Wall clock time and date at job start Mon Mar 30 2020 03:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48502 * 109.47070 * 240.00380 * 3 2 1 5 5 H 1.48501 * 109.47274 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46786 * 120.00704 * 3 2 1 7 7 C 1.38810 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99769 * 196.85749 * 7 2 1 9 9 N 1.36936 * 120.00289 * 16.85335 * 7 2 1 10 10 C 1.46931 * 120.62798 * 208.13381 * 9 7 2 11 11 C 1.53184 * 108.77528 * 233.58740 * 10 9 7 12 12 C 1.53045 * 109.34180 * 305.38174 * 11 10 9 13 13 C 1.53048 * 109.53416 * 61.31582 * 12 11 10 14 14 H 1.09002 * 109.49600 * 58.65228 * 13 12 11 15 15 C 1.53003 * 109.49435 * 178.71656 * 13 12 11 16 16 H 1.09004 * 110.72479 * 57.29595 * 15 13 12 17 17 C 1.54932 * 110.66711 * 294.19980 * 15 13 12 18 18 C 1.54599 * 102.92164 * 204.15281 * 17 15 13 19 19 C 1.53992 * 105.13873 * 21.95404 * 18 17 15 20 20 N 1.47904 * 107.05857 * 1.22760 * 19 18 17 21 21 C 1.46918 * 120.63163 * 28.11350 * 9 7 2 22 22 H 0.97005 * 119.99683 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.58630 * 353.37758 * 10 9 7 24 24 H 1.09004 * 109.58462 * 113.80194 * 10 9 7 25 25 H 1.08999 * 109.49847 * 65.31627 * 11 10 9 26 26 H 1.09003 * 109.49797 * 185.42265 * 11 10 9 27 27 H 1.08998 * 109.43160 * 301.31715 * 12 11 10 28 28 H 1.08993 * 109.48790 * 181.35171 * 12 11 10 29 29 H 1.09003 * 110.72604 * 85.79546 * 17 15 13 30 30 H 1.09001 * 110.72495 * 322.50825 * 17 15 13 31 31 H 1.09002 * 110.30902 * 263.04246 * 18 17 15 32 32 H 1.08993 * 110.39509 * 140.91812 * 18 17 15 33 33 H 1.08998 * 109.92401 * 241.87176 * 19 18 17 34 34 H 1.09005 * 110.08104 * 120.67126 * 19 18 17 35 35 H 1.00901 * 110.99842 * 95.17870 * 20 19 18 36 36 H 1.09002 * 109.58898 * 6.62649 * 21 9 7 37 37 H 1.09000 * 109.58668 * 246.20392 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2224 0.2707 9 7 1.3696 -2.3624 -0.3449 10 6 1.8146 -3.6529 0.1988 11 6 2.0664 -4.6175 -0.9643 12 6 0.8100 -4.7016 -1.8341 13 6 0.4937 -3.3198 -2.4113 14 1 1.3421 -2.9680 -2.9984 15 6 -0.7438 -3.4114 -3.3063 16 1 -1.5940 -3.8061 -2.7498 17 6 -0.4536 -4.2842 -4.5531 18 6 -1.4892 -3.7736 -5.5812 19 6 -1.8703 -2.3611 -5.1005 20 7 -1.0690 -2.0843 -3.8886 21 6 0.2242 -2.3406 -1.2646 22 1 -0.4850 0.8401 0.0004 23 1 2.7363 -3.5131 0.7637 24 1 1.0421 -4.0605 0.8509 25 1 2.9002 -4.2537 -1.5646 26 1 2.3040 -5.6063 -0.5719 27 1 -0.0290 -5.0423 -1.2273 28 1 0.9783 -5.4057 -2.6489 29 1 -0.6172 -5.3390 -4.3322 30 1 0.5617 -4.1173 -4.9129 31 1 -2.3665 -4.4205 -5.5877 32 1 -1.0462 -3.7281 -6.5760 33 1 -2.9327 -2.3248 -4.8595 34 1 -1.6399 -1.6279 -5.8735 35 1 -0.2290 -1.5750 -4.1191 36 1 0.0964 -1.3350 -1.6653 37 1 -0.6780 -2.6411 -0.7318 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037918023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:15 Heat of formation + Delta-G solvation = 8.386585 kcal Electronic energy + Delta-G solvation = -16371.110738 eV Core-core repulsion = 13954.935342 eV Total energy + Delta-G solvation = -2416.175396 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.91833 -36.71557 -33.08584 -31.23932 -30.00446 -29.39136 -27.01584 -25.10789 -22.32033 -22.03346 -20.45624 -19.98645 -19.03185 -16.60741 -15.68342 -15.07183 -14.70253 -14.08390 -13.65715 -13.62140 -13.35823 -12.85294 -12.62448 -12.35897 -12.13578 -11.47795 -11.29845 -11.02254 -10.90098 -10.81744 -10.54392 -10.47818 -10.35143 -10.14996 -9.98147 -9.79592 -9.36637 -9.22686 -8.36017 -8.13180 -6.54029 -5.66561 -3.09924 3.44211 3.50119 3.51129 4.53108 4.58557 4.94255 4.96313 5.26843 5.40397 5.50457 5.57999 5.64174 5.72021 5.75646 5.82784 5.90542 5.97942 6.10193 6.16262 6.26365 6.32238 6.39468 6.48553 6.55679 6.61280 6.80023 6.88935 7.00418 7.10897 7.24521 7.56399 7.79081 7.85540 7.96434 8.58131 9.33344 9.97040 10.54587 11.40644 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.009670 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.000225 B = 2894.867033 C = 3707.705295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.005 3.995 3 Si 0.899 3.101 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.257 4.257 8 H 0.062 0.938 9 N -0.594 5.594 10 C 0.143 3.857 11 C -0.133 4.133 12 C -0.101 4.101 13 C -0.109 4.109 14 H 0.059 0.941 15 C 0.087 3.913 16 H 0.082 0.918 17 C -0.152 4.152 18 C -0.152 4.152 19 C 0.041 3.959 20 N -0.661 5.661 21 C 0.185 3.815 22 H 0.254 0.746 23 H 0.050 0.950 24 H 0.015 0.985 25 H 0.055 0.945 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.338 0.662 36 H 0.097 0.903 37 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.156 -8.113 -8.898 12.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.194 4.194 3 Si 0.729 3.271 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.210 1.210 7 C -0.387 4.387 8 H 0.080 0.920 9 N -0.317 5.317 10 C 0.017 3.983 11 C -0.173 4.173 12 C -0.139 4.139 13 C -0.129 4.129 14 H 0.078 0.922 15 C -0.024 4.024 16 H 0.100 0.900 17 C -0.192 4.192 18 C -0.192 4.192 19 C -0.089 4.089 20 N -0.288 5.288 21 C 0.059 3.941 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.033 0.967 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.155 0.845 36 H 0.115 0.885 37 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -1.837 -7.740 -8.410 11.576 hybrid contribution 1.065 0.409 -0.728 1.354 sum -0.772 -7.330 -9.138 11.740 Atomic orbital electron populations 1.70029 1.05072 1.25495 1.53262 1.25036 0.95250 0.98209 1.00945 0.86426 0.78918 0.83718 0.77993 1.21154 1.21660 1.21043 1.19103 0.92404 0.84942 1.42223 0.92017 1.44093 1.36059 1.01406 1.50101 1.20905 0.97338 0.87223 0.92839 1.22001 0.97495 0.98744 0.99035 1.21398 0.97994 0.96413 0.98137 1.21962 0.95100 0.97371 0.98501 0.92209 1.22723 0.98101 0.87680 0.93861 0.89956 1.23194 0.98780 1.00555 0.96634 1.22810 0.99247 0.98189 0.98919 1.22731 0.99493 0.94755 0.91935 1.62742 1.23934 1.17621 1.24548 1.20733 0.87942 0.98385 0.87004 0.93596 0.93148 0.96717 0.92651 0.93394 0.92819 0.93844 0.91411 0.91755 0.91765 0.92124 0.91110 0.92219 0.84501 0.88535 0.96717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 11.19 55.49 0.62 -25.92 16 2 C 0.00 0.14 4.92 -17.43 -0.09 0.05 16 3 Si 0.90 22.10 29.59 -169.99 -5.03 17.07 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.26 -7.24 9.58 -15.06 -0.14 -7.38 16 8 H 0.06 1.71 7.89 -52.48 -0.41 1.29 16 9 N -0.59 -15.34 2.99 -172.33 -0.52 -15.86 16 10 C 0.14 3.13 6.52 -3.71 -0.02 3.11 16 11 C -0.13 -2.40 6.08 -26.61 -0.16 -2.56 16 12 C -0.10 -1.74 5.03 -26.68 -0.13 -1.88 16 13 C -0.11 -2.07 1.86 -90.50 -0.17 -2.24 16 14 H 0.06 1.20 8.11 -51.93 -0.42 0.77 16 15 C 0.09 1.44 2.78 -65.79 -0.18 1.25 16 16 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 17 C -0.15 -2.06 5.64 -24.87 -0.14 -2.20 16 18 C -0.15 -1.84 6.93 -25.37 -0.18 -2.01 16 19 C 0.04 0.56 7.51 -2.75 -0.02 0.54 16 20 N -0.66 -11.23 6.78 -103.18 -0.70 -11.93 16 21 C 0.19 4.50 4.37 -3.72 -0.02 4.48 16 22 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 23 H 0.05 1.08 7.93 -51.93 -0.41 0.66 16 24 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.04 0.65 7.34 -51.93 -0.38 0.27 16 29 H 0.07 0.85 8.01 -51.93 -0.42 0.43 16 30 H 0.06 0.88 8.03 -51.93 -0.42 0.46 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.34 5.84 8.62 -39.29 -0.34 5.50 16 36 H 0.10 2.62 5.78 -51.93 -0.30 2.32 16 37 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 284.53 15.07 4.29 4.29 Total: -1.00 -29.56 284.53 -9.05 -38.61 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.46 Total: 2.59 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -1.25 Total: -8.84 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.59 Total: -53.71 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.07 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.56 -9.05 -38.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037918023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.997 kcal (2) G-P(sol) polarization free energy of solvation -29.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds