Wall clock time and date at job start Mon Mar 30 2020 03:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99849 * 2 1 4 4 H 1.48498 * 109.47072 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46794 * 120.00008 * 3 2 1 6 6 H 1.48493 * 109.46973 * 239.99495 * 3 2 1 7 7 C 1.37876 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99659 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46828 * 179.97438 * 9 7 2 11 11 C 1.47447 * 111.00043 * 64.68713 * 10 9 7 12 12 C 1.54316 * 107.23368 * 123.25675 * 11 10 9 13 13 C 1.55138 * 103.01960 * 22.28580 * 12 11 10 14 14 C 1.47844 * 111.00167 * 185.52917 * 10 9 7 15 15 H 1.09001 * 110.37300 * 332.46778 * 14 10 9 16 16 C 1.53001 * 110.37369 * 94.80460 * 14 10 9 17 17 H 1.08997 * 110.36241 * 56.18329 * 16 14 10 18 18 C 1.54375 * 110.41430 * 293.83373 * 16 14 10 19 19 C 1.54255 * 105.06215 * 217.37024 * 18 16 14 20 20 C 1.54387 * 105.06102 * 359.97438 * 19 18 16 21 21 N 1.48555 * 110.41081 * 178.65536 * 16 14 10 22 22 H 0.96995 * 120.00272 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47185 * 299.98887 * 9 7 2 24 24 H 1.08997 * 109.47803 * 59.99847 * 9 7 2 25 25 H 1.09002 * 109.88897 * 242.66661 * 11 10 9 26 26 H 1.09003 * 109.88443 * 3.85299 * 11 10 9 27 27 H 1.08997 * 110.70553 * 140.66954 * 12 11 10 28 28 H 1.09003 * 110.70616 * 263.90212 * 12 11 10 29 29 H 1.09002 * 110.99250 * 82.43643 * 13 12 11 30 30 H 1.09004 * 110.99193 * 206.25910 * 13 12 11 31 31 H 1.09006 * 110.32442 * 336.26000 * 18 16 14 32 32 H 1.09001 * 110.32775 * 98.36851 * 18 16 14 33 33 H 1.08998 * 110.33314 * 118.89095 * 19 18 16 34 34 H 1.09005 * 110.32397 * 241.00337 * 19 18 16 35 35 H 1.08995 * 110.41029 * 142.63402 * 20 19 18 36 36 H 1.09001 * 110.41567 * 264.96186 * 20 19 18 37 37 H 1.00897 * 111.00483 * 277.82149 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9964 -3.6348 1.2449 12 6 2.7909 -5.0188 1.8959 13 6 2.3523 -5.9055 0.7008 14 6 1.5058 -4.9111 -0.1325 15 1 0.4962 -4.8403 0.2723 16 6 1.4637 -5.3458 -1.5988 17 1 2.4721 -5.3906 -2.0102 18 6 0.5887 -4.3770 -2.4228 19 6 -0.1500 -5.2707 -3.4402 20 6 0.3414 -6.7043 -3.1458 21 7 0.7892 -6.6629 -1.7297 22 1 -0.4850 -0.8400 0.0004 23 1 0.6242 -2.5567 0.8904 24 1 0.6246 -2.5571 -0.8896 25 1 4.0516 -3.4856 1.0161 26 1 2.6465 -2.8526 1.9186 27 1 3.7234 -5.3848 2.3255 28 1 2.0073 -4.9764 2.6524 29 1 3.2164 -6.2528 0.1344 30 1 1.7461 -6.7457 1.0397 31 1 -0.1266 -3.8693 -1.7755 32 1 1.2137 -3.6488 -2.9398 33 1 -1.2277 -5.2018 -3.2924 34 1 0.1112 -4.9812 -4.4581 35 1 -0.4739 -7.4177 -3.2657 36 1 1.1721 -6.9638 -3.8021 37 1 1.4282 -7.4179 -1.5304 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051360221.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:10 Heat of formation + Delta-G solvation = -4.031523 kcal Electronic energy + Delta-G solvation = -16237.281525 eV Core-core repulsion = 13820.567639 eV Total energy + Delta-G solvation = -2416.713886 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.18076 -37.08554 -33.38283 -30.90367 -30.31035 -29.71592 -26.26885 -25.73427 -22.80170 -21.47807 -20.42016 -20.11886 -19.15554 -16.73126 -16.52309 -15.53037 -15.26221 -14.17129 -13.70492 -13.57877 -12.96060 -12.67844 -12.61476 -12.40843 -12.18136 -11.94171 -11.74506 -11.04180 -10.98738 -10.93654 -10.68256 -10.57226 -10.36896 -10.25286 -10.06044 -9.99465 -9.82595 -8.59069 -8.42609 -8.32881 -7.27913 -6.33095 -4.01170 3.45875 3.48129 3.66741 4.25244 4.56603 4.86157 5.02642 5.12937 5.19063 5.23093 5.30084 5.41335 5.54656 5.56418 5.73283 5.81857 5.91453 6.03606 6.04073 6.12153 6.17676 6.29304 6.31533 6.39728 6.54204 6.62657 6.66423 6.72615 7.03381 7.07018 7.17952 7.46236 7.85915 8.07213 8.36754 8.63262 8.91784 9.69097 11.06000 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.027212 B = 0.008631 C = 0.006958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.708260 B = 3243.307830 C = 4022.901837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.013 3.987 3 Si 1.071 2.929 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.587 4.587 8 H 0.055 0.945 9 C 0.174 3.826 10 N -0.519 5.519 11 C 0.057 3.943 12 C -0.145 4.145 13 C -0.120 4.120 14 C 0.085 3.915 15 H 0.051 0.949 16 C 0.089 3.911 17 H 0.051 0.949 18 C -0.115 4.115 19 C -0.127 4.127 20 C 0.038 3.962 21 N -0.664 5.664 22 H 0.266 0.734 23 H -0.023 1.023 24 H 0.031 0.969 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.035 0.965 37 H 0.331 0.669 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.981 -12.405 -2.583 13.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.190 4.190 3 Si 0.899 3.101 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.626 4.626 8 H 0.073 0.927 9 C 0.048 3.952 10 N -0.244 5.244 11 C -0.071 4.071 12 C -0.183 4.183 13 C -0.159 4.159 14 C -0.024 4.024 15 H 0.069 0.931 16 C -0.021 4.021 17 H 0.069 0.931 18 C -0.153 4.153 19 C -0.165 4.165 20 C -0.091 4.091 21 N -0.293 5.293 22 H 0.076 0.924 23 H -0.005 1.005 24 H 0.049 0.951 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.054 0.946 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.455 -10.480 -2.691 11.095 hybrid contribution 0.515 -1.904 0.182 1.981 sum 2.970 -12.384 -2.509 12.980 Atomic orbital electron populations 1.70793 1.06852 1.30355 1.47147 1.25817 0.96504 1.02620 0.94070 0.83513 0.74808 0.75265 0.76494 1.20870 1.21547 1.21453 1.21984 0.94748 0.91090 1.54728 0.92702 1.20140 0.90947 0.89020 0.95054 1.63339 1.24886 1.01571 1.34575 1.22600 0.98630 0.95051 0.90866 1.22838 1.00759 0.96992 0.97716 1.22669 0.99224 0.97504 0.96460 1.22369 0.96569 0.90230 0.93282 0.93066 1.22295 0.95781 0.88426 0.95600 0.93092 1.22368 0.98741 0.97197 0.97038 1.22337 1.00718 0.94303 0.99137 1.22850 0.99128 0.97831 0.89316 1.63582 1.40231 1.04085 1.21419 0.92355 1.00544 0.95137 0.92011 0.92078 0.91706 0.92127 0.91707 0.91485 0.90667 0.90910 0.91458 0.91810 0.90700 0.94631 0.85480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.09 13.65 55.43 0.76 -27.33 16 2 C 0.01 0.39 5.46 -17.82 -0.10 0.29 16 3 Si 1.07 25.62 29.90 -169.99 -5.08 20.54 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.59 -16.80 8.43 -34.44 -0.29 -17.09 16 8 H 0.05 1.58 7.62 -52.49 -0.40 1.18 16 9 C 0.17 4.54 3.45 -4.97 -0.02 4.52 16 10 N -0.52 -11.40 4.76 -224.81 -1.07 -12.47 16 11 C 0.06 1.14 6.22 -2.83 -0.02 1.12 16 12 C -0.14 -2.32 6.94 -24.91 -0.17 -2.49 16 13 C -0.12 -1.85 6.19 -24.59 -0.15 -2.01 16 14 C 0.08 1.58 2.18 -66.19 -0.14 1.43 16 15 H 0.05 1.06 7.80 -51.93 -0.40 0.65 16 16 C 0.09 1.49 2.87 -66.07 -0.19 1.30 16 17 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 18 C -0.12 -2.05 5.34 -25.35 -0.14 -2.18 16 19 C -0.13 -1.80 7.00 -25.35 -0.18 -1.97 16 20 C 0.04 0.48 7.47 -2.16 -0.02 0.47 16 21 N -0.66 -9.40 7.07 -102.73 -0.73 -10.12 16 22 H 0.27 8.17 7.22 -40.82 -0.29 7.88 16 23 H -0.02 -0.65 7.97 -51.93 -0.41 -1.06 16 24 H 0.03 0.83 5.04 -51.93 -0.26 0.56 16 25 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 26 H 0.06 1.36 7.21 -51.93 -0.37 0.99 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 0.94 8.06 -51.93 -0.42 0.52 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.52 6.11 -51.93 -0.32 1.20 16 32 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.33 4.02 8.82 -39.29 -0.35 3.67 16 LS Contribution 285.52 15.07 4.30 4.30 Total: -1.00 -30.37 285.52 -9.49 -39.86 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -6.26 Total: 1.84 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -1.41 Total: -16.61 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: -1.04 Total: -49.92 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.37 -9.49 -39.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051360221.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.825 kcal (2) G-P(sol) polarization free energy of solvation -30.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds