Wall clock time and date at job start Mon Mar 30 2020 03:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00121 * 2 1 4 4 H 1.48501 * 109.47559 * 275.38127 * 3 2 1 5 5 H 1.48505 * 109.47169 * 35.37885 * 3 2 1 6 6 H 1.48498 * 109.47380 * 155.38067 * 3 2 1 7 7 C 1.38815 * 120.00132 * 180.28281 * 2 1 3 8 8 H 1.08000 * 119.99564 * 338.91955 * 7 2 1 9 9 N 1.36930 * 120.00243 * 158.92698 * 7 2 1 10 10 C 1.46931 * 120.62926 * 152.52788 * 9 7 2 11 11 C 1.53626 * 108.54229 * 126.36891 * 10 9 7 12 12 C 1.53034 * 109.24324 * 54.85258 * 11 10 9 13 13 C 1.53040 * 109.54373 * 298.51496 * 12 11 10 14 14 H 1.09010 * 109.49095 * 301.41595 * 13 12 11 15 15 C 1.52996 * 109.52812 * 181.33226 * 13 12 11 16 16 H 1.09001 * 110.32984 * 60.94557 * 15 13 12 17 17 C 1.54908 * 110.37466 * 183.31473 * 15 13 12 18 18 C 1.55133 * 101.65307 * 155.89766 * 17 15 13 19 19 C 1.54317 * 103.02301 * 324.34859 * 18 17 15 20 20 N 1.47448 * 107.22952 * 22.28176 * 19 18 17 21 21 C 1.46927 * 120.63111 * 332.80514 * 9 7 2 22 22 H 0.97002 * 119.99921 * 359.71511 * 1 2 3 23 23 H 1.08996 * 109.58677 * 246.19869 * 10 9 7 24 24 H 1.08995 * 109.58762 * 6.62702 * 10 9 7 25 25 H 1.09008 * 109.63189 * 294.86170 * 11 10 9 26 26 H 1.08997 * 109.45705 * 174.73774 * 11 10 9 27 27 H 1.09007 * 109.46125 * 178.48989 * 12 11 10 28 28 H 1.09008 * 109.46202 * 58.53247 * 12 11 10 29 29 H 1.08998 * 110.99254 * 273.99471 * 17 15 13 30 30 H 1.09005 * 110.98681 * 37.80447 * 17 15 13 31 31 H 1.09001 * 110.70828 * 205.96013 * 18 17 15 32 32 H 1.09003 * 110.85731 * 82.80406 * 18 17 15 33 33 H 1.08996 * 109.88605 * 262.88140 * 19 18 17 34 34 H 1.08999 * 109.88896 * 141.68552 * 19 18 17 35 35 H 1.00896 * 110.99750 * 238.71916 * 20 19 18 36 36 H 1.08997 * 109.58409 * 353.37370 * 21 9 7 37 37 H 1.09001 * 109.58773 * 113.80294 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3841 2.1121 -1.3939 5 1 1.5091 2.6172 0.8106 6 1 3.6000 1.4100 0.5832 7 6 2.0103 -1.2021 -0.0059 8 1 1.5245 -2.1078 0.3260 9 7 3.3109 -1.2397 -0.4325 10 6 4.2360 -2.2621 0.0753 11 6 4.8667 -2.9885 -1.1225 12 6 5.5155 -1.9599 -2.0515 13 6 4.4465 -1.0003 -2.5791 14 1 3.6799 -1.5656 -3.1093 15 6 5.0899 0.0073 -3.5337 16 1 5.5354 -0.5082 -4.3845 17 6 4.0406 1.0402 -4.0152 18 6 4.9394 2.2463 -4.3948 19 6 6.0616 2.1903 -3.3370 20 7 6.1106 0.8084 -2.8251 21 6 3.8095 -0.2548 -1.4021 22 1 -0.4850 0.8401 0.0042 23 1 5.0161 -1.7862 0.6695 24 1 3.6893 -2.9762 0.6909 25 1 4.0962 -3.5350 -1.6664 26 1 5.6246 -3.6860 -0.7661 27 1 5.9874 -2.4738 -2.8891 28 1 6.2687 -1.3968 -1.5003 29 1 3.4976 0.6690 -4.8843 30 1 3.3537 1.3030 -3.2106 31 1 4.3833 3.1807 -4.3177 32 1 5.3487 2.1248 -5.3977 33 1 5.8383 2.8796 -2.5227 34 1 7.0160 2.4503 -3.7948 35 1 5.9592 0.7866 -1.8278 36 1 2.9812 0.3558 -1.7614 37 1 4.5556 0.3814 -0.9259 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037918024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:18 Heat of formation + Delta-G solvation = 17.127307 kcal Electronic energy + Delta-G solvation = -16748.314159 eV Core-core repulsion = 14332.517789 eV Total energy + Delta-G solvation = -2415.796370 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.40077 -36.80973 -33.18349 -31.44436 -30.61507 -29.81285 -27.12275 -25.28108 -23.24272 -22.01168 -20.74943 -20.06123 -18.87126 -16.98611 -15.91787 -15.49525 -15.16813 -14.16256 -13.86624 -13.69163 -13.52269 -13.05059 -12.94490 -12.52302 -12.16558 -11.99378 -11.62482 -11.37407 -11.13406 -11.10227 -10.73694 -10.51523 -10.41996 -10.30927 -10.01683 -9.70371 -9.62090 -9.37621 -8.62485 -8.26166 -6.95354 -5.97016 -3.31273 3.24597 3.43951 3.45949 4.42719 4.49665 4.80605 4.89955 5.06468 5.11258 5.30824 5.40008 5.49313 5.53903 5.67630 5.69546 5.80467 5.88922 5.94667 6.05305 6.10717 6.13955 6.20148 6.27592 6.40749 6.43590 6.49335 6.65103 6.69560 6.73049 6.78263 7.03240 7.13990 7.59920 7.95821 8.31926 8.93847 9.70963 10.10190 11.19171 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.022760 B = 0.013624 C = 0.009759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.916450 B = 2054.756052 C = 2868.327867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.877 3.123 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.257 4.257 8 H 0.086 0.914 9 N -0.605 5.605 10 C 0.146 3.854 11 C -0.137 4.137 12 C -0.098 4.098 13 C -0.111 4.111 14 H 0.078 0.922 15 C 0.086 3.914 16 H 0.081 0.919 17 C -0.160 4.160 18 C -0.140 4.140 19 C 0.045 3.955 20 N -0.683 5.683 21 C 0.133 3.867 22 H 0.262 0.738 23 H 0.022 0.978 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.071 0.929 35 H 0.341 0.659 36 H 0.073 0.927 37 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.197 1.074 -6.893 13.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.176 4.176 3 Si 0.708 3.292 4 H -0.217 1.217 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.385 4.385 8 H 0.104 0.896 9 N -0.328 5.328 10 C 0.021 3.979 11 C -0.176 4.176 12 C -0.136 4.136 13 C -0.132 4.132 14 H 0.097 0.903 15 C -0.024 4.024 16 H 0.099 0.901 17 C -0.199 4.199 18 C -0.178 4.178 19 C -0.084 4.084 20 N -0.315 5.315 21 C 0.007 3.993 22 H 0.072 0.928 23 H 0.040 0.960 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.161 0.839 36 H 0.091 0.909 37 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 11.589 0.943 -7.236 13.695 hybrid contribution -0.483 1.430 0.361 1.551 sum 11.107 2.373 -6.876 13.276 Atomic orbital electron populations 1.69843 1.05662 1.26444 1.53136 1.25278 0.95210 0.97406 0.99703 0.87032 0.80305 0.85069 0.76836 1.21704 1.23113 1.19548 1.18958 0.85288 0.94738 1.39565 0.89618 1.44343 1.08817 1.33298 1.46372 1.21048 0.92273 0.91226 0.93387 1.22097 0.99378 0.97666 0.98467 1.21355 0.97098 0.96710 0.98435 1.21890 0.97776 0.96629 0.96922 0.90329 1.22519 0.89660 0.93743 0.96438 0.90073 1.23365 0.98572 0.95812 1.02130 1.22748 0.96969 0.98824 0.99308 1.22603 0.98322 0.90410 0.97071 1.61937 1.50253 1.09366 1.09924 1.21401 0.96851 0.91938 0.89089 0.92816 0.96030 0.92034 0.92143 0.92853 0.93108 0.92159 0.90845 0.90290 0.91472 0.91312 0.93420 0.91104 0.83917 0.90945 0.96253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.94 13.97 55.49 0.78 -27.16 16 2 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 3 Si 0.88 22.39 24.36 -169.99 -4.14 18.25 16 4 H -0.29 -7.06 6.11 56.52 0.35 -6.72 16 5 H -0.30 -7.91 7.11 56.52 0.40 -7.50 16 6 H -0.27 -6.79 6.49 56.52 0.37 -6.42 16 7 C -0.26 -7.24 10.03 -15.06 -0.15 -7.39 16 8 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 9 N -0.61 -14.47 2.77 -172.06 -0.48 -14.94 16 10 C 0.15 2.93 6.54 -3.48 -0.02 2.90 16 11 C -0.14 -2.29 6.10 -26.39 -0.16 -2.45 16 12 C -0.10 -1.59 5.00 -26.69 -0.13 -1.72 16 13 C -0.11 -1.99 2.23 -90.50 -0.20 -2.19 16 14 H 0.08 1.48 8.14 -51.92 -0.42 1.06 16 15 C 0.09 1.35 3.17 -66.19 -0.21 1.14 16 16 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 17 C -0.16 -2.52 6.38 -24.60 -0.16 -2.67 16 18 C -0.14 -1.87 6.94 -24.91 -0.17 -2.05 16 19 C 0.05 0.63 7.58 -2.83 -0.02 0.60 16 20 N -0.68 -10.54 6.81 -103.85 -0.71 -11.25 16 21 C 0.13 2.88 2.86 -3.71 -0.01 2.86 16 22 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 25 H 0.06 1.06 8.14 -51.92 -0.42 0.63 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.98 7.39 -51.92 -0.38 0.59 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.08 1.48 5.24 -51.93 -0.27 1.21 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.34 5.66 5.78 -39.29 -0.23 5.44 16 36 H 0.07 1.73 2.81 -51.93 -0.15 1.58 16 37 H 0.02 0.43 4.98 -51.93 -0.26 0.17 16 LS Contribution 269.73 15.07 4.06 4.06 Total: -1.00 -29.71 269.73 -7.82 -37.53 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.00 Total: 3.90 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: -1.33 Total: -10.38 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.41 Total: -53.35 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.14 Total: 18.25 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.71 -7.82 -37.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037918024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.655 kcal (2) G-P(sol) polarization free energy of solvation -29.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds