Wall clock time and date at job start Mon Mar 30 2020 03:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.47217 * 179.97438 * 10 9 7 12 12 C 1.46954 * 110.99834 * 293.79708 * 11 10 9 13 13 C 1.53048 * 109.36310 * 176.81011 * 12 11 10 14 14 N 1.46962 * 109.36367 * 58.40637 * 13 12 11 15 15 C 1.46902 * 111.00149 * 176.81530 * 14 13 12 16 16 C 1.53004 * 117.49965 * 12.53826 * 15 14 13 17 17 C 1.53002 * 117.49430 * 303.88097 * 15 14 13 18 18 C 1.46959 * 110.87717 * 300.67887 * 14 13 12 19 19 C 1.46954 * 110.99639 * 170.00188 * 11 10 9 20 20 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 21 21 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 22 22 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 23 23 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 24 24 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 25 25 H 1.08995 * 109.48979 * 296.77939 * 12 11 10 26 26 H 1.08999 * 109.48848 * 56.84887 * 12 11 10 27 27 H 1.08997 * 109.49255 * 298.44045 * 13 12 11 28 28 H 1.08995 * 109.49445 * 178.37027 * 13 12 11 29 29 H 1.08994 * 115.55141 * 158.21845 * 15 14 13 30 30 H 1.09006 * 117.49420 * 0.02562 * 16 15 14 31 31 H 1.08997 * 117.49628 * 145.01970 * 16 15 14 32 32 H 1.08993 * 117.49984 * 214.97992 * 17 15 14 33 33 H 1.09003 * 117.49892 * 359.97438 * 17 15 14 34 34 H 1.09003 * 109.49028 * 299.35263 * 18 14 13 35 35 H 1.09003 * 109.50404 * 179.30128 * 18 14 13 36 36 H 1.09001 * 109.49109 * 303.15021 * 19 11 10 37 37 H 1.08999 * 109.49206 * 63.20098 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 7 1.5107 -4.9343 0.0228 12 6 0.7684 -5.1076 1.2792 13 6 -0.0442 -6.4029 1.2139 14 7 0.8625 -7.5357 0.9807 15 6 0.1280 -8.8079 0.9868 16 6 -1.3995 -8.7421 0.9268 17 6 -0.7007 -9.1391 2.2296 18 6 1.6049 -7.3623 -0.2757 19 6 2.4174 -6.0670 -0.2104 20 1 -0.4850 0.8401 -0.0041 21 1 0.6241 -2.5528 0.9015 22 1 0.6247 -2.5609 -0.8785 23 1 2.8719 -3.6083 -0.8736 24 1 2.8719 -3.6004 0.9064 25 1 1.4699 -5.1600 2.1118 26 1 0.0950 -4.2628 1.4232 27 1 -0.7644 -6.3397 0.3982 28 1 -0.5730 -6.5484 2.1558 29 1 0.6167 -9.6354 0.4726 30 1 -1.8593 -7.7547 0.8823 31 1 -1.9156 -9.5264 0.3732 32 1 -0.7576 -10.1845 2.5326 33 1 -0.7005 -8.4132 3.0428 34 1 0.9034 -7.3099 -1.1084 35 1 2.2783 -8.2072 -0.4201 36 1 2.9462 -5.9216 -1.1524 37 1 3.1379 -6.1300 0.6051 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042490284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:22 Heat of formation + Delta-G solvation = 13.863482 kcal Electronic energy + Delta-G solvation = -15626.608971 eV Core-core repulsion = 13210.671071 eV Total energy + Delta-G solvation = -2415.937900 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.69441 -38.27282 -35.58124 -34.23568 -31.92640 -31.39275 -27.74216 -25.45965 -24.85578 -23.30443 -22.30255 -21.79794 -20.33947 -18.64058 -17.66798 -16.62231 -16.46060 -16.07312 -15.77981 -15.50530 -15.17879 -14.80884 -14.25562 -14.23899 -13.43083 -13.27089 -13.02083 -12.81486 -12.60159 -12.47161 -12.22066 -12.01641 -11.97492 -11.85768 -11.59138 -11.29162 -11.22016 -11.09131 -10.54306 -9.27391 -9.10257 -8.20486 -6.32020 1.40273 1.42017 1.53023 2.40154 2.66235 3.03059 3.12879 3.13774 3.79062 3.93935 4.02492 4.07486 4.12714 4.24441 4.33228 4.43758 4.49504 4.59453 4.67201 4.76650 4.81074 4.85565 4.90645 5.00368 5.02898 5.10338 5.11117 5.25776 5.44083 5.63971 5.76178 5.96419 6.02687 6.16347 6.28342 6.32055 6.84824 7.37204 8.91787 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.057194 B = 0.005156 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 489.447741 B = 5428.802016 C = 5731.645305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.263 1.263 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.037 3.963 10 C 0.080 3.920 11 N -0.552 5.552 12 C 0.059 3.941 13 C 0.067 3.933 14 N -0.518 5.518 15 C 0.013 3.987 16 C -0.222 4.222 17 C -0.166 4.166 18 C 0.066 3.934 19 C 0.054 3.946 20 H 0.264 0.736 21 H -0.007 1.007 22 H -0.009 1.009 23 H 0.066 0.934 24 H 0.018 0.982 25 H 0.031 0.969 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.086 0.914 29 H 0.136 0.864 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.037 0.963 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.106 -17.925 1.796 18.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.000 4.000 10 C -0.047 4.047 11 N -0.277 5.277 12 C -0.069 4.069 13 C -0.061 4.061 14 N -0.241 5.241 15 C -0.096 4.096 16 C -0.261 4.261 17 C -0.203 4.203 18 C -0.061 4.061 19 C -0.074 4.074 20 H 0.073 0.927 21 H 0.012 0.988 22 H 0.010 0.990 23 H 0.085 0.915 24 H 0.036 0.964 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.104 0.896 29 H 0.154 0.846 30 H 0.104 0.896 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.105 0.895 34 H 0.055 0.945 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.994 -17.811 1.794 17.928 hybrid contribution 0.036 1.256 0.044 1.257 sum 1.030 -16.555 1.839 16.689 Atomic orbital electron populations 1.70114 1.07866 1.27799 1.51429 1.25968 0.95738 1.03336 0.94541 0.85418 0.78611 0.78261 0.78567 1.19651 1.20688 1.18736 1.21625 0.93533 0.92263 1.50980 0.92167 1.18911 0.94188 0.91972 0.94963 1.21966 0.95379 0.88311 0.99083 1.62192 1.28398 1.02579 1.34567 1.22103 0.97142 0.97405 0.90291 1.22133 0.93879 0.89048 1.01027 1.62065 1.26410 1.01163 1.34421 1.22808 0.90310 0.93238 1.03256 1.23570 0.96583 1.03369 1.02569 1.23124 1.02707 1.03039 0.91471 1.22156 0.96908 0.97296 0.89784 1.22247 0.94058 0.89852 1.01246 0.92739 0.98831 0.99036 0.91520 0.96353 0.95117 0.91939 0.94364 0.89576 0.84621 0.89568 0.87414 0.86536 0.89512 0.94473 0.87778 0.89463 0.94682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.68 13.29 21.45 0.28 -57.40 16 2 C 0.00 0.12 5.46 84.66 0.46 0.59 16 3 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.55 -31.75 9.11 25.60 0.23 -31.52 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.04 2.04 4.91 29.85 0.15 2.18 16 10 C 0.08 3.53 4.90 86.30 0.42 3.95 16 11 N -0.55 -21.03 4.71 -895.73 -4.22 -25.25 16 12 C 0.06 2.15 5.41 86.31 0.47 2.62 16 13 C 0.07 1.98 4.29 86.31 0.37 2.35 16 14 N -0.52 -13.34 4.93 -870.45 -4.29 -17.63 16 15 C 0.01 0.26 6.11 44.92 0.27 0.53 16 16 C -0.22 -4.23 9.58 30.62 0.29 -3.93 16 17 C -0.17 -2.94 9.95 30.62 0.30 -2.64 16 18 C 0.07 1.64 5.59 86.31 0.48 2.13 16 19 C 0.05 1.61 5.61 86.31 0.48 2.09 16 20 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 21 H -0.01 -0.39 6.49 -2.39 -0.02 -0.40 16 22 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 23 H 0.07 2.83 8.03 -2.39 -0.02 2.81 16 24 H 0.02 0.81 8.12 -2.39 -0.02 0.79 16 25 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 26 H 0.06 2.59 6.34 -2.39 -0.02 2.58 16 27 H 0.04 1.20 6.95 -2.39 -0.02 1.18 16 28 H 0.09 2.31 6.62 -2.39 -0.02 2.29 16 29 H 0.14 2.19 8.07 -2.39 -0.02 2.17 16 30 H 0.09 1.92 5.94 -2.38 -0.01 1.91 16 31 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.09 1.72 7.26 -2.39 -0.02 1.70 16 34 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.10 1.99 8.13 -2.39 -0.02 1.97 16 36 H 0.09 2.39 8.07 -2.39 -0.02 2.37 16 37 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -65.23 289.62 -1.24 -66.47 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 1.02 Total: 8.72 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 3.94 Total: -21.66 kcal Atomic # 7 Polarization: -92.05 SS G_CDS: -8.23 Total: -100.28 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -65.23 -1.24 -66.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042490284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.331 kcal (2) G-P(sol) polarization free energy of solvation -65.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.468 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds