Wall clock time and date at job start Mon Mar 30 2020 03:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00221 * 2 1 4 4 H 1.48501 * 109.47049 * 239.99747 * 3 2 1 5 5 H 1.48507 * 109.46799 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47607 * 119.99562 * 3 2 1 7 7 C 1.37878 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00207 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99846 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47164 * 174.64182 * 9 7 2 11 11 C 1.47903 * 111.00338 * 63.82709 * 10 9 7 12 12 C 1.53996 * 107.06055 * 214.15548 * 11 10 9 13 13 C 1.54594 * 105.13781 * 1.22888 * 12 11 10 14 14 C 1.48540 * 110.99938 * 306.43041 * 10 9 7 15 15 H 1.08997 * 110.66442 * 41.29177 * 14 10 9 16 16 C 1.52998 * 110.66849 * 278.15750 * 14 10 9 17 17 H 1.08993 * 109.87991 * 65.19527 * 16 14 10 18 18 C 1.54319 * 109.89014 * 303.99487 * 16 14 10 19 19 C 1.55138 * 103.01842 * 218.31218 * 18 16 14 20 20 C 1.54901 * 101.65398 * 35.65523 * 19 18 16 21 21 N 1.47441 * 109.88922 * 186.22718 * 16 14 10 22 22 H 0.96994 * 120.00129 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47080 * 294.63583 * 9 7 2 24 24 H 1.08999 * 109.47077 * 54.64058 * 9 7 2 25 25 H 1.08993 * 109.91522 * 333.51023 * 11 10 9 26 26 H 1.08997 * 109.91315 * 94.60726 * 11 10 9 27 27 H 1.09003 * 110.30684 * 120.14156 * 12 11 10 28 28 H 1.08995 * 110.31190 * 242.20926 * 12 11 10 29 29 H 1.08993 * 110.72588 * 140.31715 * 13 12 11 30 30 H 1.09009 * 110.72078 * 263.59726 * 13 12 11 31 31 H 1.09010 * 110.70399 * 336.69583 * 18 16 14 32 32 H 1.09005 * 110.70384 * 99.92514 * 18 16 14 33 33 H 1.09004 * 110.98984 * 277.55798 * 19 18 16 34 34 H 1.08999 * 110.98617 * 153.74666 * 19 18 16 35 35 H 1.09004 * 110.37106 * 204.10255 * 20 19 18 36 36 H 1.08996 * 110.47128 * 81.80483 * 20 19 18 37 37 H 1.00906 * 110.99715 * 356.14663 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2004 -3.6127 -0.1282 11 6 3.1049 -3.6759 1.0403 12 6 4.4721 -4.1650 0.5274 13 6 4.2915 -4.3415 -0.9977 14 6 3.0795 -3.4286 -1.3112 15 1 3.3939 -2.3886 -1.3988 16 6 2.3718 -3.8897 -2.5869 17 1 1.5119 -3.2501 -2.7855 18 6 1.9156 -5.3559 -2.4336 19 6 2.1750 -5.9518 -3.8423 20 6 3.4667 -5.2079 -4.2637 21 7 3.3073 -3.8402 -3.7254 22 1 -0.4850 0.8400 -0.0004 23 1 0.6980 -2.5994 0.9345 24 1 0.5547 -2.5166 -0.8378 25 1 3.2074 -2.6859 1.4845 26 1 2.7102 -4.3746 1.7779 27 1 5.2417 -3.4210 0.7336 28 1 4.7322 -5.1161 0.9918 29 1 5.1784 -4.0026 -1.5330 30 1 4.0657 -5.3797 -1.2418 31 1 2.5149 -5.8694 -1.6815 32 1 0.8559 -5.4056 -2.1831 33 1 1.3532 -5.7223 -4.5206 34 1 2.3443 -7.0271 -3.7862 35 1 3.5516 -5.1806 -5.3501 36 1 4.3426 -5.6878 -3.8272 37 1 4.1973 -3.4557 -3.4456 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051360219.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:05 Heat of formation + Delta-G solvation = 1.163277 kcal Electronic energy + Delta-G solvation = -16485.749837 eV Core-core repulsion = 14069.261214 eV Total energy + Delta-G solvation = -2416.488623 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.36228 -36.82905 -33.04811 -30.86087 -30.20113 -29.59212 -26.32698 -25.83746 -22.84546 -21.46838 -20.83831 -19.89693 -18.66112 -16.67093 -15.66847 -15.49046 -15.16862 -14.48639 -13.90189 -13.35036 -13.19287 -13.00858 -12.47516 -12.13190 -12.02496 -11.60503 -11.17521 -11.02918 -10.89960 -10.82897 -10.74832 -10.62860 -10.43452 -10.19966 -10.08820 -9.87314 -9.64136 -9.57381 -8.42713 -8.00491 -7.23824 -6.02764 -4.11046 3.28831 3.34008 3.36021 4.40684 4.54641 5.00416 5.08810 5.16157 5.25923 5.28036 5.34038 5.44366 5.64732 5.68804 5.90002 5.94104 6.00298 6.06772 6.15676 6.23290 6.25072 6.31855 6.47119 6.61340 6.66841 6.82417 6.84927 6.95707 7.17895 7.34760 7.53266 7.73394 7.90538 8.05073 8.18625 8.30170 8.98472 9.54902 11.02812 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.028747 B = 0.008980 C = 0.008226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.780697 B = 3117.137557 C = 3402.833237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.888 3.112 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.178 3.822 10 N -0.513 5.513 11 C 0.038 3.962 12 C -0.126 4.126 13 C -0.128 4.128 14 C 0.054 3.946 15 H 0.076 0.924 16 C 0.096 3.904 17 H 0.085 0.915 18 C -0.122 4.122 19 C -0.134 4.134 20 C 0.046 3.954 21 N -0.679 5.679 22 H 0.263 0.737 23 H 0.025 0.975 24 H 0.036 0.964 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.035 0.965 37 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.189 -9.847 -4.014 12.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.715 3.285 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.587 4.587 8 H 0.075 0.925 9 C 0.052 3.948 10 N -0.237 5.237 11 C -0.091 4.091 12 C -0.165 4.165 13 C -0.166 4.166 14 C -0.056 4.056 15 H 0.094 0.906 16 C -0.014 4.014 17 H 0.103 0.897 18 C -0.160 4.160 19 C -0.172 4.172 20 C -0.083 4.083 21 N -0.309 5.309 22 H 0.072 0.928 23 H 0.044 0.956 24 H 0.055 0.945 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 6.206 -9.975 -4.534 12.592 hybrid contribution 1.453 1.476 0.871 2.247 sum 7.659 -8.498 -3.663 12.012 Atomic orbital electron populations 1.69928 1.05999 1.26930 1.49868 1.24948 0.94752 0.99078 0.94875 0.86728 0.79737 0.83417 0.78586 1.20172 1.21184 1.20371 1.21648 0.93124 0.92044 1.51902 0.92527 1.19847 0.91479 0.85781 0.97674 1.65021 1.14092 1.44225 1.00321 1.22708 0.91076 1.00523 0.94779 1.22332 0.98091 1.00271 0.95764 1.22653 0.97719 1.00266 0.95987 1.23145 0.91684 0.98715 0.92058 0.90630 1.22045 0.95505 0.96158 0.87668 0.89655 1.22727 1.02246 0.95591 0.95466 1.22748 0.97695 0.98828 0.97970 1.22781 0.96724 0.89182 0.99611 1.62113 1.15540 1.20273 1.32930 0.92753 0.95645 0.94549 0.92375 0.92279 0.92384 0.92361 0.92633 0.91326 0.90823 0.91086 0.91227 0.91705 0.91225 0.94636 0.84872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 3 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.55 -14.88 6.92 -34.44 -0.24 -15.12 16 8 H 0.06 1.52 6.05 -52.49 -0.32 1.20 16 9 C 0.18 4.56 5.11 -4.98 -0.03 4.54 16 10 N -0.51 -10.80 4.78 -224.06 -1.07 -11.87 16 11 C 0.04 0.73 6.35 -2.75 -0.02 0.71 16 12 C -0.13 -2.01 6.93 -25.37 -0.18 -2.19 16 13 C -0.13 -2.01 5.70 -24.87 -0.14 -2.16 16 14 C 0.05 1.03 1.77 -65.78 -0.12 0.91 16 15 H 0.08 1.68 5.89 -51.93 -0.31 1.38 16 16 C 0.10 1.72 3.45 -66.73 -0.23 1.49 16 17 H 0.09 1.82 7.74 -51.93 -0.40 1.42 16 18 C -0.12 -1.91 5.78 -24.91 -0.14 -2.06 16 19 C -0.13 -1.76 7.08 -24.60 -0.17 -1.94 16 20 C 0.05 0.61 7.57 -2.30 -0.02 0.59 16 21 N -0.68 -10.77 7.19 -103.82 -0.75 -11.52 16 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.04 1.01 7.71 -51.93 -0.40 0.61 16 25 H 0.06 1.26 6.49 -51.93 -0.34 0.92 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.79 7.76 -51.93 -0.40 0.39 16 30 H 0.07 1.03 5.82 -51.92 -0.30 0.73 16 31 H 0.07 1.16 5.72 -51.92 -0.30 0.86 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.33 5.07 7.45 -39.29 -0.29 4.78 16 LS Contribution 280.42 15.07 4.23 4.23 Total: -1.00 -28.22 280.42 -9.25 -37.47 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -6.00 Total: 4.12 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -1.38 Total: -13.46 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -1.08 Total: -48.81 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.22 -9.25 -37.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051360219.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.630 kcal (2) G-P(sol) polarization free energy of solvation -28.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds