Wall clock time and date at job start Mon Mar 30 2020 03:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46721 * 2 1 4 4 C 1.52996 * 109.47630 * 119.99886 * 2 1 3 5 5 C 1.53005 * 115.54868 * 64.72575 * 4 2 1 6 6 H 1.08994 * 110.27214 * 157.88938 * 5 4 2 7 7 C 1.54948 * 110.30646 * 35.69356 * 5 4 2 8 8 C 1.55305 * 100.93962 * 204.63835 * 7 5 4 9 9 C 1.54384 * 102.25455 * 34.13710 * 8 7 5 10 10 H 1.09003 * 109.90834 * 98.19728 * 9 8 7 11 11 C 1.50693 * 109.82840 * 219.12746 * 9 8 7 12 12 H 1.08000 * 120.00234 * 359.58637 * 11 9 8 13 13 C 1.37885 * 119.99984 * 179.58403 * 11 9 8 14 14 N 1.31514 * 119.99937 * 180.02562 * 13 11 9 15 15 Si 1.86793 * 119.99704 * 0.02562 * 13 11 9 16 16 H 1.48505 * 109.47327 * 90.00144 * 15 13 11 17 17 H 1.48503 * 109.47368 * 330.00104 * 15 13 11 18 18 H 1.48502 * 109.47208 * 209.99774 * 15 13 11 19 19 O 1.43240 * 107.58618 * 338.64304 * 9 8 7 20 20 C 1.52994 * 117.52063 * 210.42997 * 4 2 1 21 21 C 1.53000 * 117.50152 * 279.06337 * 4 2 1 22 22 H 1.09001 * 109.46788 * 299.99365 * 1 2 3 23 23 H 1.08995 * 109.47337 * 60.00018 * 1 2 3 24 24 H 1.08998 * 109.46781 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47301 * 240.00511 * 2 1 3 26 26 H 1.08999 * 109.46545 * 184.37075 * 3 2 1 27 27 H 1.08997 * 109.46974 * 304.36760 * 3 2 1 28 28 H 1.09002 * 109.47016 * 64.37007 * 3 2 1 29 29 H 1.09004 * 111.12391 * 322.55837 * 7 5 4 30 30 H 1.09000 * 111.12290 * 86.67588 * 7 5 4 31 31 H 1.08994 * 110.84996 * 275.93806 * 8 7 5 32 32 H 1.09008 * 110.84279 * 152.32555 * 8 7 5 33 33 H 0.96999 * 119.99598 * 180.02562 * 14 13 11 34 34 H 1.09007 * 117.49931 * 214.96897 * 20 4 2 35 35 H 1.09000 * 117.50139 * 359.97438 * 20 4 2 36 36 H 1.09007 * 117.49527 * 359.97203 * 21 4 2 37 37 H 1.08999 * 117.50128 * 144.99160 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0402 -0.7212 1.2492 5 6 1.7045 -2.2116 1.3340 6 1 2.3991 -2.7175 2.0044 7 6 1.7495 -2.8539 -0.0753 8 6 0.8029 -4.0689 0.1242 9 6 -0.2404 -3.5119 1.1167 10 1 -1.1310 -3.1899 0.5771 11 6 -0.6075 -4.5732 2.1215 12 1 -0.1544 -5.5518 2.0633 13 6 -1.5219 -4.2949 3.1153 14 7 -1.8419 -5.2210 3.9925 15 14 -2.3061 -2.6025 3.2155 16 1 -3.5521 -2.5856 2.4077 17 1 -1.3602 -1.5866 2.6877 18 1 -2.6295 -2.2898 4.6307 19 8 0.3532 -2.3933 1.7861 20 6 3.3788 -0.2642 1.8322 21 6 2.0742 0.0708 2.5578 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1271 1.4436 -0.0783 27 1 1.6141 1.9785 -0.8483 28 1 1.7419 1.9333 0.9266 29 1 1.3593 -2.1717 -0.8306 30 1 2.7591 -3.1788 -0.3269 31 1 1.3400 -4.9120 0.5585 32 1 0.3308 -4.3515 -0.8168 33 1 -2.4855 -5.0252 4.6914 34 1 4.0205 -1.0254 2.2762 35 1 3.8967 0.5501 1.3255 36 1 1.7335 1.1058 2.5287 37 1 1.8575 -0.4699 3.4791 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687555333.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:25 Heat of formation + Delta-G solvation = -29.072424 kcal Electronic energy + Delta-G solvation = -16672.717381 eV Core-core repulsion = 14222.624889 eV Total energy + Delta-G solvation = -2450.092492 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.57227 -37.09750 -32.72887 -32.42561 -31.05389 -29.14197 -26.83411 -24.94780 -22.45650 -22.15292 -21.34275 -19.96600 -17.93140 -16.66591 -16.08725 -15.80456 -14.72890 -14.13700 -14.04655 -13.56654 -12.77250 -12.62904 -12.46428 -12.33953 -12.18987 -11.84958 -11.46820 -11.30650 -11.00022 -10.82180 -10.75129 -10.56424 -10.46293 -10.23314 -9.80373 -9.75229 -9.54762 -9.37358 -9.09291 -8.48053 -8.02416 -6.03596 -4.11076 3.43588 3.48811 3.76864 4.02938 4.60960 4.83321 4.91444 5.04252 5.16823 5.22846 5.37362 5.46875 5.52832 5.57893 5.74000 5.83152 5.91482 5.93728 6.01623 6.04000 6.14195 6.23745 6.25489 6.30571 6.37005 6.46088 6.47967 6.55033 6.62689 6.72582 6.80257 6.83416 7.35512 7.72018 8.36652 8.53755 8.98231 9.62345 11.07387 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.031343 B = 0.010340 C = 0.009504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.136604 B = 2707.239175 C = 2945.354976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.152 4.152 4 C -0.111 4.111 5 C 0.115 3.885 6 H 0.056 0.944 7 C -0.155 4.155 8 C -0.135 4.135 9 C 0.170 3.830 10 H 0.034 0.966 11 C -0.533 4.533 12 H 0.073 0.927 13 C 0.083 3.917 14 N -0.897 5.897 15 Si 0.867 3.133 16 H -0.287 1.287 17 H -0.216 1.216 18 H -0.294 1.294 19 O -0.367 6.367 20 C -0.180 4.180 21 C -0.165 4.165 22 H 0.053 0.947 23 H 0.042 0.958 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.263 0.737 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.136 11.436 -7.886 16.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.074 4.074 3 C -0.209 4.209 4 C -0.111 4.111 5 C 0.057 3.943 6 H 0.074 0.926 7 C -0.193 4.193 8 C -0.173 4.173 9 C 0.114 3.886 10 H 0.052 0.948 11 C -0.570 4.570 12 H 0.091 0.909 13 C -0.121 4.121 14 N -0.535 5.535 15 Si 0.694 3.306 16 H -0.214 1.214 17 H -0.139 1.139 18 H -0.221 1.221 19 O -0.288 6.288 20 C -0.217 4.217 21 C -0.202 4.202 22 H 0.072 0.928 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.932 11.520 -7.589 15.912 hybrid contribution -0.395 0.492 0.175 0.655 sum 7.537 12.012 -7.414 16.002 Atomic orbital electron populations 1.21820 0.94518 1.03303 1.00464 1.20585 0.96217 0.94479 0.96125 1.22018 1.00582 0.96662 1.01616 1.21617 0.99489 0.95380 0.94610 1.22135 0.88344 0.90284 0.93526 0.92599 1.23368 0.99751 0.98145 0.98011 1.23024 0.97371 0.97498 0.99400 1.20640 0.91439 0.85035 0.91444 0.94818 1.21336 1.24715 0.97923 1.13045 0.90924 1.25026 0.95483 0.97032 0.94513 1.69948 1.33318 1.34031 1.16227 0.87010 0.79709 0.86879 0.77037 1.21367 1.13898 1.22060 1.88840 1.22874 1.51407 1.65688 1.23100 0.90744 1.03317 1.04563 1.22905 1.00323 1.00412 0.96562 0.92826 0.93894 0.91049 0.90902 0.92798 0.93010 0.92485 0.90741 0.91750 0.91197 0.92107 0.92748 0.89223 0.88852 0.89180 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.59 37.16 0.32 -1.91 16 2 C -0.06 -0.78 2.29 -90.62 -0.21 -0.99 16 3 C -0.15 -1.75 8.20 37.16 0.30 -1.45 16 4 C -0.11 -1.74 1.62 -154.51 -0.25 -1.99 16 5 C 0.12 2.17 3.24 -25.70 -0.08 2.09 16 6 H 0.06 1.11 7.98 -51.93 -0.41 0.69 16 7 C -0.16 -2.61 5.97 -24.48 -0.15 -2.75 16 8 C -0.14 -2.67 6.53 -24.78 -0.16 -2.84 16 9 C 0.17 4.06 2.37 -27.16 -0.06 4.00 16 10 H 0.03 0.82 7.48 -51.93 -0.39 0.43 16 11 C -0.53 -15.35 9.33 -34.44 -0.32 -15.67 16 12 H 0.07 2.24 7.77 -52.49 -0.41 1.84 16 13 C 0.08 2.47 5.47 -17.82 -0.10 2.37 16 14 N -0.90 -28.16 13.96 55.43 0.77 -27.38 16 15 Si 0.87 22.31 27.01 -169.99 -4.59 17.72 16 16 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 17 H -0.22 -5.37 5.38 56.52 0.30 -5.06 16 18 H -0.29 -7.64 7.11 56.52 0.40 -7.23 16 19 O -0.37 -8.47 6.26 -35.23 -0.22 -8.69 16 20 C -0.18 -2.42 9.47 -26.73 -0.25 -2.67 16 21 C -0.17 -2.53 9.57 -26.73 -0.26 -2.78 16 22 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.07 1.28 5.58 -51.93 -0.29 0.99 16 25 H 0.07 0.98 6.34 -51.93 -0.33 0.65 16 26 H 0.05 0.56 6.58 -51.93 -0.34 0.22 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.67 6.15 -51.93 -0.32 0.35 16 29 H 0.07 1.16 5.15 -51.93 -0.27 0.89 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.44 7.66 -51.93 -0.40 1.04 16 32 H 0.06 1.09 8.14 -51.92 -0.42 0.67 16 33 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 34 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 35 H 0.09 1.08 6.20 -51.93 -0.32 0.75 16 36 H 0.09 1.25 6.34 -51.92 -0.33 0.93 16 37 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 LS Contribution 277.95 15.07 4.19 4.19 Total: -1.00 -30.82 277.95 -7.06 -37.88 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.00 Total: 0.87 kcal Atomic # 6 Polarization: -23.37 SS G_CDS: -1.22 Total: -24.59 kcal Atomic # 7 Polarization: -28.16 SS G_CDS: 0.77 Total: -27.38 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.22 Total: -8.69 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.59 Total: 17.72 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.82 -7.06 -37.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687555333.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.808 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds