Wall clock time and date at job start Mon Mar 30 2020 03:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00062 * 2 1 4 4 H 1.48498 * 109.47409 * 270.00204 * 3 2 1 5 5 H 1.48503 * 109.46833 * 30.00813 * 3 2 1 6 6 H 1.48505 * 109.46765 * 150.00374 * 3 2 1 7 7 C 1.37874 * 119.99836 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00529 * 359.97438 * 7 2 1 9 9 C 1.50696 * 120.00177 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47434 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.47141 * 180.02562 * 10 9 7 12 12 C 1.46895 * 110.99912 * 179.97438 * 11 10 9 13 13 H 1.09003 * 110.33138 * 324.36367 * 12 11 10 14 14 C 1.54569 * 110.28902 * 86.45143 * 12 11 10 15 15 C 1.54971 * 103.10639 * 140.64854 * 14 12 11 16 16 N 1.48310 * 103.12872 * 322.33825 * 15 14 12 17 17 C 1.46978 * 110.62127 * 156.33998 * 16 15 14 18 18 C 1.53661 * 107.83637 * 263.23377 * 17 16 15 19 19 C 1.53982 * 105.67263 * 359.76897 * 18 17 16 20 20 C 1.48391 * 105.78053 * 39.81344 * 16 15 14 21 21 H 1.08998 * 111.79441 * 210.60788 * 20 16 15 22 22 H 0.97003 * 119.99844 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.47281 * 59.99769 * 9 7 2 24 24 H 1.08999 * 109.47524 * 299.99935 * 9 7 2 25 25 H 1.08990 * 109.47163 * 59.99954 * 10 9 7 26 26 H 1.08999 * 109.46722 * 299.99896 * 10 9 7 27 27 H 1.00899 * 111.00066 * 56.04606 * 11 10 9 28 28 H 1.09002 * 110.71880 * 22.19287 * 14 12 11 29 29 H 1.09003 * 110.71706 * 259.10075 * 14 12 11 30 30 H 1.08993 * 110.68937 * 80.75186 * 15 14 12 31 31 H 1.08997 * 110.68048 * 203.92970 * 15 14 12 32 32 H 1.09009 * 109.78950 * 22.82147 * 17 16 15 33 33 H 1.08998 * 109.79215 * 143.63985 * 17 16 15 34 34 H 1.08999 * 110.20796 * 240.71808 * 18 17 16 35 35 H 1.08999 * 110.21058 * 118.81440 * 18 17 16 36 36 H 1.08997 * 110.39147 * 224.09158 * 19 18 17 37 37 H 1.09001 * 110.39229 * 101.70161 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0215 -2.6367 -0.0010 11 7 5.4905 -2.6367 -0.0009 12 6 6.0169 -4.0081 -0.0002 13 1 5.3770 -4.6590 0.5956 14 6 6.1252 -4.5414 -1.4469 15 6 7.4573 -5.3332 -1.4308 16 7 8.3300 -4.5066 -0.5619 17 6 9.4008 -5.3249 0.0246 18 6 8.9534 -5.7462 1.4330 19 6 7.5613 -5.1190 1.6323 20 6 7.4633 -4.0307 0.5446 21 1 7.7815 -3.0572 0.9177 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6805 0.8888 24 1 3.8745 -0.6801 -0.8911 25 1 3.6578 -3.1507 -0.8906 26 1 3.6585 -3.1502 0.8893 27 1 5.8521 -2.1105 0.7804 28 1 6.1749 -3.7175 -2.1589 29 1 5.2880 -5.1997 -1.6789 30 1 7.3114 -6.3234 -0.9994 31 1 7.8733 -5.4072 -2.4355 32 1 9.5676 -6.2098 -0.5897 33 1 10.3188 -4.7409 0.0883 34 1 9.6492 -5.3632 2.1794 35 1 8.8898 -6.8323 1.4988 36 1 7.4840 -4.6731 2.6238 37 1 6.7830 -5.8688 1.4904 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049568254.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:42 Heat of formation + Delta-G solvation = -24.346059 kcal Electronic energy + Delta-G solvation = -15581.652228 eV Core-core repulsion = 13164.057437 eV Total energy + Delta-G solvation = -2417.594790 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.19209 -37.40295 -35.16977 -33.93817 -32.36073 -30.30380 -29.07628 -26.62106 -24.92145 -22.48893 -22.02051 -21.41869 -20.88007 -18.96680 -17.30019 -16.81533 -16.39125 -16.25240 -15.59053 -15.04704 -14.93495 -14.58479 -14.47979 -14.42085 -13.52463 -13.26287 -13.12488 -12.85708 -12.40642 -12.33772 -12.19348 -12.08498 -11.91187 -11.77959 -11.64840 -11.48531 -11.41364 -11.22252 -10.77396 -9.46981 -9.31071 -8.30506 -6.35202 1.37985 1.38725 1.51646 2.36713 3.05273 3.07249 3.24083 3.45456 3.65569 3.99713 4.05734 4.14976 4.26724 4.34611 4.45194 4.47950 4.50897 4.57250 4.71127 4.84482 4.91127 4.96265 4.96828 4.97430 5.05973 5.11284 5.26654 5.29781 5.35340 5.48226 5.62654 5.89924 6.09410 6.17549 6.25803 6.53059 6.73330 7.29931 8.86242 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.053431 B = 0.005142 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.914723 B = 5444.069473 C = 5521.798137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.283 1.283 6 H -0.247 1.247 7 C -0.535 4.535 8 H 0.031 0.969 9 C -0.004 4.004 10 C 0.089 3.911 11 N -0.684 5.684 12 C 0.079 3.921 13 H 0.046 0.954 14 C -0.117 4.117 15 C 0.040 3.960 16 N -0.516 5.516 17 C 0.032 3.968 18 C -0.140 4.140 19 C -0.148 4.148 20 C 0.063 3.937 21 H 0.096 0.904 22 H 0.267 0.733 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.053 0.947 26 H 0.016 0.984 27 H 0.342 0.658 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.301 -11.411 1.850 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.191 4.191 3 Si 0.778 3.222 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.042 4.042 10 C -0.040 4.040 11 N -0.316 5.316 12 C -0.031 4.031 13 H 0.064 0.936 14 C -0.156 4.156 15 C -0.089 4.089 16 N -0.238 5.238 17 C -0.097 4.097 18 C -0.179 4.179 19 C -0.187 4.187 20 C -0.046 4.046 21 H 0.114 0.886 22 H 0.076 0.924 23 H 0.038 0.962 24 H 0.039 0.961 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.161 0.839 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 20.471 -10.796 0.835 23.158 hybrid contribution -1.059 -0.214 1.305 1.695 sum 19.412 -11.010 2.140 22.419 Atomic orbital electron populations 1.70067 1.08308 1.28255 1.52527 1.25992 0.95611 1.03539 0.93911 0.85593 0.79406 0.78032 0.79187 1.19334 1.20839 1.17035 1.21405 0.91937 0.93205 1.50759 0.95054 1.19430 0.93536 0.94437 0.96753 1.21635 0.86333 0.97320 0.98673 1.60625 1.07386 1.13555 1.49990 1.22676 0.94232 0.89399 0.96819 0.93584 1.22588 0.97185 0.99462 0.96373 1.23257 0.92101 0.94915 0.98578 1.65834 1.09598 1.32657 1.15743 1.22866 0.95632 0.96916 0.94268 1.22552 0.96036 1.01368 0.97978 1.22901 0.98126 0.97892 0.99788 1.23400 0.90986 0.99369 0.90811 0.88625 0.92406 0.96153 0.96138 0.92829 0.96600 0.83911 0.91295 0.91384 0.92738 0.89219 0.90497 0.90043 0.90206 0.90429 0.90276 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.51 13.96 21.45 0.30 -60.21 16 2 C 0.01 0.38 5.47 84.65 0.46 0.84 16 3 Si 0.95 45.28 27.47 68.60 1.88 47.17 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 7 C -0.53 -31.59 9.66 25.60 0.25 -31.34 16 8 H 0.03 2.03 7.99 -2.91 -0.02 2.00 16 9 C 0.00 -0.18 4.30 29.85 0.13 -0.05 16 10 C 0.09 3.65 5.46 86.30 0.47 4.13 16 11 N -0.68 -22.84 6.29 -486.05 -3.06 -25.90 16 12 C 0.08 2.19 2.86 45.99 0.13 2.32 16 13 H 0.05 1.31 6.99 -2.39 -0.02 1.29 16 14 C -0.12 -3.09 6.67 31.80 0.21 -2.88 16 15 C 0.04 0.83 6.13 86.70 0.53 1.37 16 16 N -0.52 -11.51 5.78 -852.38 -4.93 -16.43 16 17 C 0.03 0.53 6.65 86.51 0.58 1.10 16 18 C -0.14 -2.08 6.91 31.15 0.22 -1.86 16 19 C -0.15 -2.75 6.17 31.32 0.19 -2.55 16 20 C 0.06 1.46 3.82 45.56 0.17 1.64 16 21 H 0.10 2.32 7.66 -2.39 -0.02 2.30 16 22 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 23 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 24 H 0.02 0.99 7.57 -2.39 -0.02 0.97 16 25 H 0.05 2.28 8.11 -2.39 -0.02 2.26 16 26 H 0.02 0.65 8.08 -2.39 -0.02 0.64 16 27 H 0.34 10.62 8.16 -89.69 -0.73 9.89 16 28 H 0.07 2.09 8.06 -2.39 -0.02 2.07 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 30 H 0.05 1.02 7.94 -2.39 -0.02 1.00 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.08 1.10 7.68 -2.38 -0.02 1.08 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.25 7.38 -2.39 -0.02 1.24 16 Total: -1.00 -65.94 288.34 -2.22 -68.16 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.24 Total: 14.52 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 3.34 Total: -27.31 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -7.69 Total: -102.54 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.17 kcal Total: -65.94 -2.22 -68.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049568254.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.810 kcal (2) G-P(sol) polarization free energy of solvation -65.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds