Wall clock time and date at job start Mon Mar 30 2020 03:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 120.00011 * 2 1 4 4 H 1.48493 * 109.47389 * 274.06324 * 3 2 1 5 5 H 1.48500 * 109.47356 * 34.06804 * 3 2 1 6 6 H 1.48508 * 109.46955 * 154.06733 * 3 2 1 7 7 C 1.38819 * 119.99970 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99795 * 197.51226 * 7 2 1 9 9 N 1.36937 * 119.99769 * 17.49728 * 7 2 1 10 10 C 1.46926 * 120.63154 * 27.99198 * 9 7 2 11 11 C 1.53192 * 108.77794 * 126.36292 * 10 9 7 12 12 C 1.53040 * 109.31190 * 54.63244 * 11 10 9 13 13 C 1.53038 * 109.54075 * 298.63641 * 12 11 10 14 14 H 1.08994 * 109.52647 * 301.39565 * 13 12 11 15 15 C 1.52999 * 109.49679 * 181.31205 * 13 12 11 16 16 H 1.08998 * 110.33643 * 299.36217 * 15 13 12 17 17 C 1.54913 * 110.37224 * 176.99198 * 15 13 12 18 18 C 1.55142 * 101.65368 * 204.10557 * 17 15 13 19 19 C 1.54323 * 103.01993 * 35.64908 * 18 17 15 20 20 N 1.47445 * 107.23471 * 337.71804 * 19 18 17 21 21 C 1.46932 * 120.63104 * 207.96206 * 9 7 2 22 22 H 0.97000 * 119.99896 * 0.02562 * 1 2 3 23 23 H 1.08991 * 109.58850 * 246.15013 * 10 9 7 24 24 H 1.09006 * 109.58503 * 6.57779 * 10 9 7 25 25 H 1.08995 * 109.49976 * 174.58927 * 11 10 9 26 26 H 1.08997 * 109.49691 * 294.68444 * 11 10 9 27 27 H 1.09000 * 109.46369 * 178.61551 * 12 11 10 28 28 H 1.09001 * 109.45634 * 58.65570 * 12 11 10 29 29 H 1.08994 * 110.99033 * 86.01023 * 17 15 13 30 30 H 1.08999 * 110.98555 * 322.18937 * 17 15 13 31 31 H 1.08998 * 110.70280 * 277.27132 * 18 17 15 32 32 H 1.08992 * 110.70997 * 154.03407 * 18 17 15 33 33 H 1.09000 * 109.88797 * 97.12281 * 19 18 17 34 34 H 1.09001 * 109.88870 * 218.31330 * 19 18 17 35 35 H 1.00895 * 111.00178 * 236.74106 * 20 19 18 36 36 H 1.08995 * 109.58591 * 113.84681 * 21 9 7 37 37 H 1.08998 * 109.57997 * 353.42237 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4118 2.0960 -1.3965 5 1 1.4933 2.6263 0.7843 6 1 3.5882 1.4168 0.6123 7 6 2.0103 -1.2022 -0.0005 8 1 3.0527 -1.2240 0.2809 9 7 1.3731 -2.3605 -0.3576 10 6 0.2348 -2.3331 -1.2863 11 6 0.5145 -3.3037 -2.4380 12 6 0.8272 -4.6890 -1.8677 13 6 2.0771 -4.6103 -0.9881 14 1 2.9156 -4.2416 -1.5787 15 6 2.4077 -6.0019 -0.4449 16 1 1.5825 -6.3785 0.1595 17 6 3.7135 -5.9596 0.3876 18 6 4.1932 -7.4319 0.2931 19 6 3.7819 -7.8405 -1.1371 20 7 2.6984 -6.9325 -1.5563 21 6 1.8151 -3.6545 0.1801 22 1 -0.4850 0.8401 -0.0004 23 1 -0.6711 -2.6384 -0.7629 24 1 0.1093 -1.3246 -1.6806 25 1 -0.3619 -3.3651 -3.0830 26 1 1.3674 -2.9470 -3.0153 27 1 1.0025 -5.3875 -2.6859 28 1 -0.0163 -5.0345 -1.2700 29 1 3.5086 -5.6812 1.4213 30 1 4.4406 -5.2826 -0.0608 31 1 3.6845 -8.0511 1.0320 32 1 5.2744 -7.4937 0.4157 33 1 4.6326 -7.7386 -1.8109 34 1 3.4247 -8.8703 -1.1403 35 1 1.8736 -7.4508 -1.8190 36 1 1.0379 -4.0676 0.8231 37 1 2.7321 -3.5179 0.7532 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037918025.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:20 Heat of formation + Delta-G solvation = -11.189979 kcal Electronic energy + Delta-G solvation = -16182.556551 eV Core-core repulsion = 13765.532251 eV Total energy + Delta-G solvation = -2417.024300 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.23414 -38.28224 -34.99464 -32.41413 -32.29795 -31.00559 -28.23891 -27.14939 -23.85325 -23.79290 -21.73147 -21.22832 -20.43898 -18.66999 -17.59942 -16.85536 -16.31287 -15.66905 -15.36259 -14.96715 -14.57410 -14.32989 -14.11329 -13.84934 -13.62348 -13.04642 -12.96981 -12.76481 -12.68458 -12.24755 -12.17151 -12.04145 -11.94341 -11.80399 -11.61627 -11.46018 -11.05614 -10.85668 -10.53470 -9.28461 -8.66440 -7.87007 -5.32595 1.45495 1.47352 1.56516 2.50678 3.23604 3.29119 3.67753 3.83705 3.86385 4.17455 4.18656 4.29539 4.31567 4.42299 4.64574 4.66690 4.72731 4.79108 4.91311 4.94372 5.00217 5.03604 5.08593 5.12754 5.21997 5.36250 5.38949 5.43023 5.52471 5.57799 5.67389 5.79826 6.05493 6.39447 6.58507 7.15014 7.87226 8.39398 9.19089 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.040838 B = 0.007215 C = 0.006490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.472637 B = 3879.732617 C = 4313.111652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.967 3.033 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.263 4.263 8 H 0.064 0.936 9 N -0.611 5.611 10 C 0.176 3.824 11 C -0.133 4.133 12 C -0.092 4.092 13 C -0.073 4.073 14 H 0.051 0.949 15 C 0.091 3.909 16 H 0.052 0.948 17 C -0.128 4.128 18 C -0.137 4.137 19 C 0.048 3.952 20 N -0.690 5.690 21 C 0.153 3.847 22 H 0.250 0.750 23 H -0.006 1.006 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.344 0.656 36 H 0.009 0.991 37 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.480 -15.169 -1.922 16.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.247 4.247 3 Si 0.795 3.205 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.192 1.192 7 C -0.394 4.394 8 H 0.082 0.918 9 N -0.334 5.334 10 C 0.050 3.950 11 C -0.172 4.172 12 C -0.129 4.129 13 C -0.093 4.093 14 H 0.070 0.930 15 C -0.019 4.019 16 H 0.070 0.930 17 C -0.166 4.166 18 C -0.175 4.175 19 C -0.081 4.081 20 N -0.320 5.320 21 C 0.027 3.973 22 H 0.059 0.941 23 H 0.013 0.987 24 H 0.068 0.932 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.161 0.839 36 H 0.027 0.973 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.810 -14.606 -2.268 15.882 hybrid contribution -0.424 0.733 0.729 1.118 sum 5.386 -13.873 -1.538 14.961 Atomic orbital electron populations 1.70204 1.06714 1.25822 1.55445 1.25803 0.96054 1.01519 1.01297 0.85254 0.78250 0.79548 0.77436 1.21290 1.21946 1.19213 1.19529 0.92951 0.86285 1.40594 0.91814 1.44305 1.36418 1.02232 1.50481 1.20599 0.87760 0.97597 0.89040 1.22028 1.00396 0.96700 0.98032 1.21315 0.96682 0.95985 0.98951 1.21396 0.97533 0.93764 0.96641 0.93030 1.22222 0.96822 0.92186 0.90671 0.93039 1.22734 0.96476 0.97563 0.99856 1.22788 1.02268 0.95213 0.97221 1.22617 0.95030 0.95263 0.95210 1.61624 1.11944 1.20163 1.38249 1.21019 0.96634 0.85748 0.93883 0.94105 0.98747 0.93243 0.91512 0.93697 0.90618 0.93266 0.90883 0.92019 0.90616 0.89864 0.91226 0.91422 0.83904 0.97345 0.93238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.11 11.22 21.65 0.24 -56.87 16 2 C -0.05 -2.97 4.90 84.86 0.42 -2.56 16 3 Si 0.97 46.13 29.59 68.60 2.03 48.16 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.26 -15.12 9.58 84.04 0.81 -14.31 16 8 H 0.06 3.58 7.89 -2.91 -0.02 3.56 16 9 N -0.61 -32.30 2.99 -699.09 -2.09 -34.40 16 10 C 0.18 8.96 5.31 86.36 0.46 9.42 16 11 C -0.13 -5.32 6.08 30.67 0.19 -5.14 16 12 C -0.09 -3.14 5.05 30.62 0.15 -2.98 16 13 C -0.07 -2.57 2.08 -10.72 -0.02 -2.59 16 14 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 15 C 0.09 2.51 2.79 45.39 0.13 2.63 16 16 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 17 C -0.13 -3.25 5.58 31.98 0.18 -3.08 16 18 C -0.14 -2.59 6.94 31.78 0.22 -2.37 16 19 C 0.05 0.91 7.58 86.65 0.66 1.57 16 20 N -0.69 -16.36 6.39 -482.42 -3.08 -19.44 16 21 C 0.15 6.63 5.51 86.36 0.48 7.10 16 22 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 23 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 24 H 0.05 2.84 6.06 -2.38 -0.01 2.82 16 25 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 26 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.08 2.25 7.66 -2.39 -0.02 2.24 16 28 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.74 8.06 -2.39 -0.02 1.73 16 31 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.34 7.05 8.91 -89.70 -0.80 6.25 16 36 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.05 2.11 7.36 -2.39 -0.02 2.10 16 Total: -1.00 -64.59 284.87 0.98 -63.61 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: 0.23 Total: 11.24 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: 3.66 Total: -12.30 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -4.93 Total: -110.71 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -64.59 0.98 -63.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037918025.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.420 kcal (2) G-P(sol) polarization free energy of solvation -64.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds