Wall clock time and date at job start Mon Mar 30 2020 03:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00011 * 2 1 4 4 H 1.48493 * 109.47389 * 274.06324 * 3 2 1 5 5 H 1.48500 * 109.47356 * 34.06804 * 3 2 1 6 6 H 1.48508 * 109.46955 * 154.06733 * 3 2 1 7 7 C 1.38819 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99795 * 197.51226 * 7 2 1 9 9 N 1.36937 * 119.99769 * 17.49728 * 7 2 1 10 10 C 1.46926 * 120.63154 * 27.99198 * 9 7 2 11 11 C 1.53192 * 108.77794 * 126.36292 * 10 9 7 12 12 C 1.53040 * 109.31190 * 54.63244 * 11 10 9 13 13 C 1.53038 * 109.54075 * 298.63641 * 12 11 10 14 14 H 1.08994 * 109.52647 * 301.39565 * 13 12 11 15 15 C 1.52999 * 109.49679 * 181.31205 * 13 12 11 16 16 H 1.08998 * 110.33643 * 299.36217 * 15 13 12 17 17 C 1.54913 * 110.37224 * 176.99198 * 15 13 12 18 18 C 1.55142 * 101.65368 * 204.10557 * 17 15 13 19 19 C 1.54323 * 103.01993 * 35.64908 * 18 17 15 20 20 N 1.47445 * 107.23471 * 337.71804 * 19 18 17 21 21 C 1.46932 * 120.63104 * 207.96206 * 9 7 2 22 22 H 0.97000 * 119.99896 * 0.02562 * 1 2 3 23 23 H 1.08991 * 109.58850 * 246.15013 * 10 9 7 24 24 H 1.09006 * 109.58503 * 6.57779 * 10 9 7 25 25 H 1.08995 * 109.49976 * 174.58927 * 11 10 9 26 26 H 1.08997 * 109.49691 * 294.68444 * 11 10 9 27 27 H 1.09000 * 109.46369 * 178.61551 * 12 11 10 28 28 H 1.09001 * 109.45634 * 58.65570 * 12 11 10 29 29 H 1.08994 * 110.99033 * 86.01023 * 17 15 13 30 30 H 1.08999 * 110.98555 * 322.18937 * 17 15 13 31 31 H 1.08998 * 110.70280 * 277.27132 * 18 17 15 32 32 H 1.08992 * 110.70997 * 154.03407 * 18 17 15 33 33 H 1.09000 * 109.88797 * 97.12281 * 19 18 17 34 34 H 1.09001 * 109.88870 * 218.31330 * 19 18 17 35 35 H 1.00895 * 111.00178 * 236.74106 * 20 19 18 36 36 H 1.08995 * 109.58591 * 113.84681 * 21 9 7 37 37 H 1.08998 * 109.57997 * 353.42237 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4118 2.0960 -1.3965 5 1 1.4933 2.6263 0.7843 6 1 3.5882 1.4168 0.6123 7 6 2.0103 -1.2022 -0.0005 8 1 3.0527 -1.2240 0.2809 9 7 1.3731 -2.3605 -0.3576 10 6 0.2348 -2.3331 -1.2863 11 6 0.5145 -3.3037 -2.4380 12 6 0.8272 -4.6890 -1.8677 13 6 2.0771 -4.6103 -0.9881 14 1 2.9156 -4.2416 -1.5787 15 6 2.4077 -6.0019 -0.4449 16 1 1.5825 -6.3785 0.1595 17 6 3.7135 -5.9596 0.3876 18 6 4.1932 -7.4319 0.2931 19 6 3.7819 -7.8405 -1.1371 20 7 2.6984 -6.9325 -1.5563 21 6 1.8151 -3.6545 0.1801 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6711 -2.6384 -0.7629 24 1 0.1093 -1.3246 -1.6806 25 1 -0.3619 -3.3651 -3.0830 26 1 1.3674 -2.9470 -3.0153 27 1 1.0025 -5.3875 -2.6859 28 1 -0.0163 -5.0345 -1.2700 29 1 3.5086 -5.6812 1.4213 30 1 4.4406 -5.2826 -0.0608 31 1 3.6845 -8.0511 1.0320 32 1 5.2744 -7.4937 0.4157 33 1 4.6326 -7.7386 -1.8109 34 1 3.4247 -8.8703 -1.1403 35 1 1.8736 -7.4508 -1.8190 36 1 1.0379 -4.0676 0.8231 37 1 2.7321 -3.5179 0.7532 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037918025.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:21 Heat of formation + Delta-G solvation = 7.709211 kcal Electronic energy + Delta-G solvation = -16181.737021 eV Core-core repulsion = 13765.532251 eV Total energy + Delta-G solvation = -2416.204770 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.94948 -36.72954 -33.12525 -30.85587 -30.46530 -29.85069 -26.93405 -25.12877 -22.32734 -22.05682 -20.66283 -19.78270 -18.89999 -16.80734 -16.34680 -15.26094 -14.69151 -14.15385 -13.64582 -13.37798 -13.00682 -12.87804 -12.61747 -12.41099 -12.10108 -11.81146 -11.46407 -11.16127 -11.02566 -10.84186 -10.64248 -10.52993 -10.30515 -10.07402 -10.02042 -9.77676 -9.33320 -9.24209 -8.39695 -8.25312 -6.57862 -5.71808 -3.13641 3.41959 3.48769 3.50119 4.30767 4.57115 4.75366 4.88087 5.07889 5.33482 5.44378 5.52727 5.57875 5.69757 5.75567 5.83478 5.90604 5.96567 6.04402 6.11655 6.31674 6.34478 6.45730 6.49413 6.58066 6.76044 6.83570 6.95740 7.02604 7.12152 7.18197 7.51060 7.52972 7.75761 7.86483 8.52660 9.28966 9.93164 10.50522 11.36458 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.040838 B = 0.007215 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.472637 B = 3879.732617 C = 4313.111652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.170 3.830 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.085 4.085 14 H 0.071 0.929 15 C 0.084 3.916 16 H 0.047 0.953 17 C -0.123 4.123 18 C -0.145 4.145 19 C 0.048 3.952 20 N -0.680 5.680 21 C 0.153 3.847 22 H 0.252 0.748 23 H 0.015 0.985 24 H 0.084 0.916 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.335 0.665 36 H 0.013 0.987 37 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.492 -13.421 -1.582 14.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.044 3.956 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.106 4.106 14 H 0.089 0.911 15 C -0.026 4.026 16 H 0.065 0.935 17 C -0.161 4.161 18 C -0.183 4.183 19 C -0.081 4.081 20 N -0.309 5.309 21 C 0.026 3.974 22 H 0.062 0.938 23 H 0.033 0.967 24 H 0.102 0.898 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.150 0.850 36 H 0.030 0.970 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.804 -12.819 -1.923 13.824 hybrid contribution -0.112 0.215 0.608 0.654 sum 4.693 -12.604 -1.315 13.513 Atomic orbital electron populations 1.70055 1.05256 1.25330 1.54160 1.25026 0.95257 0.98343 1.01137 0.86290 0.79157 0.83850 0.77589 1.21515 1.21844 1.20426 1.19212 0.92708 0.84995 1.40993 0.91762 1.44022 1.36329 1.01255 1.49767 1.20771 0.88548 0.98276 0.87956 1.22173 0.99809 0.96467 0.99694 1.21361 0.96790 0.97254 0.98287 1.21621 0.98148 0.92425 0.98413 0.91067 1.22436 0.96045 0.93928 0.90143 0.93519 1.22741 0.97317 0.95768 1.00318 1.22809 1.01305 0.97284 0.96937 1.22558 0.95722 0.94555 0.95282 1.61757 1.10914 1.19409 1.38792 1.20905 0.97164 0.86754 0.92538 0.93751 0.96701 0.89803 0.93663 0.92863 0.93130 0.93673 0.90806 0.90495 0.91885 0.91140 0.91176 0.93698 0.84978 0.96955 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.83 11.22 55.49 0.62 -26.21 16 2 C 0.00 0.02 4.90 -17.43 -0.09 -0.07 16 3 Si 0.90 22.13 29.59 -169.99 -5.03 17.10 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.25 -7.03 9.58 -15.06 -0.14 -7.17 16 8 H 0.06 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -15.32 2.99 -172.32 -0.52 -15.84 16 10 C 0.17 4.23 5.31 -3.71 -0.02 4.21 16 11 C -0.14 -2.90 6.08 -26.61 -0.16 -3.06 16 12 C -0.10 -1.78 5.05 -26.69 -0.13 -1.92 16 13 C -0.09 -1.55 2.08 -90.50 -0.19 -1.74 16 14 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 15 C 0.08 1.24 2.79 -66.18 -0.18 1.06 16 16 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 17 C -0.12 -1.67 5.58 -24.59 -0.14 -1.80 16 18 C -0.14 -1.59 6.94 -24.90 -0.17 -1.77 16 19 C 0.05 0.54 7.58 -2.83 -0.02 0.52 16 20 N -0.68 -9.05 6.39 -103.83 -0.66 -9.71 16 21 C 0.15 3.31 5.51 -3.71 -0.02 3.29 16 22 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 23 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.08 2.32 6.06 -51.93 -0.31 2.01 16 25 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.05 0.83 7.66 -51.93 -0.40 0.43 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.12 8.06 -51.93 -0.42 0.70 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.33 4.00 8.91 -39.29 -0.35 3.65 16 36 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.05 1.09 7.36 -51.93 -0.38 0.70 16 LS Contribution 284.87 15.07 4.29 4.29 Total: -1.00 -29.77 284.87 -9.05 -38.82 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -6.49 Total: -0.01 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -1.27 Total: -8.44 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.56 Total: -51.75 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.03 Total: 17.10 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -29.77 -9.05 -38.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037918025.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.529 kcal (2) G-P(sol) polarization free energy of solvation -29.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds