Wall clock time and date at job start Mon Mar 30 2020 03:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86804 * 119.99914 * 2 1 4 4 H 1.48502 * 109.47070 * 240.00380 * 3 2 1 5 5 H 1.48501 * 109.47274 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46786 * 120.00704 * 3 2 1 7 7 C 1.38810 * 119.99769 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99769 * 196.85749 * 7 2 1 9 9 N 1.36936 * 120.00289 * 16.85335 * 7 2 1 10 10 C 1.46931 * 120.62798 * 208.13381 * 9 7 2 11 11 C 1.53184 * 108.77528 * 233.58740 * 10 9 7 12 12 C 1.53045 * 109.34180 * 305.38174 * 11 10 9 13 13 C 1.53048 * 109.53416 * 61.31582 * 12 11 10 14 14 H 1.09002 * 109.49600 * 58.65228 * 13 12 11 15 15 C 1.53003 * 109.49435 * 178.71656 * 13 12 11 16 16 H 1.09004 * 110.72479 * 57.29595 * 15 13 12 17 17 C 1.54932 * 110.66711 * 294.19980 * 15 13 12 18 18 C 1.54599 * 102.92164 * 204.15281 * 17 15 13 19 19 C 1.53992 * 105.13873 * 21.95404 * 18 17 15 20 20 N 1.47904 * 107.05857 * 1.22760 * 19 18 17 21 21 C 1.46918 * 120.63163 * 28.11350 * 9 7 2 22 22 H 0.97005 * 119.99683 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.58630 * 353.37758 * 10 9 7 24 24 H 1.09004 * 109.58462 * 113.80194 * 10 9 7 25 25 H 1.08999 * 109.49847 * 65.31627 * 11 10 9 26 26 H 1.09003 * 109.49797 * 185.42265 * 11 10 9 27 27 H 1.08998 * 109.43160 * 301.31715 * 12 11 10 28 28 H 1.08993 * 109.48790 * 181.35171 * 12 11 10 29 29 H 1.09003 * 110.72604 * 85.79546 * 17 15 13 30 30 H 1.09001 * 110.72495 * 322.50825 * 17 15 13 31 31 H 1.09002 * 110.30902 * 263.04246 * 18 17 15 32 32 H 1.08993 * 110.39509 * 140.91812 * 18 17 15 33 33 H 1.08998 * 109.92401 * 241.87176 * 19 18 17 34 34 H 1.09005 * 110.08104 * 120.67126 * 19 18 17 35 35 H 1.00901 * 110.99842 * 95.17870 * 20 19 18 36 36 H 1.09002 * 109.58898 * 6.62649 * 21 9 7 37 37 H 1.09000 * 109.58668 * 246.20392 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2126 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2224 0.2707 9 7 1.3696 -2.3624 -0.3449 10 6 1.8146 -3.6529 0.1988 11 6 2.0664 -4.6175 -0.9643 12 6 0.8100 -4.7016 -1.8341 13 6 0.4937 -3.3198 -2.4113 14 1 1.3421 -2.9680 -2.9984 15 6 -0.7438 -3.4114 -3.3063 16 1 -1.5940 -3.8061 -2.7498 17 6 -0.4536 -4.2842 -4.5531 18 6 -1.4892 -3.7736 -5.5812 19 6 -1.8703 -2.3611 -5.1005 20 7 -1.0690 -2.0843 -3.8886 21 6 0.2242 -2.3406 -1.2646 22 1 -0.4850 0.8401 0.0004 23 1 2.7363 -3.5131 0.7637 24 1 1.0421 -4.0605 0.8509 25 1 2.9002 -4.2537 -1.5646 26 1 2.3040 -5.6063 -0.5719 27 1 -0.0290 -5.0423 -1.2273 28 1 0.9783 -5.4057 -2.6489 29 1 -0.6172 -5.3390 -4.3322 30 1 0.5617 -4.1173 -4.9129 31 1 -2.3665 -4.4205 -5.5877 32 1 -1.0462 -3.7281 -6.5760 33 1 -2.9327 -2.3248 -4.8595 34 1 -1.6399 -1.6279 -5.8735 35 1 -0.2290 -1.5750 -4.1191 36 1 0.0964 -1.3350 -1.6653 37 1 -0.6780 -2.6411 -0.7318 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037918023.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:15 Heat of formation + Delta-G solvation = -10.713270 kcal Electronic energy + Delta-G solvation = -16371.938970 eV Core-core repulsion = 13954.935342 eV Total energy + Delta-G solvation = -2417.003628 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.29227 -38.27944 -34.97707 -32.87614 -31.71218 -30.69470 -28.40098 -27.08787 -23.81849 -23.80537 -21.69910 -21.28121 -20.68677 -18.60746 -17.17469 -16.52292 -16.23321 -15.74304 -15.25831 -15.01597 -14.86354 -14.43393 -14.26836 -13.84178 -13.78741 -12.93836 -12.88483 -12.64215 -12.44106 -12.34363 -12.15608 -12.09186 -11.88432 -11.70995 -11.55388 -11.36120 -11.03211 -10.90916 -10.48708 -9.38513 -8.62054 -7.81292 -5.28575 1.46553 1.49165 1.56277 2.53332 3.28384 3.35428 3.65165 3.91065 3.97253 4.09185 4.20346 4.27067 4.30292 4.40283 4.62500 4.63947 4.71686 4.87498 4.89835 4.97559 5.00954 5.08200 5.10410 5.13719 5.16210 5.29629 5.35173 5.45526 5.49377 5.61963 5.73987 5.93590 6.05918 6.44437 6.49958 7.19883 7.92601 8.44245 9.22909 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.025872 B = 0.009670 C = 0.007550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.000225 B = 2894.867033 C = 3707.705295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.048 4.048 3 Si 0.966 3.034 4 H -0.278 1.278 5 H -0.294 1.294 6 H -0.276 1.276 7 C -0.270 4.270 8 H 0.063 0.937 9 N -0.615 5.615 10 C 0.135 3.865 11 C -0.123 4.123 12 C -0.097 4.097 13 C -0.094 4.094 14 H 0.052 0.948 15 C 0.087 3.913 16 H 0.070 0.930 17 C -0.142 4.142 18 C -0.144 4.144 19 C 0.038 3.962 20 N -0.690 5.690 21 C 0.197 3.803 22 H 0.249 0.751 23 H 0.049 0.951 24 H 0.008 0.992 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.333 0.667 36 H 0.063 0.937 37 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.337 -9.591 -10.490 14.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.244 4.244 3 Si 0.794 3.206 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.202 1.202 7 C -0.400 4.400 8 H 0.081 0.919 9 N -0.338 5.338 10 C 0.010 3.990 11 C -0.162 4.162 12 C -0.135 4.135 13 C -0.115 4.115 14 H 0.070 0.930 15 C -0.023 4.023 16 H 0.088 0.912 17 C -0.182 4.182 18 C -0.183 4.183 19 C -0.091 4.091 20 N -0.317 5.317 21 C 0.071 3.929 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.026 0.974 25 H 0.072 0.928 26 H 0.101 0.899 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.149 0.851 36 H 0.081 0.919 37 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges -1.005 -9.253 -10.007 13.667 hybrid contribution 0.790 0.863 -0.161 1.181 sum -0.215 -8.390 -10.168 13.185 Atomic orbital electron populations 1.70208 1.06577 1.25741 1.54728 1.25802 0.96005 1.01397 1.01179 0.85379 0.77573 0.79393 0.78301 1.20357 1.22048 1.20186 1.19448 0.92691 0.86233 1.41667 0.91938 1.44413 1.36149 1.02265 1.50998 1.21105 0.96837 0.86524 0.94539 1.21886 0.97744 0.99164 0.97398 1.21394 0.97497 0.95623 0.99023 1.21714 0.96034 0.97108 0.96630 0.92988 1.22615 0.96280 0.88564 0.94819 0.91217 1.23105 0.99386 1.00706 0.94954 1.22759 0.99411 0.96860 0.99228 1.22808 0.98770 0.96498 0.91049 1.62719 1.24106 1.18223 1.26683 1.20458 0.86334 0.98061 0.88007 0.94243 0.93219 0.97414 0.92830 0.89904 0.93056 0.90246 0.89706 0.91519 0.90451 0.90244 0.91375 0.90936 0.85113 0.91910 1.00330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.07 11.19 21.65 0.24 -56.83 16 2 C -0.05 -2.77 4.92 84.86 0.42 -2.35 16 3 Si 0.97 46.27 29.59 68.60 2.03 48.30 16 4 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 7 C -0.27 -15.51 9.58 84.03 0.81 -14.70 16 8 H 0.06 3.49 7.89 -2.91 -0.02 3.47 16 9 N -0.61 -32.43 2.99 -699.12 -2.09 -34.52 16 10 C 0.14 5.88 6.52 86.36 0.56 6.45 16 11 C -0.12 -4.14 6.08 30.67 0.19 -3.95 16 12 C -0.10 -3.13 5.03 30.63 0.15 -2.97 16 13 C -0.09 -3.56 1.86 -10.71 -0.02 -3.58 16 14 H 0.05 2.05 8.11 -2.39 -0.02 2.03 16 15 C 0.09 2.83 2.78 45.26 0.13 2.96 16 16 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 17 C -0.14 -3.41 5.64 31.80 0.18 -3.23 16 18 C -0.14 -3.01 6.93 31.47 0.22 -2.79 16 19 C 0.04 0.99 7.51 86.45 0.65 1.64 16 20 N -0.69 -23.51 6.78 -480.35 -3.26 -26.76 16 21 C 0.20 9.91 4.37 86.36 0.38 10.29 16 22 H 0.25 14.90 8.31 -92.70 -0.77 14.13 16 23 H 0.05 2.11 7.93 -2.39 -0.02 2.09 16 24 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 25 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 27 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.08 2.04 7.34 -2.39 -0.02 2.03 16 29 H 0.08 1.77 8.01 -2.39 -0.02 1.75 16 30 H 0.07 1.59 8.03 -2.39 -0.02 1.57 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.33 11.67 8.62 -89.69 -0.77 10.90 16 36 H 0.06 3.57 5.78 -2.39 -0.01 3.56 16 37 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 Total: -1.00 -65.61 284.53 0.83 -64.78 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.25 Total: 17.29 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 3.66 Total: -12.25 kcal Atomic # 7 Polarization: -113.01 SS G_CDS: -5.11 Total: -118.12 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -65.61 0.83 -64.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037918023.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.067 kcal (2) G-P(sol) polarization free energy of solvation -65.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds