Wall clock time and date at job start Mon Mar 30 2020 03:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99684 * 2 1 4 4 H 1.48502 * 109.47007 * 89.99765 * 3 2 1 5 5 H 1.48498 * 109.47009 * 209.99414 * 3 2 1 6 6 H 1.48503 * 109.47202 * 329.99851 * 3 2 1 7 7 C 1.37868 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00053 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00238 * 180.02562 * 7 2 1 10 10 N 1.46891 * 109.47354 * 174.58537 * 9 7 2 11 11 C 1.47904 * 111.00042 * 69.42678 * 10 9 7 12 12 C 1.53994 * 107.05958 * 214.15324 * 11 10 9 13 13 C 1.54600 * 105.13796 * 1.22596 * 12 11 10 14 14 C 1.48530 * 111.00384 * 312.03139 * 10 9 7 15 15 H 1.08998 * 110.66982 * 41.28252 * 14 10 9 16 16 C 1.53004 * 110.66662 * 278.15483 * 14 10 9 17 17 H 1.09000 * 109.90730 * 305.93253 * 16 14 10 18 18 C 1.54001 * 109.91680 * 67.03356 * 16 14 10 19 19 C 1.54594 * 105.14018 * 120.57804 * 18 16 14 20 20 C 1.54938 * 102.92033 * 21.95558 * 19 18 16 21 21 N 1.47902 * 109.91662 * 184.82521 * 16 14 10 22 22 H 0.97001 * 120.00177 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47146 * 294.58921 * 9 7 2 24 24 H 1.09003 * 109.46822 * 54.58538 * 9 7 2 25 25 H 1.08998 * 109.91638 * 333.50928 * 11 10 9 26 26 H 1.09001 * 109.91728 * 94.60428 * 11 10 9 27 27 H 1.09001 * 110.30638 * 120.14147 * 12 11 10 28 28 H 1.08997 * 110.31494 * 242.31010 * 12 11 10 29 29 H 1.09000 * 110.71937 * 140.31136 * 13 12 11 30 30 H 1.09001 * 110.72150 * 263.41833 * 13 12 11 31 31 H 1.08995 * 110.30814 * 239.49912 * 18 16 14 32 32 H 1.09003 * 110.30312 * 1.65938 * 18 16 14 33 33 H 1.09002 * 110.72272 * 140.31564 * 19 18 16 34 34 H 1.09000 * 110.72218 * 263.42399 * 19 18 16 35 35 H 1.08999 * 110.66609 * 81.02073 * 20 19 18 36 36 H 1.09001 * 110.66686 * 204.14903 * 20 19 18 37 37 H 1.00895 * 111.00052 * 335.83542 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.6999 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 7 4.0011 -2.5726 0.1323 11 6 3.7209 -3.3534 -1.0922 12 6 3.4292 -4.7992 -0.6492 13 6 3.5308 -4.7771 0.8933 14 6 3.3029 -3.2830 1.2341 15 1 2.2391 -3.0457 1.2316 16 6 3.9319 -2.9353 2.5848 17 1 5.0039 -3.1306 2.5563 18 6 3.6773 -1.4531 2.9161 19 6 2.8937 -1.4660 4.2487 20 6 3.2522 -2.8491 4.8480 21 7 3.3019 -3.7379 3.6555 22 1 -0.4850 0.8400 -0.0004 23 1 3.8752 -0.7666 -0.9333 24 1 3.8745 -0.5982 0.8387 25 1 2.8527 -2.9400 -1.6056 26 1 4.5876 -3.3321 -1.7528 27 1 2.4265 -5.0945 -0.9582 28 1 4.1706 -5.4799 -1.0674 29 1 2.7537 -5.3974 1.3398 30 1 4.5182 -5.1038 1.2195 31 1 4.6229 -0.9249 3.0383 32 1 3.0815 -0.9870 2.1313 33 1 3.2322 -0.6626 4.9030 34 1 1.8219 -1.3877 4.0666 35 1 4.2243 -2.8149 5.3398 36 1 2.4799 -3.1792 5.5427 37 1 2.3755 -4.0345 3.3876 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051360218.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:03 Heat of formation + Delta-G solvation = 9.234633 kcal Electronic energy + Delta-G solvation = -16713.410950 eV Core-core repulsion = 14297.272327 eV Total energy + Delta-G solvation = -2416.138622 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.26330 -36.88630 -33.16260 -31.26268 -30.07725 -29.16076 -26.71376 -26.00169 -22.60530 -21.35028 -20.08563 -20.02098 -19.15608 -17.09283 -15.58417 -15.43624 -14.76409 -14.25423 -13.89877 -13.75188 -13.10589 -12.81266 -12.62324 -12.30337 -12.16774 -11.67111 -11.16393 -11.05119 -10.97417 -10.74139 -10.64360 -10.57514 -10.22243 -10.02769 -9.93662 -9.72993 -9.58827 -9.36634 -8.65365 -8.22607 -7.27484 -6.18147 -4.17755 3.21253 3.30189 3.34384 4.32626 4.53975 5.06351 5.17016 5.27787 5.33144 5.36922 5.46251 5.57365 5.71731 5.83175 5.96342 6.00281 6.16748 6.21398 6.25697 6.38528 6.40193 6.50364 6.55769 6.62816 6.65393 6.77890 6.86423 6.95509 7.02708 7.18465 7.27284 7.51412 7.74754 7.97706 8.05425 8.37604 8.84216 9.44505 10.94042 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.021106 B = 0.013150 C = 0.009464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.314763 B = 2128.813497 C = 2957.861171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.075 3.925 3 Si 0.871 3.129 4 H -0.274 1.274 5 H -0.263 1.263 6 H -0.287 1.287 7 C -0.549 4.549 8 H 0.078 0.922 9 C 0.134 3.866 10 N -0.509 5.509 11 C 0.039 3.961 12 C -0.129 4.129 13 C -0.112 4.112 14 C 0.060 3.940 15 H 0.082 0.918 16 C 0.097 3.903 17 H 0.078 0.922 18 C -0.167 4.167 19 C -0.157 4.157 20 C 0.042 3.958 21 N -0.669 5.669 22 H 0.264 0.736 23 H 0.023 0.977 24 H 0.039 0.961 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.114 0.886 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.334 0.666 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.086 -5.407 4.797 9.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.698 3.302 4 H -0.200 1.200 5 H -0.188 1.188 6 H -0.212 1.212 7 C -0.587 4.587 8 H 0.096 0.904 9 C 0.007 3.993 10 N -0.233 5.233 11 C -0.089 4.089 12 C -0.168 4.168 13 C -0.150 4.150 14 C -0.049 4.049 15 H 0.100 0.900 16 C -0.013 4.013 17 H 0.096 0.904 18 C -0.205 4.205 19 C -0.196 4.196 20 C -0.088 4.088 21 N -0.297 5.297 22 H 0.074 0.926 23 H 0.041 0.959 24 H 0.057 0.943 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.132 0.868 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.099 -5.656 5.069 10.396 hybrid contribution -1.313 1.752 -0.463 2.238 sum 5.786 -3.904 4.606 8.363 Atomic orbital electron populations 1.69915 1.06305 1.27039 1.50080 1.24941 0.94638 0.99027 0.94162 0.86920 0.80616 0.83885 0.78821 1.19992 1.18784 1.21249 1.21634 0.90532 0.94572 1.51962 0.90422 1.20554 0.94704 0.87115 0.96959 1.64888 1.52913 1.03125 1.02368 1.22695 1.00085 0.92283 0.93874 1.22372 1.00707 0.97215 0.96473 1.22424 1.01288 0.96525 0.94783 1.23024 0.98859 0.91881 0.91143 0.90030 1.22102 0.98872 0.90652 0.89713 0.90362 1.23308 1.00610 0.98173 0.98433 1.23089 1.00970 0.98067 0.97457 1.23112 1.00851 0.91059 0.93735 1.63093 1.25364 1.36665 1.04536 0.92631 0.95875 0.94330 0.92445 0.92159 0.92252 0.92278 0.92120 0.91543 0.92617 0.86783 0.91972 0.91464 0.90911 0.91555 0.85059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.34 13.96 55.43 0.77 -25.57 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 20.90 27.36 -169.99 -4.65 16.25 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.26 -6.15 6.70 56.52 0.38 -5.77 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.55 -14.50 6.54 -34.44 -0.23 -14.73 16 8 H 0.08 2.24 6.25 -52.48 -0.33 1.91 16 9 C 0.13 3.13 3.56 -4.98 -0.02 3.11 16 10 N -0.51 -10.53 5.22 -224.06 -1.17 -11.70 16 11 C 0.04 0.75 6.39 -2.75 -0.02 0.73 16 12 C -0.13 -2.12 6.93 -25.37 -0.18 -2.30 16 13 C -0.11 -1.85 6.18 -24.87 -0.15 -2.01 16 14 C 0.06 1.15 1.53 -65.79 -0.10 1.05 16 15 H 0.08 1.84 5.50 -51.93 -0.29 1.55 16 16 C 0.10 1.72 3.15 -66.64 -0.21 1.51 16 17 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 18 C -0.17 -3.13 5.32 -25.37 -0.14 -3.26 16 19 C -0.16 -2.56 7.06 -24.87 -0.18 -2.74 16 20 C 0.04 0.61 7.55 -1.74 -0.01 0.59 16 21 N -0.67 -10.61 7.13 -102.91 -0.73 -11.35 16 22 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 23 H 0.02 0.56 7.52 -51.93 -0.39 0.17 16 24 H 0.04 0.91 4.51 -51.93 -0.23 0.67 16 25 H 0.06 1.23 6.91 -51.93 -0.36 0.87 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.07 8.06 -51.93 -0.42 0.65 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.11 2.53 3.91 -51.93 -0.20 2.33 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.33 5.27 8.37 -39.29 -0.33 4.94 16 LS Contribution 275.04 15.07 4.14 4.14 Total: -1.00 -27.66 275.04 -8.89 -36.55 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.93 Total: 7.73 kcal Atomic # 6 Polarization: -14.73 SS G_CDS: -1.32 Total: -16.05 kcal Atomic # 7 Polarization: -47.49 SS G_CDS: -1.13 Total: -48.62 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.65 Total: 16.25 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.66 -8.89 -36.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051360218.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.786 kcal (2) G-P(sol) polarization free energy of solvation -27.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds