Wall clock time and date at job start Mon Mar 30 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46893 * 109.47285 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00104 * 180.02562 * 11 10 9 13 13 H 1.09002 * 110.31760 * 327.20745 * 12 11 10 14 14 C 1.53927 * 110.35426 * 89.52757 * 12 11 10 15 15 C 1.53489 * 105.76137 * 135.06143 * 14 12 11 16 16 N 1.47488 * 108.21367 * 359.30585 * 15 14 12 17 17 C 1.47905 * 109.00099 * 227.55598 * 16 15 14 18 18 C 1.54265 * 107.42090 * 112.63201 * 17 16 15 19 19 C 1.55251 * 103.10632 * 339.33069 * 18 17 16 20 20 C 1.48286 * 107.64991 * 344.12018 * 16 15 14 21 21 H 1.09005 * 111.67756 * 148.17300 * 20 16 15 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 24 24 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 25 25 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 26 26 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 27 27 H 1.00904 * 111.00404 * 303.96127 * 11 10 9 28 28 H 1.08998 * 110.19079 * 254.12969 * 14 12 11 29 29 H 1.08997 * 110.19454 * 15.98809 * 14 12 11 30 30 H 1.08999 * 109.72558 * 239.60629 * 15 14 12 31 31 H 1.09002 * 109.70121 * 118.99255 * 15 14 12 32 32 H 1.09004 * 109.86142 * 232.09659 * 17 16 15 33 33 H 1.09003 * 109.86039 * 353.17036 * 17 16 15 34 34 H 1.09002 * 110.69015 * 97.73612 * 18 17 16 35 35 H 1.09000 * 110.69547 * 220.75472 * 18 17 16 36 36 H 1.08996 * 111.07201 * 277.90319 * 19 18 17 37 37 H 1.08999 * 111.07056 * 153.88218 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5110 -4.9341 0.0168 12 6 2.4355 -6.0757 0.0224 13 1 3.3415 -5.8318 -0.5326 14 6 2.7819 -6.4771 1.4675 15 6 2.6795 -8.0080 1.5109 16 7 2.2785 -8.4813 0.1728 17 6 1.1728 -9.4530 0.3171 18 6 -0.0910 -8.8079 -0.2883 19 6 0.2440 -7.2921 -0.2695 20 6 1.7581 -7.3143 -0.5796 21 1 1.9588 -7.4016 -1.6475 22 1 -0.4850 0.8400 0.0004 23 1 0.6245 -2.5529 0.8956 24 1 0.6244 -2.5609 -0.8844 25 1 2.8721 -3.6081 -0.8798 26 1 2.8721 -3.6002 0.9002 27 1 0.8749 -4.9806 0.7986 28 1 3.7956 -6.1608 1.7131 29 1 2.0696 -6.0326 2.1625 30 1 1.9318 -8.3060 2.2459 31 1 3.6471 -8.4336 1.7770 32 1 1.4137 -10.3705 -0.2198 33 1 1.0075 -9.6719 1.3721 34 1 -0.2489 -9.1548 -1.3096 35 1 -0.9646 -9.0196 0.3282 36 1 0.0516 -6.8604 0.7126 37 1 -0.3070 -6.7594 -1.0445 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049568255.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:45 Heat of formation + Delta-G solvation = -2.586523 kcal Electronic energy + Delta-G solvation = -15672.787801 eV Core-core repulsion = 13256.136574 eV Total energy + Delta-G solvation = -2416.651226 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.26426 -35.89207 -33.43923 -32.54717 -30.64405 -28.17855 -28.04151 -25.09941 -23.70588 -21.18984 -20.89046 -20.39667 -19.43710 -16.58097 -16.32572 -15.50412 -14.76503 -14.43590 -14.22489 -14.06301 -13.58324 -13.30213 -12.88955 -12.33565 -12.01540 -11.84060 -11.69994 -11.59583 -11.17866 -10.98728 -10.95950 -10.88713 -10.56709 -10.45612 -10.24887 -10.01187 -9.37074 -9.16370 -8.49074 -8.35349 -7.79860 -5.99856 -4.02541 3.33474 3.37807 3.40208 4.00907 4.42764 4.49914 4.56654 4.92251 5.01694 5.05642 5.13768 5.15303 5.35965 5.36388 5.51602 5.54492 5.66964 5.80188 5.85868 5.89816 6.00152 6.10936 6.21693 6.24622 6.33738 6.39444 6.45889 6.89839 6.94242 6.98363 7.48786 7.71955 7.81969 7.94303 8.07807 8.43325 9.04509 9.61309 11.11551 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.058289 B = 0.005085 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.248913 B = 5505.082498 C = 5789.962691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.026 3.974 10 C 0.066 3.934 11 N -0.680 5.680 12 C 0.086 3.914 13 H 0.083 0.917 14 C -0.163 4.163 15 C 0.036 3.964 16 N -0.507 5.507 17 C 0.031 3.969 18 C -0.148 4.148 19 C -0.127 4.127 20 C 0.069 3.931 21 H 0.097 0.903 22 H 0.261 0.739 23 H 0.012 0.988 24 H 0.025 0.975 25 H 0.058 0.942 26 H 0.015 0.985 27 H 0.336 0.664 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.063 -16.866 1.891 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.310 5.310 12 C -0.026 4.026 13 H 0.101 0.899 14 C -0.203 4.203 15 C -0.092 4.092 16 N -0.230 5.230 17 C -0.098 4.098 18 C -0.186 4.186 19 C -0.166 4.166 20 C -0.039 4.039 21 H 0.115 0.885 22 H 0.071 0.929 23 H 0.030 0.970 24 H 0.043 0.957 25 H 0.077 0.923 26 H 0.033 0.967 27 H 0.155 0.845 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.308 -17.008 0.932 17.189 hybrid contribution 0.105 1.350 1.457 1.989 sum 2.413 -15.658 2.389 16.022 Atomic orbital electron populations 1.69959 1.06039 1.26705 1.50597 1.24993 0.94832 0.99196 0.95273 0.86651 0.79570 0.83119 0.78602 1.20192 1.21262 1.20317 1.21139 0.92945 0.91038 1.50983 0.92827 1.19060 0.94012 0.90461 0.97628 1.22190 0.96983 0.88378 0.98644 1.60643 1.18969 1.01762 1.49619 1.22140 0.95536 0.91316 0.93633 0.89858 1.23066 1.02565 0.95757 0.98957 1.22869 1.00941 0.94737 0.90702 1.65877 1.32728 1.11478 1.12954 1.23220 0.89782 0.96622 1.00146 1.22900 0.97770 0.96560 1.01385 1.22854 0.96488 0.94661 1.02636 1.23174 0.93246 0.88586 0.98922 0.88462 0.92939 0.96951 0.95661 0.92299 0.96667 0.84499 0.91106 0.91397 0.93399 0.90843 0.90737 0.92389 0.91201 0.91418 0.91534 0.89845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.86 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 10 C 0.07 1.38 5.47 -3.83 -0.02 1.36 16 11 N -0.68 -11.82 5.43 -105.95 -0.58 -12.39 16 12 C 0.09 1.26 3.09 -66.99 -0.21 1.05 16 13 H 0.08 1.29 7.82 -51.93 -0.41 0.88 16 14 C -0.16 -2.14 6.46 -25.99 -0.17 -2.31 16 15 C 0.04 0.43 6.59 -3.25 -0.02 0.40 16 16 N -0.51 -6.34 5.87 -221.78 -1.30 -7.64 16 17 C 0.03 0.33 6.80 -2.61 -0.02 0.31 16 18 C -0.15 -1.55 6.93 -24.88 -0.17 -1.72 16 19 C -0.13 -1.61 5.38 -24.72 -0.13 -1.74 16 20 C 0.07 0.93 3.94 -65.88 -0.26 0.67 16 21 H 0.10 1.34 8.14 -51.93 -0.42 0.92 16 22 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 23 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 1.25 8.07 -51.93 -0.42 0.83 16 26 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.34 5.73 6.97 -39.29 -0.27 5.46 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.07 0.91 7.49 -51.93 -0.39 0.52 16 30 H 0.05 0.53 6.88 -51.93 -0.36 0.17 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.57 6.87 -51.93 -0.36 0.21 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.88 6.98 -51.93 -0.36 0.52 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 288.47 15.07 4.35 4.35 Total: -1.00 -29.34 288.47 -9.71 -39.05 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.33 Total: 1.22 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -1.56 Total: -15.03 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -1.14 Total: -46.29 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.34 -9.71 -39.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049568255.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.459 kcal (2) G-P(sol) polarization free energy of solvation -29.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds