Wall clock time and date at job start Mon Mar 30 2020 03:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00221 * 2 1 4 4 H 1.48501 * 109.47049 * 239.99747 * 3 2 1 5 5 H 1.48507 * 109.46799 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47607 * 119.99562 * 3 2 1 7 7 C 1.37878 * 120.00127 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00207 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99846 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.47164 * 174.64182 * 9 7 2 11 11 C 1.47903 * 111.00338 * 63.82709 * 10 9 7 12 12 C 1.53996 * 107.06055 * 214.15548 * 11 10 9 13 13 C 1.54594 * 105.13781 * 1.22888 * 12 11 10 14 14 C 1.48540 * 110.99938 * 306.43041 * 10 9 7 15 15 H 1.08997 * 110.66442 * 41.29177 * 14 10 9 16 16 C 1.52998 * 110.66849 * 278.15750 * 14 10 9 17 17 H 1.08993 * 109.87991 * 65.19527 * 16 14 10 18 18 C 1.54319 * 109.89014 * 303.99487 * 16 14 10 19 19 C 1.55138 * 103.01842 * 218.31218 * 18 16 14 20 20 C 1.54901 * 101.65398 * 35.65523 * 19 18 16 21 21 N 1.47441 * 109.88922 * 186.22718 * 16 14 10 22 22 H 0.96994 * 120.00129 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47080 * 294.63583 * 9 7 2 24 24 H 1.08999 * 109.47077 * 54.64058 * 9 7 2 25 25 H 1.08993 * 109.91522 * 333.51023 * 11 10 9 26 26 H 1.08997 * 109.91315 * 94.60726 * 11 10 9 27 27 H 1.09003 * 110.30684 * 120.14156 * 12 11 10 28 28 H 1.08995 * 110.31190 * 242.20926 * 12 11 10 29 29 H 1.08993 * 110.72588 * 140.31715 * 13 12 11 30 30 H 1.09009 * 110.72078 * 263.59726 * 13 12 11 31 31 H 1.09010 * 110.70399 * 336.69583 * 18 16 14 32 32 H 1.09005 * 110.70384 * 99.92514 * 18 16 14 33 33 H 1.09004 * 110.98984 * 277.55798 * 19 18 16 34 34 H 1.08999 * 110.98617 * 153.74666 * 19 18 16 35 35 H 1.09004 * 110.37106 * 204.10255 * 20 19 18 36 36 H 1.08996 * 110.47128 * 81.80483 * 20 19 18 37 37 H 1.00906 * 110.99715 * 356.14663 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2004 -3.6127 -0.1282 11 6 3.1049 -3.6759 1.0403 12 6 4.4721 -4.1650 0.5274 13 6 4.2915 -4.3415 -0.9977 14 6 3.0795 -3.4286 -1.3112 15 1 3.3939 -2.3886 -1.3988 16 6 2.3718 -3.8897 -2.5869 17 1 1.5119 -3.2501 -2.7855 18 6 1.9156 -5.3559 -2.4336 19 6 2.1750 -5.9518 -3.8423 20 6 3.4667 -5.2079 -4.2637 21 7 3.3073 -3.8402 -3.7254 22 1 -0.4850 0.8400 -0.0004 23 1 0.6980 -2.5994 0.9345 24 1 0.5547 -2.5166 -0.8378 25 1 3.2074 -2.6859 1.4845 26 1 2.7102 -4.3746 1.7779 27 1 5.2417 -3.4210 0.7336 28 1 4.7322 -5.1161 0.9918 29 1 5.1784 -4.0026 -1.5330 30 1 4.0657 -5.3797 -1.2418 31 1 2.5149 -5.8694 -1.6815 32 1 0.8559 -5.4056 -2.1831 33 1 1.3532 -5.7223 -4.5206 34 1 2.3443 -7.0271 -3.7862 35 1 3.5516 -5.1806 -5.3501 36 1 4.3426 -5.6878 -3.8272 37 1 4.1973 -3.4557 -3.4456 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051360219.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:05 Heat of formation + Delta-G solvation = -19.003644 kcal Electronic energy + Delta-G solvation = -16486.624340 eV Core-core repulsion = 14069.261214 eV Total energy + Delta-G solvation = -2417.363126 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.81226 -38.24642 -35.08006 -32.62522 -31.49318 -30.87623 -28.18050 -27.34844 -24.73605 -22.91017 -21.95672 -21.44127 -20.20756 -18.57176 -17.24374 -16.99529 -16.55342 -16.22128 -15.45165 -14.94079 -14.72197 -14.44584 -14.19269 -13.75532 -13.37248 -12.96200 -12.84258 -12.73886 -12.60207 -12.32430 -12.08810 -12.02595 -11.97462 -11.86158 -11.72785 -11.59151 -11.39893 -11.00148 -10.61522 -9.27671 -9.06491 -8.17404 -6.35566 1.34176 1.36228 1.43826 2.35152 3.07789 3.21029 3.61996 3.78262 3.89929 3.98862 4.03101 4.20319 4.28608 4.48819 4.57105 4.67773 4.71766 4.82183 4.94420 4.98395 5.07072 5.09882 5.12375 5.13363 5.23044 5.27017 5.33569 5.36867 5.47140 5.55326 5.71962 5.98793 6.07131 6.29214 6.39263 6.55633 6.85115 7.34596 8.85845 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.028747 B = 0.008980 C = 0.008226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.780697 B = 3117.137557 C = 3402.833237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.956 3.044 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.551 4.551 8 H 0.058 0.942 9 C 0.196 3.804 10 N -0.512 5.512 11 C 0.032 3.968 12 C -0.118 4.118 13 C -0.115 4.115 14 C 0.054 3.946 15 H 0.039 0.961 16 C 0.100 3.900 17 H 0.035 0.965 18 C -0.118 4.118 19 C -0.127 4.127 20 C 0.047 3.953 21 N -0.689 5.689 22 H 0.264 0.736 23 H -0.003 1.003 24 H 0.003 0.997 25 H 0.029 0.971 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.775 -11.191 -4.571 15.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.781 3.219 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.589 4.589 8 H 0.076 0.924 9 C 0.068 3.932 10 N -0.235 5.235 11 C -0.096 4.096 12 C -0.156 4.156 13 C -0.153 4.153 14 C -0.056 4.056 15 H 0.057 0.943 16 C -0.010 4.010 17 H 0.053 0.947 18 C -0.156 4.156 19 C -0.164 4.164 20 C -0.081 4.081 21 N -0.320 5.320 22 H 0.073 0.927 23 H 0.015 0.985 24 H 0.021 0.979 25 H 0.047 0.953 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.108 0.892 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.815 -11.337 -5.096 15.237 hybrid contribution 0.619 1.859 1.031 2.214 sum 9.434 -9.478 -4.064 13.976 Atomic orbital electron populations 1.70064 1.07621 1.27860 1.51087 1.25833 0.95616 1.02898 0.94613 0.85639 0.78465 0.78870 0.78944 1.19531 1.20738 1.19341 1.21884 0.93241 0.92776 1.51045 0.92362 1.19426 0.91829 0.87291 0.94621 1.64951 1.14756 1.41636 1.02204 1.22795 0.93123 0.99473 0.94256 1.22313 0.95622 1.01886 0.95785 1.22607 0.96485 1.00140 0.96044 1.23123 0.92998 0.97845 0.91651 0.94269 1.21783 0.94487 0.96773 0.87949 0.94717 1.22647 1.01143 0.94141 0.97668 1.22743 0.97651 1.00427 0.95627 1.22901 0.97367 0.87428 1.00453 1.62009 1.15503 1.22658 1.31807 0.92680 0.98500 0.97920 0.95299 0.91232 0.91693 0.89247 0.90317 0.89654 0.90019 0.92911 0.91797 0.88782 0.89810 0.92401 0.84295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 2 C 0.01 0.56 5.46 84.65 0.46 1.02 16 3 Si 0.96 44.79 29.54 68.60 2.03 46.81 16 4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.55 -31.02 6.92 25.60 0.18 -30.84 16 8 H 0.06 3.21 6.05 -2.91 -0.02 3.19 16 9 C 0.20 10.61 5.11 85.56 0.44 11.04 16 10 N -0.51 -22.09 4.78 -862.79 -4.12 -26.21 16 11 C 0.03 1.22 6.35 86.45 0.55 1.77 16 12 C -0.12 -3.40 6.93 31.47 0.22 -3.19 16 13 C -0.11 -3.26 5.70 31.80 0.18 -3.08 16 14 C 0.05 2.05 1.77 45.26 0.08 2.13 16 15 H 0.04 1.79 5.89 -2.39 -0.01 1.77 16 16 C 0.10 3.65 3.45 45.26 0.16 3.80 16 17 H 0.03 1.59 7.74 -2.39 -0.02 1.57 16 18 C -0.12 -3.58 5.78 31.77 0.18 -3.40 16 19 C -0.13 -2.99 7.08 31.98 0.23 -2.77 16 20 C 0.05 1.08 7.57 86.77 0.66 1.74 16 21 N -0.69 -21.00 7.19 -482.39 -3.47 -24.47 16 22 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 23 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 24 H 0.00 0.16 7.71 -2.39 -0.02 0.14 16 25 H 0.03 1.26 6.49 -2.39 -0.02 1.25 16 26 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 29 H 0.08 1.92 7.76 -2.39 -0.02 1.90 16 30 H 0.09 2.18 5.82 -2.38 -0.01 2.17 16 31 H 0.08 2.36 5.72 -2.38 -0.01 2.34 16 32 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.34 9.67 7.45 -89.69 -0.67 9.00 16 Total: -1.00 -63.86 280.42 -1.58 -65.44 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.38 Total: 16.52 kcal Atomic # 6 Polarization: -25.10 SS G_CDS: 3.33 Total: -21.77 kcal Atomic # 7 Polarization: -99.70 SS G_CDS: -7.31 Total: -107.00 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -63.86 -1.58 -65.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051360219.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.436 kcal (2) G-P(sol) polarization free energy of solvation -63.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds