Wall clock time and date at job start Mon Mar 30 2020 03:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86796 * 120.00121 * 2 1 4 4 H 1.48501 * 109.47559 * 275.38127 * 3 2 1 5 5 H 1.48505 * 109.47169 * 35.37885 * 3 2 1 6 6 H 1.48498 * 109.47380 * 155.38067 * 3 2 1 7 7 C 1.38815 * 120.00132 * 180.28281 * 2 1 3 8 8 H 1.08000 * 119.99564 * 338.91955 * 7 2 1 9 9 N 1.36930 * 120.00243 * 158.92698 * 7 2 1 10 10 C 1.46931 * 120.62926 * 152.52788 * 9 7 2 11 11 C 1.53626 * 108.54229 * 126.36891 * 10 9 7 12 12 C 1.53034 * 109.24324 * 54.85258 * 11 10 9 13 13 C 1.53040 * 109.54373 * 298.51496 * 12 11 10 14 14 H 1.09010 * 109.49095 * 301.41595 * 13 12 11 15 15 C 1.52996 * 109.52812 * 181.33226 * 13 12 11 16 16 H 1.09001 * 110.32984 * 60.94557 * 15 13 12 17 17 C 1.54908 * 110.37466 * 183.31473 * 15 13 12 18 18 C 1.55133 * 101.65307 * 155.89766 * 17 15 13 19 19 C 1.54317 * 103.02301 * 324.34859 * 18 17 15 20 20 N 1.47448 * 107.22952 * 22.28176 * 19 18 17 21 21 C 1.46927 * 120.63111 * 332.80514 * 9 7 2 22 22 H 0.97002 * 119.99921 * 359.71511 * 1 2 3 23 23 H 1.08996 * 109.58677 * 246.19869 * 10 9 7 24 24 H 1.08995 * 109.58762 * 6.62702 * 10 9 7 25 25 H 1.09008 * 109.63189 * 294.86170 * 11 10 9 26 26 H 1.08997 * 109.45705 * 174.73774 * 11 10 9 27 27 H 1.09007 * 109.46125 * 178.48989 * 12 11 10 28 28 H 1.09008 * 109.46202 * 58.53247 * 12 11 10 29 29 H 1.08998 * 110.99254 * 273.99471 * 17 15 13 30 30 H 1.09005 * 110.98681 * 37.80447 * 17 15 13 31 31 H 1.09001 * 110.70828 * 205.96013 * 18 17 15 32 32 H 1.09003 * 110.85731 * 82.80406 * 18 17 15 33 33 H 1.08996 * 109.88605 * 262.88140 * 19 18 17 34 34 H 1.08999 * 109.88896 * 141.68552 * 19 18 17 35 35 H 1.00896 * 110.99750 * 238.71916 * 20 19 18 36 36 H 1.08997 * 109.58409 * 353.37370 * 21 9 7 37 37 H 1.09001 * 109.58773 * 113.80294 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3841 2.1121 -1.3939 5 1 1.5091 2.6172 0.8106 6 1 3.6000 1.4100 0.5832 7 6 2.0103 -1.2021 -0.0059 8 1 1.5245 -2.1078 0.3260 9 7 3.3109 -1.2397 -0.4325 10 6 4.2360 -2.2621 0.0753 11 6 4.8667 -2.9885 -1.1225 12 6 5.5155 -1.9599 -2.0515 13 6 4.4465 -1.0003 -2.5791 14 1 3.6799 -1.5656 -3.1093 15 6 5.0899 0.0073 -3.5337 16 1 5.5354 -0.5082 -4.3845 17 6 4.0406 1.0402 -4.0152 18 6 4.9394 2.2463 -4.3948 19 6 6.0616 2.1903 -3.3370 20 7 6.1106 0.8084 -2.8251 21 6 3.8095 -0.2548 -1.4021 22 1 -0.4850 0.8401 0.0042 23 1 5.0161 -1.7862 0.6695 24 1 3.6893 -2.9762 0.6909 25 1 4.0962 -3.5350 -1.6664 26 1 5.6246 -3.6860 -0.7661 27 1 5.9874 -2.4738 -2.8891 28 1 6.2687 -1.3968 -1.5003 29 1 3.4976 0.6690 -4.8843 30 1 3.3537 1.3030 -3.2106 31 1 4.3833 3.1807 -4.3177 32 1 5.3487 2.1248 -5.3977 33 1 5.8383 2.8796 -2.5227 34 1 7.0160 2.4503 -3.7948 35 1 5.9592 0.7866 -1.8278 36 1 2.9812 0.3558 -1.7614 37 1 4.5556 0.3814 -0.9259 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037918024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:18 Heat of formation + Delta-G solvation = -3.290796 kcal Electronic energy + Delta-G solvation = -16749.199555 eV Core-core repulsion = 14332.517789 eV Total energy + Delta-G solvation = -2416.681766 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.75583 -38.28739 -35.03646 -33.10284 -32.33585 -30.97240 -28.44210 -27.20273 -24.76945 -23.59976 -21.99831 -21.39988 -20.38183 -18.87469 -17.50217 -16.98482 -16.55062 -15.88175 -15.50612 -15.12876 -14.93075 -14.69542 -14.42931 -14.06097 -13.72339 -13.47977 -13.27908 -12.72709 -12.63430 -12.49193 -12.25373 -12.11153 -11.93032 -11.73826 -11.61138 -11.49545 -11.17743 -10.99701 -10.67550 -9.45404 -8.91572 -8.21586 -5.51508 1.19736 1.32753 1.41107 2.34928 2.99777 3.25341 3.31165 3.74557 3.78473 3.83974 4.08485 4.15296 4.23251 4.33399 4.43679 4.46191 4.54720 4.60767 4.70707 4.86907 4.92052 4.95565 4.99475 5.04608 5.09640 5.14403 5.24198 5.28060 5.29585 5.40756 5.61919 5.83438 5.95559 6.08919 6.35274 6.88842 7.59519 8.00663 8.98483 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.022760 B = 0.013624 C = 0.009759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.916450 B = 2054.756052 C = 2868.327867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.034 4.034 3 Si 0.941 3.059 4 H -0.276 1.276 5 H -0.311 1.311 6 H -0.262 1.262 7 C -0.248 4.248 8 H 0.053 0.947 9 N -0.621 5.621 10 C 0.138 3.862 11 C -0.128 4.128 12 C -0.092 4.092 13 C -0.104 4.104 14 H 0.063 0.937 15 C 0.093 3.907 16 H 0.101 0.899 17 C -0.167 4.167 18 C -0.134 4.134 19 C 0.041 3.959 20 N -0.683 5.683 21 C 0.134 3.866 22 H 0.261 0.739 23 H 0.034 0.966 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.044 0.956 34 H 0.091 0.909 35 H 0.333 0.667 36 H 0.047 0.953 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.149 1.449 -8.281 16.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.228 4.228 3 Si 0.770 3.230 4 H -0.203 1.203 5 H -0.240 1.240 6 H -0.186 1.186 7 C -0.377 4.377 8 H 0.070 0.930 9 N -0.345 5.345 10 C 0.014 3.986 11 C -0.167 4.167 12 C -0.130 4.130 13 C -0.125 4.125 14 H 0.082 0.918 15 C -0.017 4.017 16 H 0.119 0.881 17 C -0.206 4.206 18 C -0.172 4.172 19 C -0.088 4.088 20 N -0.313 5.313 21 C 0.009 3.991 22 H 0.070 0.930 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.062 0.938 34 H 0.109 0.891 35 H 0.151 0.849 36 H 0.065 0.935 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 14.597 1.306 -8.643 17.014 hybrid contribution -1.407 1.215 0.802 2.025 sum 13.190 2.521 -7.841 15.550 Atomic orbital electron populations 1.69969 1.07292 1.27097 1.55807 1.25867 0.95804 1.00673 1.00507 0.85994 0.78988 0.80734 0.77287 1.20252 1.24022 1.18623 1.18915 0.87158 0.93528 1.38135 0.92954 1.44508 1.07972 1.34642 1.47362 1.21270 0.91834 0.90477 0.95063 1.22005 0.99741 0.97956 0.96965 1.21340 0.96375 0.96159 0.99114 1.21759 0.98001 0.97096 0.95636 0.91833 1.22496 0.89649 0.93261 0.96279 0.88083 1.23367 0.98561 0.97278 1.01351 1.22752 0.96297 0.97819 1.00321 1.22737 0.99474 0.89415 0.97185 1.62035 1.49667 1.10323 1.09315 1.21391 0.96128 0.91687 0.89943 0.92995 0.94783 0.92932 0.93269 0.89506 0.90511 0.91598 0.89913 0.93800 0.91105 0.89132 0.93756 0.89050 0.84859 0.93496 0.95769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.96 13.97 21.65 0.30 -60.66 16 2 C -0.03 -2.01 5.23 84.86 0.44 -1.57 16 3 Si 0.94 47.36 24.36 68.60 1.67 49.04 16 4 H -0.28 -13.14 6.11 99.48 0.61 -12.53 16 5 H -0.31 -15.95 7.11 99.48 0.71 -15.25 16 6 H -0.26 -12.62 6.49 99.48 0.65 -11.97 16 7 C -0.25 -14.34 10.03 84.04 0.84 -13.50 16 8 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 9 N -0.62 -29.63 2.77 -698.26 -1.93 -31.56 16 10 C 0.14 5.36 6.54 86.51 0.57 5.93 16 11 C -0.13 -3.94 6.10 30.82 0.19 -3.75 16 12 C -0.09 -2.66 5.00 30.62 0.15 -2.50 16 13 C -0.10 -3.51 2.23 -10.72 -0.02 -3.53 16 14 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 15 C 0.09 2.65 3.17 45.39 0.14 2.79 16 16 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 17 C -0.17 -4.91 6.38 31.98 0.20 -4.71 16 18 C -0.13 -3.15 6.94 31.77 0.22 -2.93 16 19 C 0.04 0.99 7.58 86.64 0.66 1.65 16 20 N -0.68 -18.81 6.81 -482.47 -3.29 -22.10 16 21 C 0.13 5.65 2.86 86.36 0.25 5.89 16 22 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 23 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 24 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 25 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 26 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 27 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 28 H 0.07 1.87 7.39 -2.38 -0.02 1.85 16 29 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 30 H 0.04 1.61 5.24 -2.38 -0.01 1.60 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.33 10.11 5.78 -89.70 -0.52 9.59 16 36 H 0.05 2.24 2.81 -2.39 -0.01 2.23 16 37 H 0.02 1.02 4.98 -2.39 -0.01 1.01 16 Total: -1.00 -65.22 269.73 0.77 -64.46 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.37 Total: 17.06 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 3.64 Total: -16.24 kcal Atomic # 7 Polarization: -109.40 SS G_CDS: -4.91 Total: -114.31 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.67 Total: 49.04 kcal Total: -65.22 0.77 -64.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037918024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.164 kcal (2) G-P(sol) polarization free energy of solvation -65.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds