Wall clock time and date at job start Mon Mar 30 2020 03:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 N 1.46901 * 109.46769 * 180.02562 * 10 9 7 12 12 C 1.46906 * 110.99793 * 180.02562 * 11 10 9 13 13 H 1.09000 * 109.57771 * 34.73740 * 12 11 10 14 14 C 1.53139 * 109.57853 * 274.34056 * 12 11 10 15 15 N 1.46898 * 109.37325 * 240.20941 * 14 12 11 16 16 C 1.46948 * 111.05803 * 61.99079 * 15 14 12 17 17 C 1.53120 * 109.35262 * 298.03955 * 16 15 14 18 18 C 1.53384 * 109.57557 * 155.00311 * 12 11 10 19 19 C 1.53395 * 108.59902 * 179.55455 * 18 12 11 20 20 C 1.46944 * 111.05847 * 297.99416 * 15 14 12 21 21 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 22 22 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 23 23 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 24 24 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 25 25 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 26 26 H 1.00899 * 111.00283 * 303.95539 * 11 10 9 27 27 H 1.08999 * 109.49093 * 0.18417 * 14 12 11 28 28 H 1.09006 * 109.48570 * 120.23754 * 14 12 11 29 29 H 1.09000 * 109.49106 * 178.07152 * 16 15 14 30 30 H 1.09001 * 109.50626 * 58.01380 * 16 15 14 31 31 H 1.08999 * 109.57979 * 240.13598 * 17 16 15 32 32 H 1.09002 * 109.68299 * 119.81306 * 17 16 15 33 33 H 1.09004 * 110.11375 * 300.19074 * 18 12 11 34 34 H 1.08999 * 109.57463 * 60.80243 * 19 18 12 35 35 H 1.08994 * 109.57618 * 181.18335 * 19 18 12 36 36 H 1.08997 * 109.49435 * 181.91220 * 20 15 14 37 37 H 1.09002 * 109.49139 * 301.97174 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 7 1.5108 -4.9342 0.0020 12 6 2.4354 -6.0759 0.0024 13 1 3.3211 -5.8284 0.5874 14 6 2.8431 -6.4065 -1.4362 15 7 2.4356 -7.7815 -1.7545 16 6 0.9761 -7.9318 -1.6733 17 6 0.5152 -7.6442 -0.2417 18 6 1.7409 -7.2994 0.6135 19 6 2.7208 -8.4793 0.5927 20 6 3.1133 -8.7488 -0.8802 21 1 -0.4850 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5564 0.8919 24 1 2.8714 -3.6047 -0.8890 25 1 2.8726 -3.6039 0.8910 26 1 0.8747 -4.9842 0.7836 27 1 2.3535 -5.7143 -2.1212 28 1 3.9246 -6.3149 -1.5378 29 1 0.6996 -8.9501 -1.9469 30 1 0.4993 -7.2294 -2.3570 31 1 0.0211 -8.5256 0.1669 32 1 -0.1786 -6.8035 -0.2413 33 1 1.4351 -7.0842 1.6375 34 1 3.6014 -8.2333 1.1862 35 1 2.2359 -9.3641 1.0049 36 1 2.8191 -9.7603 -1.1599 37 1 4.1927 -8.6412 -0.9866 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020070751.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:38 Heat of formation + Delta-G solvation = -26.489702 kcal Electronic energy + Delta-G solvation = -15869.260974 eV Core-core repulsion = 13451.573228 eV Total energy + Delta-G solvation = -2417.687746 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.61248 -37.13178 -35.00053 -33.07310 -31.88685 -31.75989 -29.18645 -26.05658 -24.06323 -23.82308 -22.96699 -22.26005 -18.61191 -18.33223 -17.50342 -17.22505 -16.87390 -16.46229 -15.85825 -15.00212 -14.70491 -14.18248 -13.90463 -13.83897 -13.50478 -13.17782 -13.04403 -12.99515 -12.87906 -12.62723 -12.46726 -12.40754 -12.06468 -11.79144 -11.45440 -11.32219 -11.15738 -10.90533 -10.58282 -9.50950 -8.99022 -8.21863 -6.33687 1.39405 1.41200 1.52075 2.39377 3.11583 3.12235 3.23643 3.62953 3.83576 3.95346 4.20820 4.28582 4.29929 4.39313 4.41227 4.47840 4.54905 4.58564 4.70830 4.92280 5.00016 5.01477 5.03871 5.08600 5.16242 5.24584 5.26222 5.37567 5.43162 5.64876 5.76684 6.09281 6.13573 6.21604 6.33315 6.51810 6.83421 7.35829 8.90330 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.057356 B = 0.005264 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.065690 B = 5317.814106 C = 5423.560928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.968 3.032 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.034 3.966 10 C 0.087 3.913 11 N -0.683 5.683 12 C 0.058 3.942 13 H 0.036 0.964 14 C 0.067 3.933 15 N -0.536 5.536 16 C 0.058 3.942 17 C -0.138 4.138 18 C -0.092 4.092 19 C -0.140 4.140 20 C 0.050 3.950 21 H 0.264 0.736 22 H -0.006 1.006 23 H -0.010 1.010 24 H 0.056 0.944 25 H 0.014 0.986 26 H 0.335 0.665 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.023 -18.242 0.368 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.003 4.003 10 C -0.042 4.042 11 N -0.314 5.314 12 C -0.053 4.053 13 H 0.054 0.946 14 C -0.063 4.063 15 N -0.256 5.256 16 C -0.071 4.071 17 C -0.177 4.177 18 C -0.111 4.111 19 C -0.180 4.180 20 C -0.078 4.078 21 H 0.073 0.927 22 H 0.012 0.988 23 H 0.008 0.992 24 H 0.075 0.925 25 H 0.032 0.968 26 H 0.153 0.847 27 H 0.083 0.917 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.110 0.890 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.952 -18.251 -0.843 18.929 hybrid contribution 0.101 1.513 1.827 2.374 sum 5.053 -16.738 0.984 17.512 Atomic orbital electron populations 1.70105 1.07851 1.27843 1.51376 1.25975 0.95759 1.03384 0.94529 0.85415 0.78606 0.78255 0.78562 1.19695 1.20607 1.18745 1.21610 0.93492 0.92300 1.51043 0.92254 1.18897 0.94236 0.92301 0.94916 1.21785 0.95495 0.88519 0.98381 1.60701 1.19767 1.01371 1.49572 1.22310 0.94168 0.90798 0.98021 0.94631 1.22192 1.00025 0.89905 0.94134 1.62557 1.07290 1.03897 1.51884 1.22133 0.87265 1.02154 0.95507 1.22070 0.97135 1.01782 0.96689 1.21336 0.96343 0.94568 0.98874 1.22516 0.99043 0.97698 0.98711 1.22601 0.99263 0.96427 0.89549 0.92705 0.98798 0.99211 0.92525 0.96756 0.84745 0.91682 0.90773 0.89257 0.92112 0.90476 0.92393 0.91009 0.91319 0.89921 0.89049 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.61 13.29 21.45 0.28 -57.32 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -31.76 9.11 25.60 0.23 -31.52 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.85 5.23 29.85 0.16 2.01 16 10 C 0.09 3.76 5.43 86.30 0.47 4.23 16 11 N -0.68 -24.64 5.42 -490.64 -2.66 -27.30 16 12 C 0.06 1.70 2.46 45.09 0.11 1.81 16 13 H 0.04 1.08 7.80 -2.39 -0.02 1.06 16 14 C 0.07 1.90 5.72 86.35 0.49 2.39 16 15 N -0.54 -12.96 5.22 -891.75 -4.65 -17.61 16 16 C 0.06 1.33 6.09 86.33 0.53 1.86 16 17 C -0.14 -3.15 5.61 30.77 0.17 -2.98 16 18 C -0.09 -2.14 2.77 -10.40 -0.03 -2.17 16 19 C -0.14 -2.55 5.90 31.34 0.18 -2.36 16 20 C 0.05 0.93 6.13 86.90 0.53 1.46 16 21 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 22 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 23 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 24 H 0.06 2.45 8.04 -2.39 -0.02 2.44 16 25 H 0.01 0.61 8.06 -2.39 -0.02 0.59 16 26 H 0.33 11.93 8.24 -89.69 -0.74 11.20 16 27 H 0.06 2.20 7.86 -2.39 -0.02 2.18 16 28 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 30 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.57 7.52 -2.39 -0.02 1.55 16 33 H 0.07 1.69 8.13 -2.38 -0.02 1.67 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -63.83 287.82 -1.41 -65.24 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.28 Total: 14.96 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: 3.31 Total: -24.73 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -7.03 Total: -102.24 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -63.83 -1.41 -65.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020070751.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.754 kcal (2) G-P(sol) polarization free energy of solvation -63.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds