Wall clock time and date at job start Mon Mar 30 2020 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 N 1.46893 * 109.47285 * 179.97438 * 10 9 7 12 12 C 1.46897 * 111.00104 * 180.02562 * 11 10 9 13 13 H 1.09002 * 110.31760 * 327.20745 * 12 11 10 14 14 C 1.53927 * 110.35426 * 89.52757 * 12 11 10 15 15 C 1.53489 * 105.76137 * 135.06143 * 14 12 11 16 16 N 1.47488 * 108.21367 * 359.30585 * 15 14 12 17 17 C 1.47905 * 109.00099 * 227.55598 * 16 15 14 18 18 C 1.54265 * 107.42090 * 112.63201 * 17 16 15 19 19 C 1.55251 * 103.10632 * 339.33069 * 18 17 16 20 20 C 1.48286 * 107.64991 * 344.12018 * 16 15 14 21 21 H 1.09005 * 111.67756 * 148.17300 * 20 16 15 22 22 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 24 24 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 25 25 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 26 26 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 27 27 H 1.00904 * 111.00404 * 303.96127 * 11 10 9 28 28 H 1.08998 * 110.19079 * 254.12969 * 14 12 11 29 29 H 1.08997 * 110.19454 * 15.98809 * 14 12 11 30 30 H 1.08999 * 109.72558 * 239.60629 * 15 14 12 31 31 H 1.09002 * 109.70121 * 118.99255 * 15 14 12 32 32 H 1.09004 * 109.86142 * 232.09659 * 17 16 15 33 33 H 1.09003 * 109.86039 * 353.17036 * 17 16 15 34 34 H 1.09002 * 110.69015 * 97.73612 * 18 17 16 35 35 H 1.09000 * 110.69547 * 220.75472 * 18 17 16 36 36 H 1.08996 * 111.07201 * 277.90319 * 19 18 17 37 37 H 1.08999 * 111.07056 * 153.88218 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 7 1.5110 -4.9341 0.0168 12 6 2.4355 -6.0757 0.0224 13 1 3.3415 -5.8318 -0.5326 14 6 2.7819 -6.4771 1.4675 15 6 2.6795 -8.0080 1.5109 16 7 2.2785 -8.4813 0.1728 17 6 1.1728 -9.4530 0.3171 18 6 -0.0910 -8.8079 -0.2883 19 6 0.2440 -7.2921 -0.2695 20 6 1.7581 -7.3143 -0.5796 21 1 1.9588 -7.4016 -1.6475 22 1 -0.4850 0.8400 0.0004 23 1 0.6245 -2.5529 0.8956 24 1 0.6244 -2.5609 -0.8844 25 1 2.8721 -3.6081 -0.8798 26 1 2.8721 -3.6002 0.9002 27 1 0.8749 -4.9806 0.7986 28 1 3.7956 -6.1608 1.7131 29 1 2.0696 -6.0326 2.1625 30 1 1.9318 -8.3060 2.2459 31 1 3.6471 -8.4336 1.7770 32 1 1.4137 -10.3705 -0.2198 33 1 1.0075 -9.6719 1.3721 34 1 -0.2489 -9.1548 -1.3096 35 1 -0.9646 -9.0196 0.3282 36 1 0.0516 -6.8604 0.7126 37 1 -0.3070 -6.7594 -1.0445 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049568255.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:20:45 Heat of formation + Delta-G solvation = -22.711466 kcal Electronic energy + Delta-G solvation = -15673.660484 eV Core-core repulsion = 13256.136574 eV Total energy + Delta-G solvation = -2417.523909 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.30224 -37.33947 -35.21763 -33.90758 -32.15885 -29.69780 -29.09673 -26.51391 -25.35874 -22.65002 -22.04023 -21.64267 -20.55014 -18.49144 -17.68336 -16.70978 -16.37695 -16.03104 -15.50945 -15.14541 -14.82472 -14.46004 -14.27100 -14.14454 -13.43650 -13.27839 -12.87988 -12.79887 -12.71909 -12.56077 -12.44701 -12.04877 -11.98931 -11.85848 -11.44007 -11.43867 -11.30251 -11.15446 -10.56376 -9.45629 -9.23603 -8.20574 -6.32170 1.40304 1.43419 1.51376 2.40263 2.96956 3.12947 3.38030 3.52486 3.80371 3.99672 4.07578 4.11149 4.19868 4.38758 4.44885 4.53718 4.60967 4.63172 4.69332 4.86662 4.92396 4.99030 5.05163 5.06743 5.13414 5.19480 5.23227 5.39862 5.44163 5.67253 5.77112 5.90559 6.02383 6.14911 6.29198 6.51904 6.84851 7.37232 8.91352 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.058289 B = 0.005085 C = 0.004835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.248913 B = 5505.082498 C = 5789.962691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.033 3.967 10 C 0.086 3.914 11 N -0.680 5.680 12 C 0.083 3.917 13 H 0.075 0.925 14 C -0.159 4.159 15 C 0.039 3.961 16 N -0.515 5.515 17 C 0.030 3.970 18 C -0.140 4.140 19 C -0.128 4.128 20 C 0.071 3.929 21 H 0.092 0.908 22 H 0.264 0.736 23 H -0.010 1.010 24 H -0.006 1.006 25 H 0.056 0.944 26 H 0.018 0.982 27 H 0.338 0.662 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 -17.649 2.357 18.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.078 0.922 9 C -0.004 4.004 10 C -0.043 4.043 11 N -0.311 5.311 12 C -0.028 4.028 13 H 0.094 0.906 14 C -0.199 4.199 15 C -0.089 4.089 16 N -0.238 5.238 17 C -0.098 4.098 18 C -0.178 4.178 19 C -0.167 4.167 20 C -0.038 4.038 21 H 0.110 0.890 22 H 0.073 0.927 23 H 0.009 0.991 24 H 0.013 0.987 25 H 0.075 0.925 26 H 0.037 0.963 27 H 0.157 0.843 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.256 -17.820 1.400 18.169 hybrid contribution -0.217 1.546 1.302 2.033 sum 3.039 -16.274 2.702 16.774 Atomic orbital electron populations 1.70096 1.07820 1.27874 1.51361 1.25956 0.95744 1.03322 0.94570 0.85489 0.78262 0.78027 0.79184 1.19187 1.20765 1.19154 1.21584 0.93513 0.92300 1.51056 0.92218 1.18905 0.94269 0.92263 0.94991 1.21782 0.95553 0.88322 0.98607 1.60538 1.19356 1.01243 1.49975 1.22166 0.94781 0.90750 0.95088 0.90646 1.22998 1.02562 0.96998 0.97359 1.22889 1.01901 0.93454 0.90675 1.65900 1.33549 1.11116 1.13234 1.23301 0.89043 0.96389 1.01105 1.22867 0.98341 0.94510 1.02129 1.22797 0.95877 0.96343 1.01671 1.23081 0.93617 0.88341 0.98719 0.89017 0.92731 0.99125 0.98743 0.92547 0.96345 0.84262 0.90809 0.91762 0.92286 0.89797 0.89670 0.91226 0.90631 0.90115 0.92238 0.91215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 2 C 0.00 0.12 5.46 84.65 0.46 0.59 16 3 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.55 -31.41 9.11 25.60 0.23 -31.17 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.78 5.23 29.85 0.16 1.94 16 10 C 0.09 3.64 5.47 86.31 0.47 4.12 16 11 N -0.68 -23.87 5.43 -489.13 -2.66 -26.53 16 12 C 0.08 2.41 3.09 45.39 0.14 2.55 16 13 H 0.08 2.30 7.82 -2.39 -0.02 2.29 16 14 C -0.16 -3.96 6.46 31.07 0.20 -3.76 16 15 C 0.04 0.84 6.59 86.35 0.57 1.40 16 16 N -0.51 -11.82 5.87 -855.57 -5.03 -16.84 16 17 C 0.03 0.55 6.80 86.54 0.59 1.14 16 18 C -0.14 -2.65 6.93 31.80 0.22 -2.43 16 19 C -0.13 -3.13 5.38 31.90 0.17 -2.95 16 20 C 0.07 1.84 3.94 45.34 0.18 2.02 16 21 H 0.09 2.47 8.14 -2.38 -0.02 2.45 16 22 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 23 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 24 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 25 H 0.06 2.40 8.07 -2.39 -0.02 2.38 16 26 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.34 11.67 6.97 -89.69 -0.63 11.05 16 28 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.06 1.65 7.49 -2.39 -0.02 1.63 16 30 H 0.06 1.14 6.88 -2.39 -0.02 1.12 16 31 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.07 1.15 6.87 -2.39 -0.02 1.13 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.06 1.53 6.98 -2.39 -0.02 1.51 16 37 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -62.48 288.47 -1.58 -64.05 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.40 Total: 16.31 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: 3.39 Total: -26.56 kcal Atomic # 7 Polarization: -92.83 SS G_CDS: -7.40 Total: -100.23 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -62.48 -1.58 -64.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049568255.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.340 kcal (2) G-P(sol) polarization free energy of solvation -62.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds