Wall clock time and date at job start Mon Mar 30 2020 03:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99889 * 2 1 4 4 H 1.48494 * 109.46944 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46747 * 300.00166 * 3 2 1 6 6 H 1.48496 * 109.47043 * 59.99542 * 3 2 1 7 7 C 1.37875 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00115 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.46818 * 185.14940 * 9 7 2 11 11 C 1.46891 * 111.00190 * 290.97786 * 10 9 7 12 12 C 1.52998 * 117.49925 * 0.78310 * 11 10 9 13 13 C 1.53001 * 117.50070 * 292.11962 * 11 10 9 14 14 C 1.46902 * 111.00150 * 54.93623 * 10 9 7 15 15 H 1.08994 * 110.01336 * 295.98124 * 14 10 9 16 16 C 1.53877 * 110.03376 * 174.58982 * 14 10 9 17 17 C 1.54263 * 106.59807 * 240.71512 * 16 14 10 18 18 C 1.54886 * 104.31437 * 336.32459 * 17 16 14 19 19 C 1.54272 * 110.03196 * 57.42285 * 14 10 9 20 20 H 1.08995 * 110.48818 * 24.08771 * 19 14 10 21 21 N 1.46904 * 110.48410 * 261.57159 * 19 14 10 22 22 H 0.96997 * 120.00377 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47191 * 65.15031 * 9 7 2 24 24 H 1.08997 * 109.46809 * 305.14734 * 9 7 2 25 25 H 1.09000 * 115.55415 * 146.44594 * 11 10 9 26 26 H 1.09002 * 117.49693 * 359.97438 * 12 11 10 27 27 H 1.08999 * 117.50247 * 145.01962 * 12 11 10 28 28 H 1.08998 * 117.49876 * 214.97898 * 13 11 10 29 29 H 1.09001 * 117.49674 * 359.97438 * 13 11 10 30 30 H 1.08992 * 110.03449 * 121.42382 * 16 14 10 31 31 H 1.09004 * 110.06886 * 0.02562 * 16 14 10 32 32 H 1.09000 * 110.48595 * 95.07023 * 17 16 14 33 33 H 1.09001 * 110.48268 * 217.57586 * 17 16 14 34 34 H 1.08997 * 110.75834 * 156.32546 * 18 17 16 35 35 H 1.09006 * 110.75039 * 279.69371 * 18 17 16 36 36 H 1.00897 * 110.99639 * 179.97438 * 21 19 14 37 37 H 1.00898 * 110.99705 * 303.95269 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2009 -3.6128 0.1255 11 6 3.0138 -3.7503 -1.0902 12 6 2.7659 -2.7516 -2.2225 13 6 2.3038 -4.2038 -2.3674 14 6 3.0515 -3.4488 1.3119 15 1 3.6696 -2.5572 1.2073 16 6 3.9428 -4.6894 1.4971 17 6 3.5788 -5.2925 2.8696 18 6 2.9826 -4.1041 3.6641 19 6 2.1770 -3.3413 2.5783 20 1 1.2094 -3.8157 2.4151 21 7 2.0003 -1.9346 2.9631 22 1 -0.4850 0.8400 -0.0004 23 1 0.6958 -2.5981 -0.9321 24 1 0.5568 -2.5178 0.8406 25 1 4.0374 -4.0914 -0.9353 26 1 1.9993 -1.9929 -2.0655 27 1 3.6263 -2.4361 -2.8127 28 1 2.8604 -4.8430 -3.0528 29 1 1.2335 -4.4006 -2.3054 30 1 4.9934 -4.3998 1.4832 31 1 3.7450 -5.4135 0.7067 32 1 2.8384 -6.0841 2.7542 33 1 4.4704 -5.6748 3.3667 34 1 2.3253 -4.4606 4.4571 35 1 3.7746 -3.4753 4.0708 36 1 1.4288 -1.8553 3.7909 37 1 2.8919 -1.4809 3.0941 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042548396.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:21 Heat of formation + Delta-G solvation = 15.364965 kcal Electronic energy + Delta-G solvation = -16675.147992 eV Core-core repulsion = 14259.275201 eV Total energy + Delta-G solvation = -2415.872791 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.44592 -38.05209 -34.85105 -33.47138 -33.19845 -29.34053 -27.53591 -26.47283 -24.45263 -22.95407 -21.69392 -21.04031 -19.94905 -18.08842 -17.82046 -16.79272 -16.31954 -16.03703 -15.55904 -15.05497 -14.61494 -14.32002 -13.90660 -13.54141 -13.08739 -12.95852 -12.76224 -12.63102 -12.38792 -12.14509 -11.95418 -11.81247 -11.80078 -11.49790 -11.45157 -11.27522 -10.90086 -10.86103 -10.32884 -9.02528 -8.68016 -7.88590 -5.95202 1.40333 1.43432 1.51490 2.53342 3.09067 3.38381 3.56081 3.74136 3.86066 4.16590 4.24423 4.29236 4.30956 4.48748 4.63674 4.66056 4.76497 4.80644 4.88659 4.94579 5.00327 5.15668 5.22620 5.28806 5.34288 5.48812 5.50762 5.51186 5.63833 5.72240 6.00569 6.31064 6.48309 6.64618 6.80295 6.91154 7.14212 7.67397 9.15856 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.022794 B = 0.012338 C = 0.009217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.074444 B = 2268.912403 C = 3037.239498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.021 3.979 3 Si 0.937 3.063 4 H -0.272 1.272 5 H -0.293 1.293 6 H -0.288 1.288 7 C -0.472 4.472 8 H 0.043 0.957 9 C 0.210 3.790 10 N -0.509 5.509 11 C 0.024 3.976 12 C -0.214 4.214 13 C -0.169 4.169 14 C 0.097 3.903 15 H 0.028 0.972 16 C -0.117 4.117 17 C -0.108 4.108 18 C -0.151 4.151 19 C 0.109 3.891 20 H 0.060 0.940 21 N -0.832 5.832 22 H 0.252 0.748 23 H -0.011 1.011 24 H 0.015 0.985 25 H 0.115 0.885 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.114 0.886 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.335 0.665 37 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.535 -8.987 4.529 13.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.176 4.176 3 Si 0.765 3.235 4 H -0.196 1.196 5 H -0.220 1.220 6 H -0.215 1.215 7 C -0.512 4.512 8 H 0.061 0.939 9 C 0.084 3.916 10 N -0.231 5.231 11 C -0.085 4.085 12 C -0.252 4.252 13 C -0.207 4.207 14 C -0.012 4.012 15 H 0.046 0.954 16 C -0.156 4.156 17 C -0.147 4.147 18 C -0.191 4.191 19 C -0.004 4.004 20 H 0.078 0.922 21 N -0.360 5.360 22 H 0.062 0.938 23 H 0.007 0.993 24 H 0.033 0.967 25 H 0.133 0.867 26 H 0.109 0.891 27 H 0.107 0.893 28 H 0.132 0.868 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.753 -9.212 3.896 12.655 hybrid contribution 0.821 1.871 0.570 2.121 sum 8.574 -7.341 4.466 12.139 Atomic orbital electron populations 1.70065 1.07212 1.26216 1.53895 1.25366 0.94995 1.01138 0.96061 0.85847 0.79168 0.81771 0.76690 1.19623 1.22002 1.21470 1.21377 0.91854 0.91702 1.46231 0.93909 1.19366 0.91196 0.86643 0.94371 1.62465 1.16431 1.43134 1.01089 1.22495 0.96720 1.03006 0.86319 1.23545 1.04086 0.93616 1.04002 1.23044 1.00226 0.97284 1.00170 1.22111 0.93081 0.96086 0.89970 0.95436 1.22253 0.98213 0.96529 0.98569 1.22171 1.00899 0.97069 0.94511 1.23332 0.99666 0.98146 0.97930 1.22152 0.97336 0.87722 0.93166 0.92199 1.58510 1.20982 1.14434 1.42077 0.93849 0.99332 0.96670 0.86691 0.89096 0.89316 0.86819 0.90939 0.91499 0.91090 0.91599 0.90121 0.90935 0.91241 0.85212 0.85242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 2 C 0.02 1.20 5.46 84.65 0.46 1.66 16 3 Si 0.94 45.12 29.54 68.60 2.03 47.14 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 7 C -0.47 -25.13 4.80 25.60 0.12 -25.01 16 8 H 0.04 2.32 6.30 -2.91 -0.02 2.30 16 9 C 0.21 10.87 4.12 85.56 0.35 11.23 16 10 N -0.51 -21.49 4.67 -846.22 -3.95 -25.44 16 11 C 0.02 0.92 5.07 44.92 0.23 1.15 16 12 C -0.21 -8.66 8.67 30.62 0.27 -8.40 16 13 C -0.17 -5.95 10.07 30.62 0.31 -5.64 16 14 C 0.10 3.56 1.90 45.64 0.09 3.65 16 15 H 0.03 1.17 6.24 -2.39 -0.01 1.15 16 16 C -0.12 -3.32 5.63 31.32 0.18 -3.14 16 17 C -0.11 -2.57 6.82 31.67 0.22 -2.35 16 18 C -0.15 -3.86 6.59 32.01 0.21 -3.64 16 19 C 0.11 3.79 2.63 46.11 0.12 3.91 16 20 H 0.06 2.41 7.53 -2.39 -0.02 2.39 16 21 N -0.83 -30.96 7.98 -163.72 -1.31 -32.26 16 22 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 23 H -0.01 -0.65 6.35 -2.39 -0.02 -0.67 16 24 H 0.02 0.88 6.74 -2.39 -0.02 0.86 16 25 H 0.12 3.84 6.93 -2.39 -0.02 3.82 16 26 H 0.09 4.53 4.88 -2.39 -0.01 4.52 16 27 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 28 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.07 2.78 7.99 -2.39 -0.02 2.76 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.07 2.04 7.06 -2.38 -0.02 2.02 16 32 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.07 1.66 8.13 -2.38 -0.02 1.64 16 36 H 0.34 11.08 9.08 -89.70 -0.81 10.27 16 37 H 0.33 11.74 8.86 -89.70 -0.79 10.94 16 Total: -1.00 -61.81 281.78 -0.94 -62.75 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -0.54 Total: 30.13 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 2.55 Total: -26.59 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -4.97 Total: -113.43 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -61.81 -0.94 -62.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548396.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.112 kcal (2) G-P(sol) polarization free energy of solvation -61.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds