Wall clock time and date at job start Mon Mar 30 2020 03:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46902 * 109.47217 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99931 * 179.97438 * 11 10 9 13 13 H 1.09005 * 109.57819 * 325.26238 * 12 11 10 14 14 C 1.53138 * 109.57908 * 85.65634 * 12 11 10 15 15 N 1.46915 * 109.37044 * 119.78834 * 14 12 11 16 16 C 1.46935 * 111.05660 * 298.01565 * 15 14 12 17 17 C 1.53123 * 109.35790 * 61.95956 * 16 15 14 18 18 C 1.53384 * 109.57907 * 204.99852 * 12 11 10 19 19 C 1.53389 * 108.59892 * 181.23986 * 18 12 11 20 20 C 1.46945 * 111.04987 * 62.00902 * 15 14 12 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 25 25 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 26 26 H 1.00894 * 110.99798 * 56.04180 * 11 10 9 27 27 H 1.08999 * 109.49108 * 239.76157 * 14 12 11 28 28 H 1.09001 * 109.48730 * 359.82543 * 14 12 11 29 29 H 1.09004 * 109.48907 * 301.99276 * 16 15 14 30 30 H 1.08999 * 109.49236 * 181.92663 * 16 15 14 31 31 H 1.09001 * 109.57579 * 240.24202 * 17 16 15 32 32 H 1.08994 * 109.57779 * 119.86106 * 17 16 15 33 33 H 1.09003 * 110.11042 * 59.80370 * 18 12 11 34 34 H 1.08998 * 109.57072 * 178.80846 * 19 18 12 35 35 H 1.08993 * 109.57638 * 299.19594 * 19 18 12 36 36 H 1.08995 * 109.49194 * 58.00925 * 20 15 14 37 37 H 1.09008 * 109.48754 * 178.05841 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 2.4352 -6.0760 -0.0018 13 1 3.3209 -5.8284 -0.5869 14 6 2.8431 -6.4067 1.4367 15 7 2.4355 -7.7819 1.7548 16 6 0.9761 -7.9321 1.6737 17 6 0.5150 -7.6443 0.2422 18 6 1.7407 -7.2994 -0.6131 19 6 2.7138 -8.4845 -0.5742 20 6 3.1131 -8.7490 0.8803 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 2.8719 -3.6044 -0.8906 25 1 2.8719 -3.6044 0.8894 26 1 0.8745 -4.9841 -0.7827 27 1 3.9245 -6.3153 1.5382 28 1 2.3534 -5.7147 2.1218 29 1 0.4996 -7.2294 2.3575 30 1 0.6995 -8.9503 1.9471 31 1 -0.1777 -6.8027 0.2439 32 1 0.0209 -8.5256 -0.1665 33 1 1.4348 -7.0840 -1.6369 34 1 2.2283 -9.3692 -0.9862 35 1 3.6020 -8.2471 -1.1595 36 1 4.1925 -8.6412 0.9863 37 1 2.8193 -9.7607 1.1603 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020070754.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:41 Heat of formation + Delta-G solvation = -5.885813 kcal Electronic energy + Delta-G solvation = -15872.180127 eV Core-core repulsion = 13455.385833 eV Total energy + Delta-G solvation = -2416.794294 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.61985 -35.56525 -32.98894 -31.95643 -30.90842 -30.24750 -27.59819 -24.14156 -23.00759 -22.85887 -21.68077 -20.44942 -17.36942 -16.46541 -16.33789 -16.15246 -15.67293 -14.56356 -14.33159 -13.50806 -13.19621 -12.94414 -12.69591 -12.39839 -12.13123 -12.03675 -11.99585 -11.69224 -11.43648 -11.07802 -10.91067 -10.74689 -10.53611 -10.23488 -10.12102 -9.91694 -9.34139 -9.13234 -8.36963 -8.25303 -7.72076 -5.99516 -4.02044 3.32491 3.38480 3.41635 4.11170 4.40989 4.54784 4.62856 4.85164 5.05294 5.18938 5.23625 5.31145 5.36528 5.39356 5.46280 5.55981 5.67454 5.86124 5.87507 5.98307 6.02013 6.19465 6.24331 6.28443 6.35050 6.38866 6.46703 6.98748 7.15771 7.20044 7.51565 7.73377 7.83430 7.96310 8.08809 8.44137 9.05249 9.61783 11.11933 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.057510 B = 0.005264 C = 0.005160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.755181 B = 5318.057755 C = 5424.897426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.275 1.275 6 H -0.286 1.286 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.026 3.974 10 C 0.066 3.934 11 N -0.681 5.681 12 C 0.058 3.942 13 H 0.039 0.961 14 C 0.062 3.938 15 N -0.531 5.531 16 C 0.058 3.942 17 C -0.142 4.142 18 C -0.092 4.092 19 C -0.147 4.147 20 C 0.052 3.948 21 H 0.260 0.740 22 H 0.025 0.975 23 H 0.012 0.988 24 H 0.013 0.987 25 H 0.058 0.942 26 H 0.334 0.666 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 -17.115 -0.024 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.062 4.062 11 N -0.312 5.312 12 C -0.054 4.054 13 H 0.057 0.943 14 C -0.066 4.066 15 N -0.251 5.251 16 C -0.070 4.070 17 C -0.181 4.181 18 C -0.111 4.111 19 C -0.187 4.187 20 C -0.077 4.077 21 H 0.070 0.930 22 H 0.043 0.957 23 H 0.031 0.969 24 H 0.031 0.969 25 H 0.077 0.923 26 H 0.152 0.848 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.685 -17.099 1.185 17.532 hybrid contribution 0.536 1.211 -1.947 2.355 sum 4.221 -15.888 -0.761 16.456 Atomic orbital electron populations 1.69975 1.06041 1.26577 1.50690 1.25002 0.94833 0.99209 0.95288 0.86589 0.79783 0.83451 0.78140 1.20593 1.19948 1.21226 1.21180 0.92969 0.91048 1.50847 0.92803 1.19058 0.93996 0.90454 0.97622 1.22198 0.96936 0.88538 0.98510 1.60782 1.19326 1.01738 1.49380 1.22228 0.94742 0.91019 0.97395 0.94268 1.22330 0.99977 0.89111 0.95219 1.62545 1.06800 1.04560 1.51185 1.22109 0.87637 1.01378 0.95867 1.22127 0.97653 1.01724 0.96625 1.21318 0.95840 0.94774 0.99189 1.22252 0.99425 0.98202 0.98800 1.22192 0.99079 0.96352 0.90067 0.93001 0.95676 0.96946 0.96861 0.92334 0.84847 0.91408 0.89026 0.90291 0.91484 0.90275 0.92567 0.90890 0.91785 0.91915 0.90966 0.91010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.12 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.69 5.23 -27.89 -0.15 0.54 16 10 C 0.07 1.40 5.43 -3.82 -0.02 1.38 16 11 N -0.68 -12.05 5.42 -106.43 -0.58 -12.63 16 12 C 0.06 0.86 2.47 -67.44 -0.17 0.70 16 13 H 0.04 0.61 7.80 -51.93 -0.41 0.21 16 14 C 0.06 0.90 5.72 -3.74 -0.02 0.88 16 15 N -0.53 -6.85 5.22 -234.29 -1.22 -8.08 16 16 C 0.06 0.72 6.09 -3.74 -0.02 0.69 16 17 C -0.14 -1.73 5.59 -26.47 -0.15 -1.88 16 18 C -0.09 -1.15 2.82 -90.02 -0.25 -1.40 16 19 C -0.15 -1.57 5.75 -26.46 -0.15 -1.72 16 20 C 0.05 0.56 6.09 -3.73 -0.02 0.54 16 21 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.02 0.71 8.14 -51.92 -0.42 0.29 16 23 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.01 0.28 8.06 -51.93 -0.42 -0.14 16 25 H 0.06 1.25 8.04 -51.93 -0.42 0.83 16 26 H 0.33 5.82 8.24 -39.29 -0.32 5.49 16 27 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.51 7.86 -51.93 -0.41 1.10 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.08 7.52 -51.93 -0.39 0.69 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 LS Contribution 287.69 15.07 4.34 4.34 Total: -1.00 -29.56 287.69 -9.67 -39.23 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.55 Total: 0.67 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: -1.37 Total: -13.94 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -1.06 Total: -47.09 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -29.56 -9.67 -39.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020070754.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.346 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds