Wall clock time and date at job start Mon Mar 30 2020 03:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47246 * 179.97438 * 10 9 7 12 12 C 1.46901 * 111.00245 * 179.97438 * 11 10 9 13 13 H 1.09003 * 110.25151 * 34.29746 * 12 11 10 14 14 C 1.54573 * 110.28684 * 272.26756 * 12 11 10 15 15 C 1.55131 * 102.87092 * 219.50710 * 14 12 11 16 16 N 1.48307 * 103.18488 * 37.47209 * 15 14 12 17 17 C 1.46981 * 110.61621 * 203.70764 * 16 15 14 18 18 C 1.53663 * 107.83109 * 96.73976 * 17 16 15 19 19 C 1.53981 * 105.67748 * 0.23973 * 18 17 16 20 20 C 1.48403 * 105.77380 * 320.22568 * 16 15 14 21 21 H 1.09002 * 111.79373 * 148.57201 * 20 16 15 22 22 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 24 24 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 25 25 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 26 26 H 1.09004 * 109.47253 * 59.99496 * 10 9 7 27 27 H 1.00901 * 111.00018 * 303.95220 * 11 10 9 28 28 H 1.08997 * 110.71707 * 337.81552 * 14 12 11 29 29 H 1.09001 * 110.71750 * 101.08751 * 14 12 11 30 30 H 1.08996 * 110.61390 * 279.05986 * 15 14 12 31 31 H 1.09004 * 110.84183 * 155.99005 * 15 14 12 32 32 H 1.08999 * 109.79006 * 216.32580 * 17 16 15 33 33 H 1.09003 * 109.78991 * 337.15345 * 17 16 15 34 34 H 1.08989 * 110.21125 * 119.29729 * 18 17 16 35 35 H 1.09007 * 110.20536 * 241.11479 * 18 17 16 36 36 H 1.09000 * 110.39778 * 258.29254 * 19 18 17 37 37 H 1.08999 * 110.38729 * 135.90569 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 7 1.5108 -4.9343 -0.0020 12 6 2.4352 -6.0759 -0.0024 13 1 3.3292 -5.8377 0.5740 14 6 2.8171 -6.4558 -1.4512 15 6 2.8317 -8.0065 -1.4095 16 7 1.6966 -8.3314 -0.5120 17 6 1.8788 -9.6583 0.0932 18 6 2.4967 -9.4595 1.4860 19 6 2.6571 -7.9376 1.6566 20 6 1.7426 -7.3246 0.5773 21 1 0.7474 -7.0937 0.9574 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5574 0.8881 24 1 0.6247 -2.5564 -0.8919 25 1 2.8726 -3.6039 -0.8910 26 1 2.8713 -3.6047 0.8890 27 1 0.8740 -4.9845 0.7791 28 1 2.0663 -6.0962 -2.1548 29 1 3.8030 -6.0661 -1.7049 30 1 3.7700 -8.3703 -0.9909 31 1 2.6680 -8.4227 -2.4035 32 1 0.9142 -10.1575 0.1853 33 1 2.5474 -10.2573 -0.5251 34 1 1.8319 -9.8564 2.2531 35 1 3.4686 -9.9501 1.5402 36 1 3.6931 -7.6436 1.4884 37 1 2.3308 -7.6304 2.6502 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049568252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:40 Heat of formation + Delta-G solvation = -8.887318 kcal Electronic energy + Delta-G solvation = -15567.876638 eV Core-core repulsion = 13150.952189 eV Total energy + Delta-G solvation = -2416.924449 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.26338 -35.99575 -33.66679 -32.61433 -30.69689 -28.28165 -28.09236 -24.89753 -23.31790 -21.24954 -21.18494 -20.32690 -19.88076 -16.79421 -16.22009 -15.73346 -15.05532 -14.67216 -13.96381 -13.72770 -13.65384 -13.63328 -13.12521 -12.45030 -12.17111 -12.03586 -11.56630 -11.47801 -11.30592 -11.13451 -10.94656 -10.79873 -10.72493 -10.43517 -10.12373 -10.08697 -9.68936 -8.58281 -8.54500 -8.29668 -7.88346 -6.33116 -4.01882 3.45432 3.47804 3.66539 3.94690 4.39513 4.46948 4.49945 4.63145 4.87263 4.96841 5.00117 5.16752 5.32555 5.33810 5.44839 5.47763 5.63673 5.69002 5.71904 5.79624 5.84002 5.90452 6.02484 6.15083 6.24381 6.28858 6.42721 6.81065 6.85703 6.94753 7.31179 7.52861 7.72665 7.88640 8.27454 8.49476 8.91964 9.70648 11.08083 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.061729 B = 0.004775 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.486823 B = 5862.508554 C = 5937.924351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 1.069 2.931 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.603 4.603 8 H 0.047 0.953 9 C 0.012 3.988 10 C 0.074 3.926 11 N -0.682 5.682 12 C 0.081 3.919 13 H 0.047 0.953 14 C -0.114 4.114 15 C 0.032 3.968 16 N -0.498 5.498 17 C 0.034 3.966 18 C -0.147 4.147 19 C -0.148 4.148 20 C 0.060 3.940 21 H 0.102 0.898 22 H 0.270 0.730 23 H 0.004 0.996 24 H 0.017 0.983 25 H 0.059 0.941 26 H 0.015 0.985 27 H 0.336 0.664 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.150 -18.373 1.488 19.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.189 4.189 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.214 1.214 7 C -0.642 4.642 8 H 0.065 0.935 9 C -0.025 4.025 10 C -0.055 4.055 11 N -0.313 5.313 12 C -0.030 4.030 13 H 0.064 0.936 14 C -0.153 4.153 15 C -0.096 4.096 16 N -0.220 5.220 17 C -0.095 4.095 18 C -0.186 4.186 19 C -0.188 4.188 20 C -0.049 4.049 21 H 0.120 0.880 22 H 0.080 0.920 23 H 0.022 0.978 24 H 0.035 0.965 25 H 0.078 0.922 26 H 0.034 0.966 27 H 0.154 0.846 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.059 0.941 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.343 -16.731 0.480 17.569 hybrid contribution 1.425 -1.754 1.452 2.686 sum 6.768 -18.485 1.931 19.779 Atomic orbital electron populations 1.70766 1.06866 1.30714 1.46494 1.25835 0.96559 1.02654 0.93803 0.83543 0.74873 0.75375 0.76444 1.20739 1.21549 1.21445 1.21994 0.94183 0.92050 1.55991 0.93490 1.19196 0.94670 0.92218 0.96428 1.22041 0.96631 0.88098 0.98698 1.60702 1.19302 1.01732 1.49588 1.22526 0.94186 0.90345 0.95982 0.93559 1.22629 1.01713 0.93514 0.97403 1.23319 0.92112 0.96537 0.97669 1.65844 1.40343 1.01190 1.14618 1.22795 1.00704 0.92348 0.93681 1.22580 1.01177 0.96366 0.98441 1.22910 1.00419 0.95118 1.00331 1.23426 0.99052 0.92049 0.90343 0.88020 0.91983 0.97771 0.96484 0.92232 0.96641 0.84611 0.89338 0.91634 0.94053 0.90121 0.90424 0.91701 0.91213 0.91645 0.91396 0.90833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.54 13.65 55.43 0.76 -27.78 16 2 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 3 Si 1.07 25.68 29.90 -169.99 -5.08 20.59 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.60 -17.61 9.11 -34.44 -0.31 -17.92 16 8 H 0.05 1.34 7.74 -52.49 -0.41 0.94 16 9 C 0.01 0.32 4.54 -27.88 -0.13 0.20 16 10 C 0.07 1.59 5.47 -3.83 -0.02 1.57 16 11 N -0.68 -12.43 6.29 -105.24 -0.66 -13.09 16 12 C 0.08 1.21 2.85 -66.31 -0.19 1.02 16 13 H 0.05 0.71 6.96 -51.93 -0.36 0.35 16 14 C -0.11 -1.61 6.75 -24.78 -0.17 -1.78 16 15 C 0.03 0.38 6.13 -1.92 -0.01 0.37 16 16 N -0.50 -6.33 5.78 -220.95 -1.28 -7.60 16 17 C 0.03 0.34 6.65 -3.44 -0.02 0.32 16 18 C -0.15 -1.36 6.91 -25.88 -0.18 -1.54 16 19 C -0.15 -1.62 6.17 -25.61 -0.16 -1.78 16 20 C 0.06 0.78 3.84 -65.69 -0.25 0.53 16 21 H 0.10 1.39 7.58 -51.93 -0.39 1.00 16 22 H 0.27 8.44 7.22 -40.82 -0.29 8.14 16 23 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 24 H 0.02 0.48 8.01 -51.93 -0.42 0.06 16 25 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.02 0.33 8.07 -51.93 -0.42 -0.09 16 27 H 0.34 5.89 8.08 -39.29 -0.32 5.57 16 28 H 0.09 1.42 8.06 -51.93 -0.42 1.00 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.04 0.45 7.94 -51.93 -0.41 0.04 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.59 7.68 -51.93 -0.40 0.19 16 34 H 0.07 0.59 8.14 -51.94 -0.42 0.17 16 35 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 36 H 0.07 0.75 7.38 -51.93 -0.38 0.37 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 290.54 15.07 4.38 4.38 Total: -1.00 -31.05 290.54 -9.82 -40.87 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.39 Total: 1.29 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -1.54 Total: -18.65 kcal Atomic # 7 Polarization: -47.29 SS G_CDS: -1.18 Total: -48.47 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -31.05 -9.82 -40.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049568252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.980 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds