Wall clock time and date at job start Mon Mar 30 2020 03:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53009 * 109.46721 * 2 1 4 4 C 1.52996 * 109.47630 * 119.99886 * 2 1 3 5 5 C 1.53005 * 115.54868 * 64.72575 * 4 2 1 6 6 H 1.08994 * 110.27214 * 157.88938 * 5 4 2 7 7 C 1.54948 * 110.30646 * 35.69356 * 5 4 2 8 8 C 1.55305 * 100.93962 * 204.63835 * 7 5 4 9 9 C 1.54384 * 102.25455 * 34.13710 * 8 7 5 10 10 H 1.09003 * 109.90834 * 98.19728 * 9 8 7 11 11 C 1.50693 * 109.82840 * 219.12746 * 9 8 7 12 12 H 1.08000 * 120.00234 * 359.58637 * 11 9 8 13 13 C 1.37885 * 119.99984 * 179.58403 * 11 9 8 14 14 N 1.31514 * 119.99937 * 180.02562 * 13 11 9 15 15 Si 1.86793 * 119.99704 * 0.02562 * 13 11 9 16 16 H 1.48505 * 109.47327 * 90.00144 * 15 13 11 17 17 H 1.48503 * 109.47368 * 330.00104 * 15 13 11 18 18 H 1.48502 * 109.47208 * 209.99774 * 15 13 11 19 19 O 1.43240 * 107.58618 * 338.64304 * 9 8 7 20 20 C 1.52994 * 117.52063 * 210.42997 * 4 2 1 21 21 C 1.53000 * 117.50152 * 279.06337 * 4 2 1 22 22 H 1.09001 * 109.46788 * 299.99365 * 1 2 3 23 23 H 1.08995 * 109.47337 * 60.00018 * 1 2 3 24 24 H 1.08998 * 109.46781 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47301 * 240.00511 * 2 1 3 26 26 H 1.08999 * 109.46545 * 184.37075 * 3 2 1 27 27 H 1.08997 * 109.46974 * 304.36760 * 3 2 1 28 28 H 1.09002 * 109.47016 * 64.37007 * 3 2 1 29 29 H 1.09004 * 111.12391 * 322.55837 * 7 5 4 30 30 H 1.09000 * 111.12290 * 86.67588 * 7 5 4 31 31 H 1.08994 * 110.84996 * 275.93806 * 8 7 5 32 32 H 1.09008 * 110.84279 * 152.32555 * 8 7 5 33 33 H 0.96999 * 119.99598 * 180.02562 * 14 13 11 34 34 H 1.09007 * 117.49931 * 214.96897 * 20 4 2 35 35 H 1.09000 * 117.50139 * 359.97438 * 20 4 2 36 36 H 1.09007 * 117.49527 * 359.97203 * 21 4 2 37 37 H 1.08999 * 117.50128 * 144.99160 * 21 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0402 -0.7212 1.2492 5 6 1.7045 -2.2116 1.3340 6 1 2.3991 -2.7175 2.0044 7 6 1.7495 -2.8539 -0.0753 8 6 0.8029 -4.0689 0.1242 9 6 -0.2404 -3.5119 1.1167 10 1 -1.1310 -3.1899 0.5771 11 6 -0.6075 -4.5732 2.1215 12 1 -0.1544 -5.5518 2.0633 13 6 -1.5219 -4.2949 3.1153 14 7 -1.8419 -5.2210 3.9925 15 14 -2.3061 -2.6025 3.2155 16 1 -3.5521 -2.5856 2.4077 17 1 -1.3602 -1.5866 2.6877 18 1 -2.6295 -2.2898 4.6307 19 8 0.3532 -2.3933 1.7861 20 6 3.3788 -0.2642 1.8322 21 6 2.0742 0.0708 2.5578 22 1 -0.3633 0.5137 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1271 1.4436 -0.0783 27 1 1.6141 1.9785 -0.8483 28 1 1.7419 1.9333 0.9266 29 1 1.3593 -2.1717 -0.8306 30 1 2.7591 -3.1788 -0.3269 31 1 1.3400 -4.9120 0.5585 32 1 0.3308 -4.3515 -0.8168 33 1 -2.4855 -5.0252 4.6914 34 1 4.0205 -1.0254 2.2762 35 1 3.8967 0.5501 1.3255 36 1 1.7335 1.1058 2.5287 37 1 1.8575 -0.4699 3.4791 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687555333.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:25 Heat of formation + Delta-G solvation = -47.348494 kcal Electronic energy + Delta-G solvation = -16673.509891 eV Core-core repulsion = 14222.624889 eV Total energy + Delta-G solvation = -2450.885002 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.95081 -38.56816 -34.66917 -33.81099 -32.65776 -30.92409 -27.94801 -26.73481 -23.83822 -23.32086 -22.71596 -21.74942 -19.33087 -18.67415 -17.43957 -17.34382 -16.49631 -15.61509 -15.32831 -15.04143 -14.70599 -14.23593 -13.90667 -13.85076 -13.50353 -12.93059 -12.81802 -12.71881 -12.59510 -12.41301 -12.24066 -11.93926 -11.75300 -11.73320 -11.59342 -11.30407 -11.19365 -10.82035 -10.72841 -10.38757 -9.86173 -8.34384 -6.45552 1.35488 1.37994 1.70457 2.43586 2.75883 3.05508 3.56984 3.72470 3.86428 3.92188 4.10259 4.14488 4.30155 4.42326 4.49288 4.52358 4.68201 4.76714 4.78972 4.83897 4.92875 4.99322 5.00190 5.11196 5.13612 5.16191 5.22006 5.30522 5.34471 5.44648 5.57426 5.58616 5.59706 5.66555 6.17557 6.55716 6.79395 7.32472 8.80322 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.031343 B = 0.010340 C = 0.009504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.136604 B = 2707.239175 C = 2945.354976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.053 4.053 3 C -0.147 4.147 4 C -0.123 4.123 5 C 0.103 3.897 6 H 0.037 0.963 7 C -0.137 4.137 8 C -0.135 4.135 9 C 0.171 3.829 10 H 0.034 0.966 11 C -0.541 4.541 12 H 0.033 0.967 13 C 0.025 3.975 14 N -0.946 5.946 15 Si 0.934 3.066 16 H -0.278 1.278 17 H -0.204 1.204 18 H -0.297 1.297 19 O -0.385 6.385 20 C -0.153 4.153 21 C -0.179 4.179 22 H 0.038 0.962 23 H 0.064 0.936 24 H 0.043 0.957 25 H 0.085 0.915 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.265 0.735 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.105 0.895 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.459 14.261 -9.940 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.071 4.071 3 C -0.204 4.204 4 C -0.123 4.123 5 C 0.045 3.955 6 H 0.055 0.945 7 C -0.174 4.174 8 C -0.172 4.172 9 C 0.115 3.885 10 H 0.052 0.948 11 C -0.578 4.578 12 H 0.052 0.948 13 C -0.174 4.174 14 N -0.586 5.586 15 Si 0.758 3.242 16 H -0.204 1.204 17 H -0.126 1.126 18 H -0.224 1.224 19 O -0.306 6.306 20 C -0.189 4.189 21 C -0.216 4.216 22 H 0.057 0.943 23 H 0.083 0.917 24 H 0.062 0.938 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.107 0.893 35 H 0.141 0.859 36 H 0.124 0.876 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.272 14.346 -9.658 19.623 hybrid contribution -0.743 -0.475 0.830 1.211 sum 8.530 13.871 -8.829 18.523 Atomic orbital electron populations 1.21813 0.95901 1.01581 1.00847 1.20605 0.94993 0.96138 0.95354 1.21975 1.01613 0.94687 1.02104 1.21598 1.01722 0.93252 0.95746 1.22370 0.85756 0.93030 0.94317 0.94472 1.23313 1.00465 0.96519 0.97121 1.22964 0.97042 0.98200 0.99042 1.20457 0.92969 0.84293 0.90774 0.94803 1.21732 1.24063 0.98003 1.14011 0.94825 1.25922 0.96334 1.00855 0.94282 1.70083 1.34763 1.36277 1.17471 0.85981 0.79082 0.82394 0.76765 1.20390 1.12641 1.22427 1.88734 1.25173 1.50319 1.66371 1.23185 0.89630 1.03491 1.02632 1.22915 1.02466 1.00859 0.95390 0.94299 0.91683 0.93752 0.89725 0.91181 0.91615 0.92831 0.88708 0.89108 0.92902 0.90004 0.92650 0.89271 0.85898 0.87646 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 8.59 71.98 0.62 -3.43 16 2 C -0.05 -1.27 2.29 -10.79 -0.02 -1.29 16 3 C -0.15 -2.69 8.20 71.99 0.59 -2.10 16 4 C -0.12 -3.53 1.62 -52.18 -0.08 -3.61 16 5 C 0.10 3.73 3.24 31.26 0.10 3.84 16 6 H 0.04 1.47 7.98 -2.39 -0.02 1.45 16 7 C -0.14 -4.23 5.97 32.05 0.19 -4.04 16 8 C -0.13 -5.21 6.53 31.86 0.21 -5.01 16 9 C 0.17 8.20 2.37 30.32 0.07 8.27 16 10 H 0.03 1.63 7.48 -2.39 -0.02 1.61 16 11 C -0.54 -32.24 9.33 25.60 0.24 -32.00 16 12 H 0.03 2.20 7.77 -2.91 -0.02 2.17 16 13 C 0.02 1.50 5.47 84.66 0.46 1.97 16 14 N -0.95 -61.62 13.96 21.45 0.30 -61.33 16 15 Si 0.93 47.29 27.01 68.60 1.85 49.15 16 16 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 17 H -0.20 -9.85 5.38 99.48 0.54 -9.32 16 18 H -0.30 -15.09 7.11 99.48 0.71 -14.39 16 19 O -0.39 -17.61 6.26 -148.98 -0.93 -18.54 16 20 C -0.15 -3.57 9.47 30.59 0.29 -3.28 16 21 C -0.18 -5.14 9.57 30.59 0.29 -4.85 16 22 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.04 1.48 5.58 -2.39 -0.01 1.46 16 25 H 0.08 1.85 6.34 -2.39 -0.02 1.83 16 26 H 0.07 1.07 6.58 -2.39 -0.02 1.06 16 27 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.03 6.15 -2.39 -0.01 1.01 16 29 H 0.09 2.58 5.15 -2.38 -0.01 2.57 16 30 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 31 H 0.05 2.20 7.66 -2.39 -0.02 2.18 16 32 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 33 H 0.26 16.20 8.31 -92.71 -0.77 15.43 16 34 H 0.09 2.11 8.09 -2.38 -0.02 2.09 16 35 H 0.12 2.19 6.20 -2.39 -0.01 2.17 16 36 H 0.11 2.67 6.34 -2.38 -0.02 2.65 16 37 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -69.12 277.95 5.04 -64.08 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.86 Total: 12.18 kcal Atomic # 6 Polarization: -48.50 SS G_CDS: 2.96 Total: -45.54 kcal Atomic # 7 Polarization: -61.62 SS G_CDS: 0.30 Total: -61.33 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.93 Total: -18.54 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 1.85 Total: 49.15 kcal Total: -69.12 5.04 -64.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687555333.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.735 kcal (2) G-P(sol) polarization free energy of solvation -69.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds