -8.384 8.529 Atomic orbital electron populations 1.22251 0.95970 1.01733 1.01775 1.21649 0.93119 0.92886 0.85763 1.21659 1.01192 0.93028 1.02433 1.21998 0.97555 0.98340 0.97055 1.18256 0.94383 0.92469 0.91487 0.98330 1.21537 1.32538 1.10331 0.91795 0.93126 1.25654 0.95647 0.95963 1.01168 1.69996 1.40235 1.23879 1.21274 0.85816 0.78842 0.79042 0.79158 1.20024 1.21103 1.19903 1.21983 0.96913 0.98290 0.95403 0.92523 1.22025 0.95557 0.99901 0.96012 1.22183 0.98393 1.00756 0.94134 1.22379 0.96245 0.99502 0.96593 1.23047 0.97003 0.81868 0.95192 0.91803 1.87615 1.72683 1.25803 1.44413 0.92633 0.91189 0.93424 0.92684 0.90941 0.91263 0.91473 0.95649 0.93259 0.93237 0.93767 0.90735 0.91581 0.89091 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.95 7.90 71.98 0.57 -5.38 16 2 C 0.10 4.13 1.12 -10.67 -0.01 4.12 16 3 C -0.13 -4.20 8.88 71.98 0.64 -3.56 16 4 C -0.11 -5.34 3.83 30.73 0.12 -5.22 16 5 C 0.05 2.62 1.55 -12.04 -0.02 2.60 16 6 H 0.00 -0.07 6.47 -2.39 -0.02 -0.09 16 7 C -0.52 -28.83 7.97 25.60 0.20 -28.63 16 8 H 0.05 2.76 6.70 -2.91 -0.02 2.74 16 9 C 0.01 0.78 5.30 84.66 0.45 1.23 16 10 N -0.91 -52.52 11.35 21.45 0.24 -52.28 16 11 Si 0.94 44.07 29.54 68.60 2.03 46.10 16 12 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 13 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 14 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 15 C -0.11 -4.47 2.41 -10.57 -0.03 -4.50 16 16 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 17 C -0.10 -3.79 5.27 31.50 0.17 -3.63 16 18 C -0.12 -3.48 6.81 31.45 0.21 -3.26 16 19 C -0.11 -3.13 6.45 31.64 0.20 -2.93 16 20 C 0.09 3.09 3.07 31.66 0.10 3.19 16 21 H 0.06 2.19 7.28 -2.39 -0.02 2.17 16 22 O -0.38 -14.79 9.43 -148.98 -1.40 -16.20 16 23 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 24 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 25 H 0.05 1.89 5.21 -2.39 -0.01 1.88 16 26 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 29 H 0.07 3.61 6.17 -2.38 -0.01 3.59 16 30 H 0.02 1.27 6.76 -2.38 -0.02 1.25 16 31 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.05 1.97 7.36 -2.39 -0.02 1.95 16 33 H 0.04 1.90 6.54 -2.39 -0.02 1.89 16 34 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.08 2.08 8.01 -2.39 -0.02 2.06 16 Total: -1.00 -59.46 274.30 4.50 -54.96 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 1.03 Total: 13.40 kcal Atomic # 6 Polarization: -48.58 SS G_CDS: 2.60 Total: -45.98 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.24 Total: -52.28 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -1.40 Total: -16.20 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -59.46 4.50 -54.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259783627.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.697 kcal (2) G-P(sol) polarization free energy of solvation -59.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds