Wall clock time and date at job start Mon Mar 30 2020 03:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.57771 * 34.73740 * 12 11 10 14 14 C 1.53139 * 109.57853 * 274.34056 * 12 11 10 15 15 N 1.46898 * 109.37325 * 240.20941 * 14 12 11 16 16 C 1.46948 * 111.05803 * 61.99079 * 15 14 12 17 17 C 1.53120 * 109.35262 * 298.03955 * 16 15 14 18 18 C 1.53384 * 109.57557 * 155.00311 * 12 11 10 19 19 C 1.53395 * 108.59902 * 179.55455 * 18 12 11 20 20 C 1.46944 * 111.05847 * 297.99416 * 15 14 12 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 26 26 H 1.00899 * 111.00283 * 303.95539 * 11 10 9 27 27 H 1.08999 * 109.49093 * 0.18417 * 14 12 11 28 28 H 1.09006 * 109.48570 * 120.23754 * 14 12 11 29 29 H 1.09000 * 109.49106 * 178.07152 * 16 15 14 30 30 H 1.09001 * 109.50626 * 58.01380 * 16 15 14 31 31 H 1.08999 * 109.57979 * 240.13598 * 17 16 15 32 32 H 1.09002 * 109.68299 * 119.81306 * 17 16 15 33 33 H 1.09004 * 110.11375 * 300.19074 * 18 12 11 34 34 H 1.08999 * 109.57463 * 60.80243 * 19 18 12 35 35 H 1.08994 * 109.57618 * 181.18335 * 19 18 12 36 36 H 1.08997 * 109.49435 * 181.91220 * 20 15 14 37 37 H 1.09002 * 109.49139 * 301.97174 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5108 -4.9342 0.0020 12 6 2.4354 -6.0759 0.0024 13 1 3.3211 -5.8284 0.5874 14 6 2.8431 -6.4065 -1.4362 15 7 2.4356 -7.7815 -1.7545 16 6 0.9761 -7.9318 -1.6733 17 6 0.5152 -7.6442 -0.2417 18 6 1.7409 -7.2994 0.6135 19 6 2.7208 -8.4793 0.5927 20 6 3.1133 -8.7488 -0.8802 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5564 0.8919 24 1 2.8714 -3.6047 -0.8890 25 1 2.8726 -3.6039 0.8910 26 1 0.8747 -4.9842 0.7836 27 1 2.3535 -5.7143 -2.1212 28 1 3.9246 -6.3149 -1.5378 29 1 0.6996 -8.9501 -1.9469 30 1 0.4993 -7.2294 -2.3570 31 1 0.0211 -8.5256 0.1669 32 1 -0.1786 -6.8035 -0.2413 33 1 1.4351 -7.0842 1.6375 34 1 3.6014 -8.2333 1.1862 35 1 2.2359 -9.3641 1.0049 36 1 2.8191 -9.7603 -1.1599 37 1 4.1927 -8.6412 -0.9866 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020070751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:39 Heat of formation + Delta-G solvation = -6.100931 kcal Electronic energy + Delta-G solvation = -15868.376851 eV Core-core repulsion = 13451.573228 eV Total energy + Delta-G solvation = -2416.803622 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.56644 -35.55053 -32.98779 -31.95857 -30.84336 -30.23088 -27.58745 -24.14402 -22.98083 -22.88861 -21.68976 -20.44778 -17.37132 -16.45731 -16.32631 -16.14687 -15.66108 -14.55523 -14.32514 -13.50961 -13.20632 -12.92743 -12.69146 -12.39176 -12.11032 -12.03130 -12.00578 -11.67571 -11.42528 -11.07774 -10.91055 -10.75749 -10.53673 -10.25359 -10.12102 -9.91912 -9.34211 -9.13190 -8.36930 -8.25130 -7.72180 -5.99459 -4.02041 3.32498 3.38496 3.41641 4.11595 4.41121 4.55183 4.63492 4.83578 5.04818 5.15390 5.24903 5.31023 5.36574 5.39032 5.46936 5.55927 5.67866 5.85968 5.87173 5.98185 6.01887 6.19167 6.23881 6.28519 6.35056 6.38781 6.46715 6.98748 7.15559 7.19948 7.51631 7.73409 7.83460 7.96323 8.08850 8.44122 9.05254 9.61818 11.11982 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.057356 B = 0.005264 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.065690 B = 5317.814106 C = 5423.560928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.066 3.934 11 N -0.681 5.681 12 C 0.058 3.942 13 H 0.039 0.961 14 C 0.062 3.938 15 N -0.530 5.530 16 C 0.058 3.942 17 C -0.141 4.141 18 C -0.093 4.093 19 C -0.147 4.147 20 C 0.052 3.948 21 H 0.260 0.740 22 H 0.025 0.975 23 H 0.012 0.988 24 H 0.058 0.942 25 H 0.013 0.987 26 H 0.334 0.666 27 H 0.091 0.909 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.769 -17.122 0.017 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.062 4.062 11 N -0.312 5.312 12 C -0.054 4.054 13 H 0.057 0.943 14 C -0.066 4.066 15 N -0.250 5.250 16 C -0.070 4.070 17 C -0.180 4.180 18 C -0.112 4.112 19 C -0.187 4.187 20 C -0.077 4.077 21 H 0.070 0.930 22 H 0.043 0.957 23 H 0.031 0.969 24 H 0.077 0.923 25 H 0.031 0.969 26 H 0.151 0.849 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.074 0.926 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.689 -17.103 -1.192 17.537 hybrid contribution 0.532 1.216 1.952 2.361 sum 4.221 -15.887 0.760 16.456 Atomic orbital electron populations 1.69970 1.06042 1.26583 1.50693 1.24998 0.94830 0.99205 0.95288 0.86591 0.79785 0.83459 0.78141 1.20593 1.21226 1.19948 1.21181 0.92970 0.91047 1.50847 0.92802 1.19058 0.93999 0.90457 0.97622 1.22198 0.96934 0.88539 0.98512 1.60788 1.19329 1.01739 1.49372 1.22226 0.94736 0.91012 0.97390 0.94269 1.22327 0.99983 0.89111 0.95223 1.62561 1.06818 1.04591 1.51027 1.22109 0.87638 1.01386 0.95865 1.22111 0.97598 1.01732 0.96599 1.21322 0.95851 0.94895 0.99144 1.22550 0.99393 0.98137 0.98631 1.22482 0.99059 0.96269 0.89910 0.92998 0.95670 0.96947 0.92340 0.96856 0.84852 0.89028 0.91404 0.91475 0.90290 0.92586 0.90259 0.91039 0.91751 0.91835 0.90943 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.68 5.23 -27.88 -0.15 0.54 16 10 C 0.07 1.40 5.43 -3.82 -0.02 1.38 16 11 N -0.68 -12.06 5.42 -106.43 -0.58 -12.64 16 12 C 0.06 0.86 2.46 -67.44 -0.17 0.70 16 13 H 0.04 0.61 7.80 -51.93 -0.41 0.21 16 14 C 0.06 0.90 5.72 -3.75 -0.02 0.88 16 15 N -0.53 -6.84 5.22 -233.21 -1.22 -8.06 16 16 C 0.06 0.72 6.09 -3.74 -0.02 0.69 16 17 C -0.14 -1.72 5.61 -26.47 -0.15 -1.87 16 18 C -0.09 -1.16 2.77 -90.01 -0.25 -1.41 16 19 C -0.15 -1.57 5.90 -25.59 -0.15 -1.72 16 20 C 0.05 0.56 6.13 -2.86 -0.02 0.54 16 21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.06 1.25 8.04 -51.93 -0.42 0.83 16 25 H 0.01 0.28 8.06 -51.93 -0.42 -0.14 16 26 H 0.33 5.82 8.24 -39.29 -0.32 5.50 16 27 H 0.09 1.51 7.86 -51.93 -0.41 1.10 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.08 7.52 -51.93 -0.39 0.69 16 33 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 287.82 15.07 4.34 4.34 Total: -1.00 -29.56 287.82 -9.65 -39.21 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.56 Total: 0.67 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -1.35 Total: -13.94 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: -1.06 Total: -47.08 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.56 -9.65 -39.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020070751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.114 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds