Wall clock time and date at job start Mon Mar 30 2020 03:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 N 1.46896 * 109.47246 * 179.97438 * 10 9 7 12 12 C 1.46901 * 111.00245 * 179.97438 * 11 10 9 13 13 H 1.09003 * 110.25151 * 34.29746 * 12 11 10 14 14 C 1.54573 * 110.28684 * 272.26756 * 12 11 10 15 15 C 1.55131 * 102.87092 * 219.50710 * 14 12 11 16 16 N 1.48307 * 103.18488 * 37.47209 * 15 14 12 17 17 C 1.46981 * 110.61621 * 203.70764 * 16 15 14 18 18 C 1.53663 * 107.83109 * 96.73976 * 17 16 15 19 19 C 1.53981 * 105.67748 * 0.23973 * 18 17 16 20 20 C 1.48403 * 105.77380 * 320.22568 * 16 15 14 21 21 H 1.09002 * 111.79373 * 148.57201 * 20 16 15 22 22 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 24 24 H 1.08992 * 109.47799 * 59.99946 * 9 7 2 25 25 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 26 26 H 1.09004 * 109.47253 * 59.99496 * 10 9 7 27 27 H 1.00901 * 111.00018 * 303.95220 * 11 10 9 28 28 H 1.08997 * 110.71707 * 337.81552 * 14 12 11 29 29 H 1.09001 * 110.71750 * 101.08751 * 14 12 11 30 30 H 1.08996 * 110.61390 * 279.05986 * 15 14 12 31 31 H 1.09004 * 110.84183 * 155.99005 * 15 14 12 32 32 H 1.08999 * 109.79006 * 216.32580 * 17 16 15 33 33 H 1.09003 * 109.78991 * 337.15345 * 17 16 15 34 34 H 1.08989 * 110.21125 * 119.29729 * 18 17 16 35 35 H 1.09007 * 110.20536 * 241.11479 * 18 17 16 36 36 H 1.09000 * 110.39778 * 258.29254 * 19 18 17 37 37 H 1.08999 * 110.38729 * 135.90569 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6621 -0.0015 11 7 1.5108 -4.9343 -0.0020 12 6 2.4352 -6.0759 -0.0024 13 1 3.3292 -5.8377 0.5740 14 6 2.8171 -6.4558 -1.4512 15 6 2.8317 -8.0065 -1.4095 16 7 1.6966 -8.3314 -0.5120 17 6 1.8788 -9.6583 0.0932 18 6 2.4967 -9.4595 1.4860 19 6 2.6571 -7.9376 1.6566 20 6 1.7426 -7.3246 0.5773 21 1 0.7474 -7.0937 0.9574 22 1 -0.4850 -0.8401 -0.0004 23 1 0.6241 -2.5574 0.8881 24 1 0.6247 -2.5564 -0.8919 25 1 2.8726 -3.6039 -0.8910 26 1 2.8713 -3.6047 0.8890 27 1 0.8740 -4.9845 0.7791 28 1 2.0663 -6.0962 -2.1548 29 1 3.8030 -6.0661 -1.7049 30 1 3.7700 -8.3703 -0.9909 31 1 2.6680 -8.4227 -2.4035 32 1 0.9142 -10.1575 0.1853 33 1 2.5474 -10.2573 -0.5251 34 1 1.8319 -9.8564 2.2531 35 1 3.4686 -9.9501 1.5402 36 1 3.6931 -7.6436 1.4884 37 1 2.3308 -7.6304 2.6502 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049568252.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:39 Heat of formation + Delta-G solvation = -31.038551 kcal Electronic energy + Delta-G solvation = -15568.837188 eV Core-core repulsion = 13150.952189 eV Total energy + Delta-G solvation = -2417.884999 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.25752 -37.51979 -35.50603 -33.91556 -32.07350 -29.85004 -29.11253 -26.39143 -25.04254 -23.01795 -22.06733 -21.47545 -21.00390 -18.92729 -17.33054 -16.83293 -16.45048 -15.85803 -15.64528 -15.31332 -15.00149 -14.54177 -14.47484 -14.08438 -13.91045 -13.13057 -13.08326 -12.74307 -12.45581 -12.36989 -12.25559 -12.10244 -11.97137 -11.83168 -11.78549 -11.62696 -11.31754 -10.72901 -10.55696 -9.50833 -9.37215 -8.70901 -6.41469 1.52515 1.61525 1.81011 2.56307 3.02901 3.15057 3.19322 3.41330 3.60793 3.94639 4.01173 4.11004 4.21520 4.28122 4.36983 4.42002 4.45025 4.52286 4.65460 4.80851 4.85417 4.88800 4.92206 4.93028 5.02281 5.07599 5.21961 5.24836 5.29543 5.40630 5.85012 5.90420 6.06575 6.14555 6.18884 6.40146 6.57388 7.41551 8.70303 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.061729 B = 0.004775 C = 0.004714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.486823 B = 5862.508554 C = 5937.924351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.038 4.038 3 Si 1.120 2.880 4 H -0.283 1.283 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.622 4.622 8 H 0.051 0.949 9 C 0.016 3.984 10 C 0.094 3.906 11 N -0.688 5.688 12 C 0.078 3.922 13 H 0.048 0.952 14 C -0.116 4.116 15 C 0.040 3.960 16 N -0.517 5.517 17 C 0.031 3.969 18 C -0.140 4.140 19 C -0.146 4.146 20 C 0.061 3.939 21 H 0.091 0.909 22 H 0.255 0.745 23 H -0.012 1.012 24 H -0.010 1.010 25 H 0.055 0.945 26 H 0.018 0.982 27 H 0.338 0.662 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.819 -19.430 1.855 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.236 4.236 3 Si 0.941 3.059 4 H -0.208 1.208 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.660 4.660 8 H 0.070 0.930 9 C -0.021 4.021 10 C -0.035 4.035 11 N -0.319 5.319 12 C -0.032 4.032 13 H 0.066 0.934 14 C -0.155 4.155 15 C -0.088 4.088 16 N -0.240 5.240 17 C -0.097 4.097 18 C -0.179 4.179 19 C -0.185 4.185 20 C -0.048 4.048 21 H 0.109 0.891 22 H 0.064 0.936 23 H 0.007 0.993 24 H 0.008 0.992 25 H 0.074 0.926 26 H 0.036 0.964 27 H 0.157 0.843 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.086 0.914 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.018 -17.835 0.847 19.185 hybrid contribution 0.865 -1.488 1.318 2.168 sum 7.883 -19.323 2.165 20.981 Atomic orbital electron populations 1.70909 1.08001 1.29868 1.48541 1.27508 0.96579 1.06940 0.92531 0.82907 0.74097 0.70837 0.78080 1.20793 1.19259 1.19347 1.22431 0.94696 0.93340 1.55555 0.93037 1.19093 0.94995 0.93775 0.94282 1.21644 0.95224 0.88115 0.98541 1.60626 1.19907 1.01450 1.49947 1.22639 0.93728 0.89856 0.96966 0.93365 1.22613 1.01210 0.95575 0.96084 1.23287 0.92683 0.94516 0.98291 1.65829 1.41044 1.02250 1.14874 1.22871 1.01425 0.91078 0.94311 1.22550 1.02179 0.95031 0.98104 1.22873 0.99714 0.96279 0.99625 1.23328 0.98772 0.91398 0.91255 0.89139 0.93579 0.99344 0.99167 0.92609 0.96414 0.84337 0.91714 0.90998 0.92451 0.89150 0.90144 0.90263 0.90266 0.90142 0.91403 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.65 13.65 21.45 0.29 -59.35 16 2 C -0.04 -2.27 5.46 84.66 0.46 -1.81 16 3 Si 1.12 50.92 29.90 68.60 2.05 52.97 16 4 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.62 -36.61 9.11 25.60 0.23 -36.38 16 8 H 0.05 2.92 7.74 -2.91 -0.02 2.90 16 9 C 0.02 0.87 4.54 29.85 0.14 1.01 16 10 C 0.09 4.10 5.47 86.30 0.47 4.57 16 11 N -0.69 -25.36 6.29 -486.87 -3.06 -28.42 16 12 C 0.08 2.31 2.85 45.82 0.13 2.44 16 13 H 0.05 1.42 6.96 -2.39 -0.02 1.40 16 14 C -0.12 -3.20 6.75 31.86 0.22 -2.98 16 15 C 0.04 0.88 6.13 86.76 0.53 1.41 16 16 N -0.52 -12.25 5.78 -852.95 -4.93 -17.19 16 17 C 0.03 0.55 6.65 86.51 0.58 1.13 16 18 C -0.14 -2.17 6.91 31.15 0.22 -1.96 16 19 C -0.15 -2.86 6.17 31.32 0.19 -2.67 16 20 C 0.06 1.53 3.84 45.40 0.17 1.71 16 21 H 0.09 2.45 7.58 -2.39 -0.02 2.43 16 22 H 0.25 16.54 7.22 -92.71 -0.67 15.87 16 23 H -0.01 -0.67 8.01 -2.39 -0.02 -0.69 16 24 H -0.01 -0.59 8.01 -2.39 -0.02 -0.61 16 25 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 26 H 0.02 0.76 8.07 -2.38 -0.02 0.74 16 27 H 0.34 12.09 8.08 -89.69 -0.72 11.36 16 28 H 0.06 2.09 8.06 -2.39 -0.02 2.07 16 29 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.09 7.94 -2.39 -0.02 1.07 16 31 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.17 7.68 -2.39 -0.02 1.15 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.07 1.34 7.38 -2.39 -0.02 1.32 16 37 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -66.79 290.54 -1.91 -68.70 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: 0.40 Total: 16.83 kcal Atomic # 6 Polarization: -36.88 SS G_CDS: 3.34 Total: -33.54 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -7.70 Total: -104.96 kcal Atomic # 14 Polarization: 50.92 SS G_CDS: 2.05 Total: 52.97 kcal Total: -66.79 -1.91 -68.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049568252.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.659 kcal (2) G-P(sol) polarization free energy of solvation -66.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds