Wall clock time and date at job start Mon Mar 30 2020 03:33:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31514 * 1
3 3 Si 1.86798 * 120.00221 * 2 1
4 4 H 1.48501 * 109.47049 * 239.99747 * 3 2 1
5 5 H 1.48507 * 109.46799 * 359.97438 * 3 2 1
6 6 H 1.48492 * 109.47607 * 119.99562 * 3 2 1
7 7 C 1.37878 * 120.00127 * 179.97438 * 2 1 3
8 8 H 1.07994 * 120.00207 * 179.97438 * 7 2 1
9 9 C 1.50703 * 119.99846 * 0.02562 * 7 2 1
10 10 N 1.46896 * 109.47164 * 174.64182 * 9 7 2
11 11 C 1.47903 * 111.00338 * 63.82709 * 10 9 7
12 12 C 1.53996 * 107.06055 * 214.15548 * 11 10 9
13 13 C 1.54594 * 105.13781 * 1.22888 * 12 11 10
14 14 C 1.48540 * 110.99938 * 306.43041 * 10 9 7
15 15 H 1.08997 * 110.66442 * 41.29177 * 14 10 9
16 16 C 1.52998 * 110.66849 * 278.15750 * 14 10 9
17 17 H 1.08993 * 109.87991 * 65.19527 * 16 14 10
18 18 C 1.54319 * 109.89014 * 303.99487 * 16 14 10
19 19 C 1.55138 * 103.01842 * 218.31218 * 18 16 14
20 20 C 1.54901 * 101.65398 * 35.65523 * 19 18 16
21 21 N 1.47441 * 109.88922 * 186.22718 * 16 14 10
22 22 H 0.96994 * 120.00129 * 0.02562 * 1 2 3
23 23 H 1.09001 * 109.47080 * 294.63583 * 9 7 2
24 24 H 1.08999 * 109.47077 * 54.64058 * 9 7 2
25 25 H 1.08993 * 109.91522 * 333.51023 * 11 10 9
26 26 H 1.08997 * 109.91315 * 94.60726 * 11 10 9
27 27 H 1.09003 * 110.30684 * 120.14156 * 12 11 10
28 28 H 1.08995 * 110.31190 * 242.20926 * 12 11 10
29 29 H 1.08993 * 110.72588 * 140.31715 * 13 12 11
30 30 H 1.09009 * 110.72078 * 263.59726 * 13 12 11
31 31 H 1.09010 * 110.70399 * 336.69583 * 18 16 14
32 32 H 1.09005 * 110.70384 * 99.92514 * 18 16 14
33 33 H 1.09004 * 110.98984 * 277.55798 * 19 18 16
34 34 H 1.08999 * 110.98617 * 153.74666 * 19 18 16
35 35 H 1.09004 * 110.37106 * 204.10255 * 20 19 18
36 36 H 1.08996 * 110.47128 * 81.80483 * 20 19 18
37 37 H 1.00906 * 110.99715 * 356.14663 * 21 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.1030 1.6963 -1.2125
5 1 1.2841 2.7464 -0.0006
6 1 3.1029 1.6965 1.2124
7 6 2.0046 -1.1940 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4992 0.0005
10 7 2.2004 -3.6127 -0.1282
11 6 3.1049 -3.6759 1.0403
12 6 4.4721 -4.1650 0.5274
13 6 4.2915 -4.3415 -0.9977
14 6 3.0795 -3.4286 -1.3112
15 1 3.3939 -2.3886 -1.3988
16 6 2.3718 -3.8897 -2.5869
17 1 1.5119 -3.2501 -2.7855
18 6 1.9156 -5.3559 -2.4336
19 6 2.1750 -5.9518 -3.8423
20 6 3.4667 -5.2079 -4.2637
21 7 3.3073 -3.8402 -3.7254
22 1 -0.4850 0.8400 -0.0004
23 1 0.6980 -2.5994 0.9345
24 1 0.5547 -2.5166 -0.8378
25 1 3.2074 -2.6859 1.4845
26 1 2.7102 -4.3746 1.7779
27 1 5.2417 -3.4210 0.7336
28 1 4.7322 -5.1161 0.9918
29 1 5.1784 -4.0026 -1.5330
30 1 4.0657 -5.3797 -1.2418
31 1 2.5149 -5.8694 -1.6815
32 1 0.8559 -5.4056 -2.1831
33 1 1.3532 -5.7223 -4.5206
34 1 2.3443 -7.0271 -3.7862
35 1 3.5516 -5.1806 -5.3501
36 1 4.3426 -5.6878 -3.8272
37 1 4.1973 -3.4557 -3.4456
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000051360219.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:33:05
Heat of formation + Delta-G solvation = -19.003644 kcal
Electronic energy + Delta-G solvation = -16486.624340 eV
Core-core repulsion = 14069.261214 eV
Total energy + Delta-G solvation = -2417.363126 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 224.158 amu
Computer time = 0.30 seconds
Orbital eigenvalues (eV)
-40.81226 -38.24642 -35.08006 -32.62522 -31.49318 -30.87623 -28.18050 -27.34844
-24.73605 -22.91017 -21.95672 -21.44127 -20.20756 -18.57176 -17.24374 -16.99529
-16.55342 -16.22128 -15.45165 -14.94079 -14.72197 -14.44584 -14.19269 -13.75532
-13.37248 -12.96200 -12.84258 -12.73886 -12.60207 -12.32430 -12.08810 -12.02595
-11.97462 -11.86158 -11.72785 -11.59151 -11.39893 -11.00148 -10.61522 -9.27671
-9.06491 -8.17404 -6.35566 1.34176 1.36228 1.43826 2.35152 3.07789
3.21029 3.61996 3.78262 3.89929 3.98862 4.03101 4.20319 4.28608
4.48819 4.57105 4.67773 4.71766 4.82183 4.94420 4.98395 5.07072
5.09882 5.12375 5.13363 5.23044 5.27017 5.33569 5.36867 5.47140
5.55326 5.71962 5.98793 6.07131 6.29214 6.39263 6.55633 6.85115
7.34596 8.85845
Molecular weight = 224.16amu
Principal moments of inertia in cm(-1)
A = 0.028747 B = 0.008980 C = 0.008226
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 973.780697 B = 3117.137557 C = 3402.833237
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.927 5.927
2 C 0.010 3.990
3 Si 0.956 3.044
4 H -0.270 1.270
5 H -0.282 1.282
6 H -0.268 1.268
7 C -0.551 4.551
8 H 0.058 0.942
9 C 0.196 3.804
10 N -0.512 5.512
11 C 0.032 3.968
12 C -0.118 4.118
13 C -0.115 4.115
14 C 0.054 3.946
15 H 0.039 0.961
16 C 0.100 3.900
17 H 0.035 0.965
18 C -0.118 4.118
19 C -0.127 4.127
20 C 0.047 3.953
21 N -0.689 5.689
22 H 0.264 0.736
23 H -0.003 1.003
24 H 0.003 0.997
25 H 0.029 0.971
26 H 0.069 0.931
27 H 0.064 0.936
28 H 0.089 0.911
29 H 0.078 0.922
30 H 0.085 0.915
31 H 0.081 0.919
32 H 0.052 0.948
33 H 0.063 0.937
34 H 0.094 0.906
35 H 0.084 0.916
36 H 0.058 0.942
37 H 0.340 0.660
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.775 -11.191 -4.571 15.546
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.566 5.566
2 C -0.190 4.190
3 Si 0.781 3.219
4 H -0.195 1.195
5 H -0.207 1.207
6 H -0.193 1.193
7 C -0.589 4.589
8 H 0.076 0.924
9 C 0.068 3.932
10 N -0.235 5.235
11 C -0.096 4.096
12 C -0.156 4.156
13 C -0.153 4.153
14 C -0.056 4.056
15 H 0.057 0.943
16 C -0.010 4.010
17 H 0.053 0.947
18 C -0.156 4.156
19 C -0.164 4.164
20 C -0.081 4.081
21 N -0.320 5.320
22 H 0.073 0.927
23 H 0.015 0.985
24 H 0.021 0.979
25 H 0.047 0.953
26 H 0.088 0.912
27 H 0.083 0.917
28 H 0.108 0.892
29 H 0.097 0.903
30 H 0.103 0.897
31 H 0.100 0.900
32 H 0.071 0.929
33 H 0.082 0.918
34 H 0.112 0.888
35 H 0.102 0.898
36 H 0.076 0.924
37 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges 8.815 -11.337 -5.096 15.237
hybrid contribution 0.619 1.859 1.031 2.214
sum 9.434 -9.478 -4.064 13.976
Atomic orbital electron populations
1.70064 1.07621 1.27860 1.51087 1.25833 0.95616 1.02898 0.94613
0.85639 0.78465 0.78870 0.78944 1.19531 1.20738 1.19341 1.21884
0.93241 0.92776 1.51045 0.92362 1.19426 0.91829 0.87291 0.94621
1.64951 1.14756 1.41636 1.02204 1.22795 0.93123 0.99473 0.94256
1.22313 0.95622 1.01886 0.95785 1.22607 0.96485 1.00140 0.96044
1.23123 0.92998 0.97845 0.91651 0.94269 1.21783 0.94487 0.96773
0.87949 0.94717 1.22647 1.01143 0.94141 0.97668 1.22743 0.97651
1.00427 0.95627 1.22901 0.97367 0.87428 1.00453 1.62009 1.15503
1.22658 1.31807 0.92680 0.98500 0.97920 0.95299 0.91232 0.91693
0.89247 0.90317 0.89654 0.90019 0.92911 0.91797 0.88782 0.89810
0.92401 0.84295
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16
2 C 0.01 0.56 5.46 84.65 0.46 1.02 16
3 Si 0.96 44.79 29.54 68.60 2.03 46.81 16
4 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16
5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16
6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16
7 C -0.55 -31.02 6.92 25.60 0.18 -30.84 16
8 H 0.06 3.21 6.05 -2.91 -0.02 3.19 16
9 C 0.20 10.61 5.11 85.56 0.44 11.04 16
10 N -0.51 -22.09 4.78 -862.79 -4.12 -26.21 16
11 C 0.03 1.22 6.35 86.45 0.55 1.77 16
12 C -0.12 -3.40 6.93 31.47 0.22 -3.19 16
13 C -0.11 -3.26 5.70 31.80 0.18 -3.08 16
14 C 0.05 2.05 1.77 45.26 0.08 2.13 16
15 H 0.04 1.79 5.89 -2.39 -0.01 1.77 16
16 C 0.10 3.65 3.45 45.26 0.16 3.80 16
17 H 0.03 1.59 7.74 -2.39 -0.02 1.57 16
18 C -0.12 -3.58 5.78 31.77 0.18 -3.40 16
19 C -0.13 -2.99 7.08 31.98 0.23 -2.77 16
20 C 0.05 1.08 7.57 86.77 0.66 1.74 16
21 N -0.69 -21.00 7.19 -482.39 -3.47 -24.47 16
22 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16
23 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16
24 H 0.00 0.16 7.71 -2.39 -0.02 0.14 16
25 H 0.03 1.26 6.49 -2.39 -0.02 1.25 16
26 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16
27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16
28 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16
29 H 0.08 1.92 7.76 -2.39 -0.02 1.90 16
30 H 0.09 2.18 5.82 -2.38 -0.01 2.17 16
31 H 0.08 2.36 5.72 -2.38 -0.01 2.34 16
32 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16
33 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16
34 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16
35 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16
36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16
37 H 0.34 9.67 7.45 -89.69 -0.67 9.00 16
Total: -1.00 -63.86 280.42 -1.58 -65.44
By element:
Atomic # 1 Polarization: 16.14 SS G_CDS: 0.38 Total: 16.52 kcal
Atomic # 6 Polarization: -25.10 SS G_CDS: 3.33 Total: -21.77 kcal
Atomic # 7 Polarization: -99.70 SS G_CDS: -7.31 Total: -107.00 kcal
Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal
Total: -63.86 -1.58 -65.44 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000051360219.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.436 kcal
(2) G-P(sol) polarization free energy of solvation -63.864 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.428 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.575 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.440 kcal
(6) G-S(sol) free energy of system = (1) + (5) -19.004 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.30 seconds