Wall clock time and date at job start Mon Mar 30 2020 03:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00063 * 2 1 4 4 H 1.48498 * 109.47157 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47264 * 300.00364 * 3 2 1 6 6 H 1.48502 * 109.46892 * 60.00263 * 3 2 1 7 7 C 1.37877 * 119.99726 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99489 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00142 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47185 * 174.94700 * 9 7 2 11 11 C 1.46908 * 110.99689 * 58.26375 * 10 9 7 12 12 C 1.53001 * 117.49938 * 129.35616 * 11 10 9 13 13 C 1.52992 * 117.49902 * 60.69291 * 11 10 9 14 14 C 1.46897 * 111.00223 * 294.31194 * 10 9 7 15 15 H 1.09001 * 110.05842 * 50.42603 * 14 10 9 16 16 C 1.54261 * 110.03437 * 171.84992 * 14 10 9 17 17 C 1.55235 * 104.23154 * 142.89531 * 16 14 10 18 18 C 1.54887 * 102.58682 * 322.07947 * 17 16 14 19 19 C 1.53879 * 110.02965 * 289.01792 * 14 10 9 20 20 H 1.08999 * 110.03658 * 121.42944 * 19 14 10 21 21 N 1.46900 * 110.03165 * 359.97438 * 19 14 10 22 22 H 0.97008 * 120.00018 * 359.97438 * 1 2 3 23 23 H 1.08994 * 109.46768 * 54.94830 * 9 7 2 24 24 H 1.08998 * 109.47023 * 294.95160 * 9 7 2 25 25 H 1.09006 * 115.54502 * 275.01992 * 11 10 9 26 26 H 1.08997 * 117.49714 * 359.97438 * 12 11 10 27 27 H 1.08999 * 117.49773 * 145.01559 * 12 11 10 28 28 H 1.09007 * 117.49803 * 214.97677 * 13 11 10 29 29 H 1.08998 * 117.50151 * 359.97438 * 13 11 10 30 30 H 1.09010 * 110.48501 * 261.56985 * 16 14 10 31 31 H 1.08993 * 110.48850 * 24.21158 * 16 14 10 32 32 H 1.09010 * 110.89675 * 203.79190 * 17 16 14 33 33 H 1.08999 * 110.76934 * 80.31345 * 17 16 14 34 34 H 1.09002 * 110.48881 * 279.19040 * 18 17 16 35 35 H 1.09006 * 110.48458 * 156.67704 * 18 17 16 36 36 H 1.00901 * 111.00108 * 181.37948 * 21 19 14 37 37 H 1.00894 * 111.00235 * 305.34019 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2008 -3.6130 -0.1231 11 6 3.1782 -3.5945 0.9735 12 6 3.3894 -4.8937 1.7535 13 6 2.6415 -3.7251 2.4003 14 6 2.8740 -3.5896 -1.4286 15 1 3.2790 -2.5965 -1.6226 16 6 4.0060 -4.6372 -1.4583 17 6 3.9668 -5.2004 -2.9043 18 6 2.4484 -5.2529 -3.2052 19 6 1.8835 -3.9810 -2.5393 20 1 1.8080 -3.1779 -3.2724 21 7 0.5629 -4.2610 -1.9602 22 1 -0.4850 0.8401 0.0004 23 1 0.5579 -2.5184 -0.8415 24 1 0.6942 -2.5972 0.9314 25 1 4.0461 -2.9535 0.8189 26 1 2.8029 -5.7620 1.4533 27 1 4.3963 -5.1072 2.1124 28 1 3.1567 -3.1703 3.1845 29 1 1.5633 -3.8243 2.5254 30 1 4.9681 -4.1649 -1.2591 31 1 3.8118 -5.4293 -0.7353 32 1 4.4033 -6.1985 -2.9448 33 1 4.4745 -4.5274 -3.5952 34 1 2.0026 -6.1445 -2.7642 35 1 2.2716 -5.2310 -4.2806 36 1 -0.0930 -4.5412 -2.6740 37 1 0.6269 -4.9585 -1.2340 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042548402.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:26 Heat of formation + Delta-G solvation = 15.514337 kcal Electronic energy + Delta-G solvation = -16551.575941 eV Core-core repulsion = 14135.709627 eV Total energy + Delta-G solvation = -2415.866314 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.35325 -37.76157 -35.25545 -33.51095 -33.22501 -29.24337 -27.39105 -26.68615 -24.37456 -22.95052 -21.78160 -21.11516 -19.97968 -18.25286 -17.40950 -17.06456 -16.66709 -15.63648 -15.32354 -15.09554 -14.95999 -14.33580 -14.16331 -13.55407 -13.18522 -13.11487 -12.90585 -12.66943 -12.27466 -12.21679 -11.90777 -11.85540 -11.74208 -11.61062 -11.47953 -11.35150 -10.95164 -10.60688 -10.48449 -9.06945 -8.77115 -8.01522 -6.18228 1.33019 1.34502 1.44872 2.40947 3.11391 3.22074 3.34529 3.78683 3.85739 4.04407 4.23692 4.29950 4.33426 4.52061 4.62323 4.67793 4.73394 4.87695 4.89377 4.96009 5.02517 5.14916 5.18341 5.20914 5.30868 5.43544 5.45683 5.52865 5.55045 5.68023 6.09215 6.28176 6.48815 6.55172 6.91282 6.98836 7.10560 7.49428 8.98174 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.023891 B = 0.010449 C = 0.008965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.689255 B = 2678.939187 C = 3122.534156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.040 0.960 9 C 0.200 3.800 10 N -0.484 5.484 11 C 0.014 3.986 12 C -0.142 4.142 13 C -0.179 4.179 14 C 0.087 3.913 15 H 0.011 0.989 16 C -0.112 4.112 17 C -0.114 4.114 18 C -0.142 4.142 19 C 0.102 3.898 20 H 0.051 0.949 21 N -0.833 5.833 22 H 0.259 0.741 23 H 0.063 0.937 24 H -0.016 1.016 25 H 0.055 0.945 26 H 0.099 0.901 27 H 0.108 0.892 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.334 0.666 37 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.169 -11.937 -3.600 14.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.770 3.230 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.058 0.942 9 C 0.074 3.926 10 N -0.207 5.207 11 C -0.096 4.096 12 C -0.180 4.180 13 C -0.217 4.217 14 C -0.023 4.023 15 H 0.030 0.970 16 C -0.150 4.150 17 C -0.152 4.152 18 C -0.182 4.182 19 C -0.011 4.011 20 H 0.070 0.930 21 N -0.363 5.363 22 H 0.068 0.932 23 H 0.081 0.919 24 H 0.002 0.998 25 H 0.073 0.927 26 H 0.118 0.882 27 H 0.126 0.874 28 H 0.108 0.892 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.147 0.853 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 6.732 -11.490 -3.339 13.729 hybrid contribution 0.688 1.457 -0.212 1.625 sum 7.420 -10.033 -3.551 12.974 Atomic orbital electron populations 1.70087 1.07152 1.26944 1.52247 1.25677 0.95520 1.02085 0.95545 0.85727 0.78900 0.80692 0.77638 1.19734 1.20610 1.20626 1.22121 0.92589 0.93981 1.49346 0.94188 1.19665 0.91583 0.84821 0.96557 1.62228 1.14405 1.44263 0.99759 1.22059 0.96712 0.99918 0.90888 1.23106 1.01254 0.91816 1.01812 1.22822 0.99799 1.03473 0.95593 1.22195 0.93649 0.96443 0.89966 0.97049 1.22499 0.96371 0.97967 0.98171 1.22436 0.95859 1.01454 0.95429 1.23119 0.96702 0.97677 1.00701 1.21907 0.89090 0.96128 0.93933 0.93031 1.58687 1.08671 1.53170 1.15818 0.93178 0.91899 0.99838 0.92706 0.88223 0.87423 0.89219 0.90560 0.92692 0.90165 0.89639 0.91577 0.90998 0.90920 0.85339 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.88 13.29 21.45 0.28 -56.60 16 2 C 0.01 0.59 5.46 84.65 0.46 1.05 16 3 Si 0.94 45.99 29.54 68.60 2.03 48.02 16 4 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 7 C -0.54 -31.09 7.56 25.60 0.19 -30.90 16 8 H 0.04 2.32 6.45 -2.91 -0.02 2.30 16 9 C 0.20 10.62 4.43 85.56 0.38 11.00 16 10 N -0.48 -20.24 3.54 -846.21 -3.00 -23.23 16 11 C 0.01 0.53 2.95 44.91 0.13 0.67 16 12 C -0.14 -4.23 9.39 30.62 0.29 -3.94 16 13 C -0.18 -6.58 9.83 30.62 0.30 -6.27 16 14 C 0.09 3.33 2.54 45.64 0.12 3.44 16 15 H 0.01 0.53 6.78 -2.39 -0.02 0.51 16 16 C -0.11 -3.27 5.43 31.79 0.17 -3.10 16 17 C -0.11 -2.64 6.93 32.01 0.22 -2.42 16 18 C -0.14 -3.50 6.50 31.67 0.21 -3.30 16 19 C 0.10 3.48 3.77 45.64 0.17 3.65 16 20 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 21 N -0.83 -29.10 6.26 -165.67 -1.04 -30.13 16 22 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 23 H 0.06 3.60 5.81 -2.39 -0.01 3.58 16 24 H -0.02 -0.98 7.23 -2.39 -0.02 -0.99 16 25 H 0.06 2.33 7.59 -2.38 -0.02 2.31 16 26 H 0.10 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 28 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 29 H 0.08 3.06 7.57 -2.39 -0.02 3.04 16 30 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.08 2.26 6.69 -2.39 -0.02 2.24 16 32 H 0.09 1.59 8.14 -2.38 -0.02 1.58 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.65 8.03 -2.39 -0.02 1.63 16 35 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 36 H 0.33 9.88 9.06 -89.69 -0.81 9.07 16 37 H 0.35 11.89 8.18 -89.70 -0.73 11.15 16 Total: -1.00 -64.28 285.58 0.43 -63.84 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: -0.49 Total: 28.22 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: 2.64 Total: -30.11 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -3.75 Total: -109.96 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -64.28 0.43 -63.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548402.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.359 kcal (2) G-P(sol) polarization free energy of solvation -64.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds