Wall clock time and date at job start Mon Mar 30 2020 03:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99889 * 2 1 4 4 H 1.48494 * 109.46944 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46747 * 300.00166 * 3 2 1 6 6 H 1.48496 * 109.47043 * 59.99542 * 3 2 1 7 7 C 1.37875 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00115 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46818 * 185.14940 * 9 7 2 11 11 C 1.46891 * 111.00190 * 290.97786 * 10 9 7 12 12 C 1.52998 * 117.49925 * 0.78310 * 11 10 9 13 13 C 1.53001 * 117.50070 * 292.11962 * 11 10 9 14 14 C 1.46902 * 111.00150 * 54.93623 * 10 9 7 15 15 H 1.08994 * 110.01336 * 295.98124 * 14 10 9 16 16 C 1.53877 * 110.03376 * 174.58982 * 14 10 9 17 17 C 1.54263 * 106.59807 * 240.71512 * 16 14 10 18 18 C 1.54886 * 104.31437 * 336.32459 * 17 16 14 19 19 C 1.54272 * 110.03196 * 57.42285 * 14 10 9 20 20 H 1.08995 * 110.48818 * 24.08771 * 19 14 10 21 21 N 1.46904 * 110.48410 * 261.57159 * 19 14 10 22 22 H 0.96997 * 120.00377 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47191 * 65.15031 * 9 7 2 24 24 H 1.08997 * 109.46809 * 305.14734 * 9 7 2 25 25 H 1.09000 * 115.55415 * 146.44594 * 11 10 9 26 26 H 1.09002 * 117.49693 * 359.97438 * 12 11 10 27 27 H 1.08999 * 117.50247 * 145.01962 * 12 11 10 28 28 H 1.08998 * 117.49876 * 214.97898 * 13 11 10 29 29 H 1.09001 * 117.49674 * 359.97438 * 13 11 10 30 30 H 1.08992 * 110.03449 * 121.42382 * 16 14 10 31 31 H 1.09004 * 110.06886 * 0.02562 * 16 14 10 32 32 H 1.09000 * 110.48595 * 95.07023 * 17 16 14 33 33 H 1.09001 * 110.48268 * 217.57586 * 17 16 14 34 34 H 1.08997 * 110.75834 * 156.32546 * 18 17 16 35 35 H 1.09006 * 110.75039 * 279.69371 * 18 17 16 36 36 H 1.00897 * 110.99639 * 179.97438 * 21 19 14 37 37 H 1.00898 * 110.99705 * 303.95269 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2009 -3.6128 0.1255 11 6 3.0138 -3.7503 -1.0902 12 6 2.7659 -2.7516 -2.2225 13 6 2.3038 -4.2038 -2.3674 14 6 3.0515 -3.4488 1.3119 15 1 3.6696 -2.5572 1.2073 16 6 3.9428 -4.6894 1.4971 17 6 3.5788 -5.2925 2.8696 18 6 2.9826 -4.1041 3.6641 19 6 2.1770 -3.3413 2.5783 20 1 1.2094 -3.8157 2.4151 21 7 2.0003 -1.9346 2.9631 22 1 -0.4850 0.8400 -0.0004 23 1 0.6958 -2.5981 -0.9321 24 1 0.5568 -2.5178 0.8406 25 1 4.0374 -4.0914 -0.9353 26 1 1.9993 -1.9929 -2.0655 27 1 3.6263 -2.4361 -2.8127 28 1 2.8604 -4.8430 -3.0528 29 1 1.2335 -4.4006 -2.3054 30 1 4.9934 -4.3998 1.4832 31 1 3.7450 -5.4135 0.7067 32 1 2.8384 -6.0841 2.7542 33 1 4.4704 -5.6748 3.3667 34 1 2.3253 -4.4606 4.4571 35 1 3.7746 -3.4753 4.0708 36 1 1.4288 -1.8553 3.7909 37 1 2.8919 -1.4809 3.0941 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042548396.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:22 Heat of formation + Delta-G solvation = 34.827205 kcal Electronic energy + Delta-G solvation = -16674.304046 eV Core-core repulsion = 14259.275201 eV Total energy + Delta-G solvation = -2415.028845 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.91075 -36.57623 -32.91429 -32.00426 -31.49924 -27.66161 -25.91984 -24.96108 -22.56448 -21.35958 -20.32478 -19.62205 -18.30314 -16.27122 -16.04911 -15.27984 -14.55734 -14.41900 -14.04130 -13.63141 -13.09703 -12.61338 -12.29296 -11.90204 -11.66288 -11.22889 -11.05514 -10.87414 -10.75821 -10.59149 -10.47791 -10.33355 -10.15622 -9.93417 -9.68103 -9.58303 -9.33373 -9.03988 -8.15980 -7.62109 -6.89839 -5.77067 -3.76820 3.38833 3.47185 3.49324 4.60095 4.68412 4.99540 5.02839 5.14844 5.37800 5.55795 5.63327 5.80353 5.84672 5.90436 5.98147 6.00333 6.04775 6.15584 6.19483 6.25428 6.36485 6.42237 6.55463 6.65182 6.68730 6.89484 6.99610 7.40279 7.47783 7.82355 8.00795 8.14302 8.24897 8.28743 8.50315 8.56126 9.24378 9.83034 11.30010 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.012338 C = 0.009217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.074444 B = 2268.912403 C = 3037.239498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.070 3.930 3 Si 0.879 3.121 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.496 4.496 8 H 0.049 0.951 9 C 0.187 3.813 10 N -0.506 5.506 11 C 0.032 3.968 12 C -0.199 4.199 13 C -0.191 4.191 14 C 0.100 3.900 15 H 0.054 0.946 16 C -0.124 4.124 17 C -0.114 4.114 18 C -0.165 4.165 19 C 0.110 3.890 20 H 0.087 0.913 21 N -0.809 5.809 22 H 0.255 0.745 23 H 0.020 0.980 24 H 0.046 0.954 25 H 0.091 0.909 26 H 0.134 0.866 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.326 0.674 37 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.336 -7.766 4.010 10.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.708 3.292 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.536 4.536 8 H 0.067 0.933 9 C 0.062 3.938 10 N -0.229 5.229 11 C -0.078 4.078 12 C -0.238 4.238 13 C -0.229 4.229 14 C -0.009 4.009 15 H 0.072 0.928 16 C -0.163 4.163 17 C -0.153 4.153 18 C -0.205 4.205 19 C -0.003 4.003 20 H 0.105 0.895 21 N -0.335 5.335 22 H 0.064 0.936 23 H 0.038 0.962 24 H 0.064 0.936 25 H 0.109 0.891 26 H 0.152 0.848 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.138 0.862 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.532 -7.975 3.371 10.275 hybrid contribution 1.516 1.527 0.763 2.283 sum 7.047 -6.448 4.134 10.408 Atomic orbital electron populations 1.69939 1.05790 1.25758 1.51976 1.24738 0.94418 0.98162 0.95701 0.86772 0.80054 0.85265 0.77082 1.20374 1.21770 1.21474 1.21384 0.92454 0.91355 1.48375 0.93300 1.19852 0.91040 0.85465 0.97427 1.62518 1.15715 1.45270 0.99352 1.22266 0.95617 1.03081 0.86863 1.23750 1.04290 0.93360 1.02368 1.23021 1.00688 0.98621 1.00564 1.21977 0.93136 0.95230 0.90562 0.92795 1.22319 0.98342 0.98396 0.97234 1.22177 0.99723 0.97528 0.95852 1.23479 0.99814 0.98372 0.98845 1.22231 0.98210 0.87796 0.92049 0.89515 1.58571 1.20392 1.13379 1.41151 0.93563 0.96249 0.93600 0.89089 0.84829 0.91199 0.90529 0.89396 0.93006 0.91038 0.91792 0.92854 0.92341 0.92295 0.86216 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.07 1.94 5.46 -17.82 -0.10 1.84 16 3 Si 0.88 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 7 C -0.50 -12.94 4.80 -34.44 -0.17 -13.10 16 8 H 0.05 1.31 6.30 -52.49 -0.33 0.98 16 9 C 0.19 4.67 4.12 -4.97 -0.02 4.65 16 10 N -0.51 -10.66 4.67 -218.82 -1.02 -11.68 16 11 C 0.03 0.62 5.07 -67.72 -0.34 0.28 16 12 C -0.20 -4.08 8.67 -26.69 -0.23 -4.31 16 13 C -0.19 -3.50 10.07 -26.69 -0.27 -3.77 16 14 C 0.10 1.89 1.90 -66.59 -0.13 1.76 16 15 H 0.05 1.16 6.24 -51.93 -0.32 0.83 16 16 C -0.12 -1.94 5.63 -25.61 -0.14 -2.08 16 17 C -0.11 -1.56 6.82 -25.08 -0.17 -1.73 16 18 C -0.16 -2.32 6.59 -24.55 -0.16 -2.48 16 19 C 0.11 1.94 2.63 -65.86 -0.17 1.76 16 20 H 0.09 1.71 7.53 -51.93 -0.39 1.32 16 21 N -0.81 -14.95 7.98 -3.10 -0.02 -14.97 16 22 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.02 0.53 6.35 -51.93 -0.33 0.20 16 24 H 0.05 1.27 6.74 -51.93 -0.35 0.92 16 25 H 0.09 1.65 6.93 -51.93 -0.36 1.29 16 26 H 0.13 3.23 4.88 -51.93 -0.25 2.98 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.09 1.70 7.99 -51.93 -0.42 1.28 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 1.14 7.06 -51.93 -0.37 0.77 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.80 8.13 -51.93 -0.42 0.37 16 36 H 0.33 5.36 9.08 -39.29 -0.36 5.00 16 37 H 0.33 5.84 8.86 -39.29 -0.35 5.49 16 LS Contribution 281.78 15.07 4.25 4.25 Total: -1.00 -28.11 281.78 -8.91 -37.01 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -5.92 Total: 11.27 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -1.90 Total: -17.18 kcal Atomic # 7 Polarization: -51.68 SS G_CDS: -0.31 Total: -51.99 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.11 -8.91 -37.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548396.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.839 kcal (2) G-P(sol) polarization free energy of solvation -28.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds