Wall clock time and date at job start Mon Mar 30 2020 03:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 119.99817 * 2 1 4 4 H 1.48503 * 109.46749 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47007 * 299.99995 * 3 2 1 6 6 H 1.48504 * 109.46754 * 60.00274 * 3 2 1 7 7 C 1.37876 * 120.00042 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00084 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99922 * 0.02562 * 7 2 1 10 10 N 1.46899 * 109.46766 * 184.51164 * 9 7 2 11 11 C 1.46899 * 110.99911 * 198.59025 * 10 9 7 12 12 C 1.53001 * 109.47157 * 169.99934 * 11 10 9 13 13 N 1.46900 * 109.47345 * 180.02562 * 12 11 10 14 14 C 1.46898 * 110.99954 * 180.02562 * 13 12 11 15 15 C 1.53000 * 117.49546 * 223.62065 * 14 13 12 16 16 C 1.53003 * 60.00104 * 252.51307 * 15 14 13 17 17 C 1.46908 * 110.99964 * 74.64658 * 10 9 7 18 18 C 1.53002 * 117.49471 * 266.10259 * 17 10 9 19 19 C 1.52998 * 60.00092 * 252.51286 * 18 17 10 20 20 H 0.96995 * 120.00116 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.47392 * 64.51402 * 9 7 2 22 22 H 1.09000 * 109.46752 * 304.51038 * 9 7 2 23 23 H 1.08999 * 109.47515 * 290.00550 * 11 10 9 24 24 H 1.09000 * 109.46568 * 50.00926 * 11 10 9 25 25 H 1.08999 * 109.47410 * 300.00679 * 12 11 10 26 26 H 1.09000 * 109.46756 * 60.00474 * 12 11 10 27 27 H 1.00903 * 110.99402 * 303.95742 * 13 12 11 28 28 H 1.08993 * 115.55061 * 9.32959 * 14 13 12 29 29 H 1.09002 * 117.50183 * 359.97438 * 15 14 13 30 30 H 1.09000 * 117.49922 * 145.01998 * 15 14 13 31 31 H 1.09001 * 117.49323 * 252.51676 * 16 15 14 32 32 H 1.08995 * 117.52193 * 107.48305 * 16 15 14 33 33 H 1.08999 * 115.55316 * 51.80666 * 17 10 9 34 34 H 1.09008 * 117.49761 * 0.02562 * 18 17 10 35 35 H 1.09006 * 117.49603 * 145.01764 * 18 17 10 36 36 H 1.09008 * 117.49520 * 252.51568 * 19 18 17 37 37 H 1.08997 * 117.52324 * 107.48295 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2019 -3.6135 0.1101 11 6 1.5859 -4.8755 -0.3207 12 6 2.6625 -5.9570 -0.4315 13 7 2.0466 -7.2189 -0.8629 14 6 3.0527 -8.2828 -0.9798 15 6 2.9817 -9.1901 -2.2097 16 6 2.5720 -9.7284 -0.8374 17 6 2.7278 -3.7244 1.4774 18 6 4.0477 -3.0149 1.7862 19 6 4.0062 -4.5405 1.6785 20 1 -0.4850 0.8400 -0.0004 21 1 0.6868 -2.5930 -0.9273 22 1 0.5648 -2.5225 0.8471 23 1 0.8367 -5.1821 0.4093 24 1 1.1109 -4.7350 -1.2917 25 1 3.4117 -5.6505 -1.1615 26 1 3.1375 -6.0974 0.5395 27 1 1.3037 -7.4912 -0.2367 28 1 4.0409 -8.0403 -0.5893 29 1 2.1882 -8.9978 -2.9319 30 1 3.9235 -9.5445 -2.6287 31 1 3.2443 -10.4369 -0.3535 32 1 1.5094 -9.8899 -0.6565 33 1 1.9782 -3.7600 2.2679 34 1 4.5257 -2.4655 0.9750 35 1 4.1666 -2.5835 2.7802 36 1 4.0979 -5.1129 2.6017 37 1 4.4568 -4.9956 0.7965 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042548475.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:49 Heat of formation + Delta-G solvation = 61.302493 kcal Electronic energy + Delta-G solvation = -15398.095926 eV Core-core repulsion = 12984.215136 eV Total energy + Delta-G solvation = -2413.880791 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.34565 -37.40834 -34.10212 -33.30840 -31.88243 -28.06992 -25.51452 -22.48190 -22.25598 -22.01352 -21.43017 -21.03285 -19.42495 -16.43185 -16.09139 -15.59392 -14.96735 -14.75705 -14.51446 -14.18128 -13.33967 -13.00108 -12.78175 -12.29300 -12.00896 -11.60078 -11.46223 -11.15875 -11.02180 -10.93982 -10.69094 -10.65755 -10.44405 -10.33407 -9.98634 -9.55260 -9.25238 -9.15780 -8.38166 -8.15168 -7.29790 -5.97505 -3.97633 3.33665 3.40996 3.45869 3.76873 4.00176 4.45551 4.47946 4.85462 4.86700 4.92787 5.17582 5.37563 5.51905 5.53566 5.55548 5.58560 5.61854 5.66835 5.86547 6.02278 6.04855 6.06440 6.10164 6.30519 6.44446 6.48930 6.59499 6.82694 7.15973 7.25108 7.37482 7.42687 7.87788 8.13633 8.22410 8.57865 9.10588 9.66022 11.13414 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.042485 B = 0.005505 C = 0.005157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.902594 B = 5085.002840 C = 5428.584226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.052 3.948 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.495 4.495 8 H 0.066 0.934 9 C 0.196 3.804 10 N -0.510 5.510 11 C 0.063 3.937 12 C 0.056 3.944 13 N -0.662 5.662 14 C 0.022 3.978 15 C -0.172 4.172 16 C -0.198 4.198 17 C 0.033 3.967 18 C -0.150 4.150 19 C -0.195 4.195 20 H 0.259 0.741 21 H 0.027 0.973 22 H -0.004 1.004 23 H 0.019 0.981 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.046 0.954 27 H 0.339 0.661 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.852 -14.823 1.189 15.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.148 4.148 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.534 4.534 8 H 0.084 0.916 9 C 0.071 3.929 10 N -0.235 5.235 11 C -0.066 4.066 12 C -0.072 4.072 13 N -0.293 5.293 14 C -0.089 4.089 15 C -0.210 4.210 16 C -0.236 4.236 17 C -0.076 4.076 18 C -0.188 4.188 19 C -0.232 4.232 20 H 0.069 0.931 21 H 0.045 0.955 22 H 0.014 0.986 23 H 0.037 0.963 24 H 0.094 0.906 25 H 0.095 0.905 26 H 0.065 0.935 27 H 0.158 0.842 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.113 0.887 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.098 -14.405 0.207 15.644 hybrid contribution -0.242 0.619 1.456 1.600 sum 5.856 -13.786 1.663 15.070 Atomic orbital electron populations 1.69970 1.06043 1.26517 1.51730 1.24989 0.94827 0.99236 0.95754 0.86472 0.80121 0.83619 0.77405 1.19665 1.21122 1.21236 1.21212 0.93690 0.89598 1.48932 0.91620 1.19737 0.89649 0.87289 0.96185 1.61888 1.38949 1.03235 1.19441 1.21914 0.94459 0.90031 1.00214 1.22375 0.97545 0.87913 0.99400 1.60134 1.11458 1.02514 1.55225 1.22336 0.96235 0.87677 1.02616 1.23114 1.02976 1.03314 0.91585 1.23236 1.01892 0.96909 1.01543 1.22115 0.90053 1.03846 0.91607 1.22851 1.00878 0.93112 1.01950 1.23179 1.03232 0.94966 1.01855 0.93106 0.95452 0.98593 0.96274 0.90592 0.90515 0.93549 0.84221 0.88447 0.88350 0.89098 0.89019 0.88701 0.91091 0.88148 0.89828 0.90057 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.50 -13.92 8.72 -34.44 -0.30 -14.22 16 8 H 0.07 1.83 6.62 -52.49 -0.35 1.48 16 9 C 0.20 5.14 4.76 -4.97 -0.02 5.12 16 10 N -0.51 -10.98 4.57 -228.07 -1.04 -12.02 16 11 C 0.06 1.14 5.20 -3.82 -0.02 1.12 16 12 C 0.06 0.85 4.52 -3.82 -0.02 0.83 16 13 N -0.66 -8.82 6.75 -106.73 -0.72 -9.54 16 14 C 0.02 0.25 6.26 -67.71 -0.42 -0.17 16 15 C -0.17 -1.77 10.46 -26.73 -0.28 -2.05 16 16 C -0.20 -1.87 10.33 -26.73 -0.28 -2.15 16 17 C 0.03 0.64 4.55 -67.71 -0.31 0.33 16 18 C -0.15 -2.72 9.74 -26.73 -0.26 -2.98 16 19 C -0.19 -3.04 8.21 -26.73 -0.22 -3.26 16 20 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 21 H 0.03 0.76 7.76 -51.93 -0.40 0.36 16 22 H 0.00 -0.11 8.01 -51.93 -0.42 -0.52 16 23 H 0.02 0.34 8.12 -51.93 -0.42 -0.08 16 24 H 0.08 1.47 7.84 -51.93 -0.41 1.06 16 25 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 26 H 0.05 0.68 4.89 -51.93 -0.25 0.42 16 27 H 0.34 4.19 8.68 -39.29 -0.34 3.85 16 28 H 0.10 1.09 7.90 -51.93 -0.41 0.68 16 29 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.42 8.13 -51.93 -0.42 1.00 16 34 H 0.10 1.97 7.38 -51.92 -0.38 1.59 16 35 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 37 H 0.10 1.47 6.36 -51.93 -0.33 1.14 16 LS Contribution 300.65 15.07 4.53 4.53 Total: -1.00 -29.38 300.65 -9.97 -39.35 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -6.23 Total: 3.19 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: -2.23 Total: -16.01 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: -1.03 Total: -47.86 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.38 -9.97 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042548475.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.655 kcal (2) G-P(sol) polarization free energy of solvation -29.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds