Wall clock time and date at job start Mon Mar 30 2020 03:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00062 * 2 1 4 4 H 1.48498 * 109.47409 * 270.00204 * 3 2 1 5 5 H 1.48503 * 109.46833 * 30.00813 * 3 2 1 6 6 H 1.48505 * 109.46765 * 150.00374 * 3 2 1 7 7 C 1.37874 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00529 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00177 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47434 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.47141 * 180.02562 * 10 9 7 12 12 C 1.46895 * 110.99912 * 179.97438 * 11 10 9 13 13 H 1.09003 * 110.33138 * 324.36367 * 12 11 10 14 14 C 1.54569 * 110.28902 * 86.45143 * 12 11 10 15 15 C 1.54971 * 103.10639 * 140.64854 * 14 12 11 16 16 N 1.48310 * 103.12872 * 322.33825 * 15 14 12 17 17 C 1.46978 * 110.62127 * 156.33998 * 16 15 14 18 18 C 1.53661 * 107.83637 * 263.23377 * 17 16 15 19 19 C 1.53982 * 105.67263 * 359.76897 * 18 17 16 20 20 C 1.48391 * 105.78053 * 39.81344 * 16 15 14 21 21 H 1.08998 * 111.79441 * 210.60788 * 20 16 15 22 22 H 0.97003 * 119.99844 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47281 * 59.99769 * 9 7 2 24 24 H 1.08999 * 109.47524 * 299.99935 * 9 7 2 25 25 H 1.08990 * 109.47163 * 59.99954 * 10 9 7 26 26 H 1.08999 * 109.46722 * 299.99896 * 10 9 7 27 27 H 1.00899 * 111.00066 * 56.04606 * 11 10 9 28 28 H 1.09002 * 110.71880 * 22.19287 * 14 12 11 29 29 H 1.09003 * 110.71706 * 259.10075 * 14 12 11 30 30 H 1.08993 * 110.68937 * 80.75186 * 15 14 12 31 31 H 1.08997 * 110.68048 * 203.92970 * 15 14 12 32 32 H 1.09009 * 109.78950 * 22.82147 * 17 16 15 33 33 H 1.08998 * 109.79215 * 143.63985 * 17 16 15 34 34 H 1.08999 * 110.20796 * 240.71808 * 18 17 16 35 35 H 1.08999 * 110.21058 * 118.81440 * 18 17 16 36 36 H 1.08997 * 110.39147 * 224.09158 * 19 18 17 37 37 H 1.09001 * 110.39229 * 101.70161 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 7 5.4905 -2.6367 -0.0009 12 6 6.0169 -4.0081 -0.0002 13 1 5.3770 -4.6590 0.5956 14 6 6.1252 -4.5414 -1.4469 15 6 7.4573 -5.3332 -1.4308 16 7 8.3300 -4.5066 -0.5619 17 6 9.4008 -5.3249 0.0246 18 6 8.9534 -5.7462 1.4330 19 6 7.5613 -5.1190 1.6323 20 6 7.4633 -4.0307 0.5446 21 1 7.7815 -3.0572 0.9177 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6805 0.8888 24 1 3.8745 -0.6801 -0.8911 25 1 3.6578 -3.1507 -0.8906 26 1 3.6585 -3.1502 0.8893 27 1 5.8521 -2.1105 0.7804 28 1 6.1749 -3.7175 -2.1589 29 1 5.2880 -5.1997 -1.6789 30 1 7.3114 -6.3234 -0.9994 31 1 7.8733 -5.4072 -2.4355 32 1 9.5676 -6.2098 -0.5897 33 1 10.3188 -4.7409 0.0883 34 1 9.6492 -5.3632 2.1794 35 1 8.8898 -6.8323 1.4988 36 1 7.4840 -4.6731 2.6238 37 1 6.7830 -5.8688 1.4904 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049568254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:42 Heat of formation + Delta-G solvation = -1.906492 kcal Electronic energy + Delta-G solvation = -15580.679175 eV Core-core repulsion = 13164.057437 eV Total energy + Delta-G solvation = -2416.621738 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.25130 -35.99892 -33.47130 -32.50328 -30.92228 -28.82525 -28.17009 -25.18348 -23.42746 -21.19143 -20.87238 -20.28600 -19.72555 -16.82387 -16.21523 -15.78887 -15.11205 -14.64066 -14.17847 -13.76309 -13.64868 -13.59265 -13.16259 -12.54982 -12.23673 -12.11799 -11.53924 -11.50914 -11.31043 -11.22109 -11.07055 -10.84199 -10.74475 -10.48651 -10.10821 -9.77144 -9.66626 -9.20395 -8.58333 -8.51595 -7.91300 -6.02658 -4.00945 3.35155 3.41716 3.46892 3.94407 4.38925 4.47304 4.48371 4.53319 4.86490 4.96379 5.00115 5.16437 5.31887 5.32677 5.33662 5.47493 5.63495 5.68988 5.71643 5.79668 5.83853 5.89933 6.03043 6.14684 6.22914 6.27327 6.41976 6.79083 6.82272 6.94080 7.18161 7.41104 7.64451 7.78531 7.93237 8.55036 9.01290 9.59944 11.10724 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.053431 B = 0.005142 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.914723 B = 5444.069473 C = 5521.798137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.067 3.933 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.070 0.930 9 C -0.010 4.010 10 C 0.074 3.926 11 N -0.683 5.683 12 C 0.082 3.918 13 H 0.048 0.952 14 C -0.115 4.115 15 C 0.032 3.968 16 N -0.498 5.498 17 C 0.034 3.966 18 C -0.147 4.147 19 C -0.150 4.150 20 C 0.061 3.939 21 H 0.101 0.899 22 H 0.263 0.737 23 H 0.013 0.987 24 H 0.021 0.979 25 H 0.064 0.936 26 H 0.020 0.980 27 H 0.335 0.665 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.818 -11.387 1.453 21.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.134 4.134 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.048 4.048 10 C -0.054 4.054 11 N -0.315 5.315 12 C -0.029 4.029 13 H 0.066 0.934 14 C -0.154 4.154 15 C -0.096 4.096 16 N -0.220 5.220 17 C -0.095 4.095 18 C -0.186 4.186 19 C -0.189 4.189 20 C -0.048 4.048 21 H 0.119 0.881 22 H 0.073 0.927 23 H 0.031 0.969 24 H 0.040 0.960 25 H 0.082 0.918 26 H 0.039 0.961 27 H 0.154 0.846 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 17.964 -10.749 0.435 20.939 hybrid contribution -0.244 -0.142 1.449 1.476 sum 17.720 -10.891 1.884 20.884 Atomic orbital electron populations 1.69921 1.06337 1.26907 1.51218 1.25006 0.94725 0.99225 0.94463 0.86727 0.80262 0.83372 0.78607 1.20208 1.21533 1.18975 1.21075 0.89424 0.94485 1.50966 0.91180 1.19545 0.96615 0.91866 0.96741 1.21991 0.84092 1.00011 0.99344 1.60709 1.09789 1.11432 1.49526 1.22583 0.92990 0.91234 0.96100 0.93399 1.22606 0.95589 0.99735 0.97427 1.23293 0.93520 0.94887 0.97940 1.65837 1.09116 1.31585 1.15505 1.22793 0.96369 0.96670 0.93696 1.22580 0.97026 1.00696 0.98277 1.22932 0.97118 0.98564 1.00294 1.23488 0.92519 0.98759 0.90032 0.88082 0.92747 0.96888 0.96039 0.91785 0.96130 0.84642 0.89324 0.91557 0.93995 0.90128 0.91703 0.90464 0.91239 0.91641 0.90837 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.23 13.96 55.43 0.77 -27.46 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 22.16 27.47 -169.99 -4.67 17.49 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 7 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 10 C 0.07 1.51 5.46 -3.82 -0.02 1.49 16 11 N -0.68 -11.70 6.29 -104.98 -0.66 -12.36 16 12 C 0.08 1.17 2.86 -66.06 -0.19 0.98 16 13 H 0.05 0.70 6.99 -51.93 -0.36 0.34 16 14 C -0.11 -1.56 6.67 -24.87 -0.17 -1.73 16 15 C 0.03 0.37 6.13 -2.00 -0.01 0.35 16 16 N -0.50 -6.09 5.78 -220.77 -1.28 -7.37 16 17 C 0.03 0.33 6.65 -3.44 -0.02 0.31 16 18 C -0.15 -1.31 6.91 -25.88 -0.18 -1.49 16 19 C -0.15 -1.57 6.17 -25.60 -0.16 -1.72 16 20 C 0.06 0.76 3.82 -65.44 -0.25 0.51 16 21 H 0.10 1.31 7.66 -51.93 -0.40 0.91 16 22 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 23 H 0.01 0.31 7.20 -51.93 -0.37 -0.06 16 24 H 0.02 0.53 7.57 -51.93 -0.39 0.14 16 25 H 0.06 1.34 8.11 -51.93 -0.42 0.92 16 26 H 0.02 0.42 8.08 -51.93 -0.42 0.00 16 27 H 0.34 5.44 8.16 -39.29 -0.32 5.12 16 28 H 0.09 1.36 8.06 -51.93 -0.42 0.94 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.04 0.45 7.94 -51.93 -0.41 0.03 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.57 7.68 -51.92 -0.40 0.17 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.73 7.38 -51.93 -0.38 0.35 16 LS Contribution 288.34 15.07 4.35 4.35 Total: -1.00 -30.70 288.34 -9.46 -40.16 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -6.42 Total: 0.40 kcal Atomic # 6 Polarization: -13.66 SS G_CDS: -1.55 Total: -15.21 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: -1.16 Total: -47.19 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.67 Total: 17.49 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.70 -9.46 -40.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049568254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.255 kcal (2) G-P(sol) polarization free energy of solvation -30.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds