Wall clock time and date at job start Mon Mar 30 2020 03:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99849 * 2 1 4 4 H 1.48498 * 109.47072 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46794 * 120.00008 * 3 2 1 6 6 H 1.48493 * 109.46973 * 239.99495 * 3 2 1 7 7 C 1.37876 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99674 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99659 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.46828 * 179.97438 * 9 7 2 11 11 C 1.47447 * 111.00043 * 64.68713 * 10 9 7 12 12 C 1.54316 * 107.23368 * 123.25675 * 11 10 9 13 13 C 1.55138 * 103.01960 * 22.28580 * 12 11 10 14 14 C 1.47844 * 111.00167 * 185.52917 * 10 9 7 15 15 H 1.09001 * 110.37300 * 332.46778 * 14 10 9 16 16 C 1.53001 * 110.37369 * 94.80460 * 14 10 9 17 17 H 1.08997 * 110.36241 * 56.18329 * 16 14 10 18 18 C 1.54375 * 110.41430 * 293.83373 * 16 14 10 19 19 C 1.54255 * 105.06215 * 217.37024 * 18 16 14 20 20 C 1.54387 * 105.06102 * 359.97438 * 19 18 16 21 21 N 1.48555 * 110.41081 * 178.65536 * 16 14 10 22 22 H 0.96995 * 120.00272 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47185 * 299.98887 * 9 7 2 24 24 H 1.08997 * 109.47803 * 59.99847 * 9 7 2 25 25 H 1.09002 * 109.88897 * 242.66661 * 11 10 9 26 26 H 1.09003 * 109.88443 * 3.85299 * 11 10 9 27 27 H 1.08997 * 110.70553 * 140.66954 * 12 11 10 28 28 H 1.09003 * 110.70616 * 263.90212 * 12 11 10 29 29 H 1.09002 * 110.99250 * 82.43643 * 13 12 11 30 30 H 1.09004 * 110.99193 * 206.25910 * 13 12 11 31 31 H 1.09006 * 110.32442 * 336.26000 * 18 16 14 32 32 H 1.09001 * 110.32775 * 98.36851 * 18 16 14 33 33 H 1.08998 * 110.33314 * 118.89095 * 19 18 16 34 34 H 1.09005 * 110.32397 * 241.00337 * 19 18 16 35 35 H 1.08995 * 110.41029 * 142.63402 * 20 19 18 36 36 H 1.09001 * 110.41567 * 264.96186 * 20 19 18 37 37 H 1.00897 * 111.00483 * 277.82149 * 21 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2056 -3.6157 0.0005 11 6 2.9964 -3.6348 1.2449 12 6 2.7909 -5.0188 1.8959 13 6 2.3523 -5.9055 0.7008 14 6 1.5058 -4.9111 -0.1325 15 1 0.4962 -4.8403 0.2723 16 6 1.4637 -5.3458 -1.5988 17 1 2.4721 -5.3906 -2.0102 18 6 0.5887 -4.3770 -2.4228 19 6 -0.1500 -5.2707 -3.4402 20 6 0.3414 -6.7043 -3.1458 21 7 0.7892 -6.6629 -1.7297 22 1 -0.4850 -0.8400 0.0004 23 1 0.6242 -2.5567 0.8904 24 1 0.6246 -2.5571 -0.8896 25 1 4.0516 -3.4856 1.0161 26 1 2.6465 -2.8526 1.9186 27 1 3.7234 -5.3848 2.3255 28 1 2.0073 -4.9764 2.6524 29 1 3.2164 -6.2528 0.1344 30 1 1.7461 -6.7457 1.0397 31 1 -0.1266 -3.8693 -1.7755 32 1 1.2137 -3.6488 -2.9398 33 1 -1.2277 -5.2018 -3.2924 34 1 0.1112 -4.9812 -4.4581 35 1 -0.4739 -7.4177 -3.2657 36 1 1.1721 -6.9638 -3.8021 37 1 1.4282 -7.4179 -1.5304 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051360221.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:10 Heat of formation + Delta-G solvation = -26.167805 kcal Electronic energy + Delta-G solvation = -16238.241426 eV Core-core repulsion = 13820.567639 eV Total energy + Delta-G solvation = -2417.673787 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.64143 -38.46671 -35.50040 -32.63650 -31.64639 -31.05097 -27.78429 -27.62446 -24.81610 -22.73236 -22.03360 -21.42185 -20.65283 -18.77702 -17.93650 -16.91792 -16.86318 -15.66510 -15.47435 -15.02181 -14.87121 -14.33900 -14.13449 -13.80181 -13.68636 -13.37420 -12.97276 -12.92712 -12.67632 -12.51487 -12.27250 -12.08647 -11.94213 -11.83162 -11.61383 -11.47263 -11.29586 -10.73333 -10.55983 -9.56975 -9.11082 -8.69155 -6.38989 1.50525 1.59432 1.79049 2.54099 2.93010 3.13487 3.57408 3.65770 3.73542 3.93324 3.94818 4.02316 4.16801 4.24347 4.44347 4.51422 4.59592 4.73077 4.75579 4.82178 4.87768 4.93030 4.96987 5.00873 5.03920 5.06247 5.15159 5.17993 5.27823 5.33985 5.75445 5.84210 6.00664 6.35502 6.40208 6.47948 6.66182 7.41379 8.69077 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.027212 B = 0.008631 C = 0.006958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.708260 B = 3243.307830 C = 4022.901837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.039 4.039 3 Si 1.120 2.880 4 H -0.283 1.283 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.598 4.598 8 H 0.051 0.949 9 C 0.190 3.810 10 N -0.527 5.527 11 C 0.050 3.950 12 C -0.134 4.134 13 C -0.106 4.106 14 C 0.080 3.920 15 H 0.022 0.978 16 C 0.098 3.902 17 H 0.053 0.947 18 C -0.120 4.120 19 C -0.124 4.124 20 C 0.043 3.957 21 N -0.666 5.666 22 H 0.251 0.749 23 H -0.057 1.057 24 H 0.016 0.984 25 H 0.069 0.931 26 H 0.027 0.973 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.037 0.963 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.558 -14.210 -3.029 15.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.236 4.236 3 Si 0.941 3.059 4 H -0.208 1.208 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.636 4.636 8 H 0.069 0.931 9 C 0.064 3.936 10 N -0.251 5.251 11 C -0.078 4.078 12 C -0.173 4.173 13 C -0.144 4.144 14 C -0.029 4.029 15 H 0.040 0.960 16 C -0.012 4.012 17 H 0.071 0.929 18 C -0.158 4.158 19 C -0.162 4.162 20 C -0.086 4.086 21 N -0.297 5.297 22 H 0.060 0.940 23 H -0.040 1.040 24 H 0.033 0.967 25 H 0.088 0.912 26 H 0.046 0.954 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.045 -12.336 -3.136 13.356 hybrid contribution 0.001 -1.379 0.318 1.415 sum 4.046 -13.715 -2.819 14.575 Atomic orbital electron populations 1.70927 1.07897 1.29455 1.49182 1.27426 0.96539 1.06699 0.92916 0.82899 0.74058 0.70960 0.77980 1.20788 1.19465 1.19488 1.22298 0.94705 0.92415 1.54196 0.93051 1.19795 0.90900 0.90269 0.92677 1.63303 1.24066 1.01988 1.35763 1.22656 0.98330 0.96922 0.89877 1.22790 1.02451 0.94293 0.97741 1.22647 0.99473 0.96915 0.95398 1.22469 0.95454 0.89631 0.95361 0.95975 1.22087 0.95696 0.89625 0.93840 0.92910 1.22286 0.98245 0.97673 0.97608 1.22345 1.00250 0.94825 0.98753 1.22914 1.00425 0.96743 0.88499 1.63512 1.40234 1.03077 1.22870 0.93980 1.03966 0.96658 0.91246 0.95401 0.88296 0.92410 0.89741 0.89150 0.94430 0.93139 0.91552 0.90239 0.88599 0.92656 0.83633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.70 13.65 21.45 0.29 -59.41 16 2 C -0.04 -2.31 5.46 84.65 0.46 -1.85 16 3 Si 1.12 51.76 29.90 68.60 2.05 53.82 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 7 C -0.60 -35.44 8.43 25.60 0.22 -35.22 16 8 H 0.05 3.02 7.62 -2.91 -0.02 3.00 16 9 C 0.19 10.53 3.45 85.56 0.30 10.82 16 10 N -0.53 -23.76 4.76 -865.16 -4.12 -27.87 16 11 C 0.05 2.03 6.22 86.64 0.54 2.57 16 12 C -0.13 -4.05 6.94 31.77 0.22 -3.83 16 13 C -0.11 -2.99 6.19 31.98 0.20 -2.79 16 14 C 0.08 2.97 2.18 45.39 0.10 3.07 16 15 H 0.02 0.95 7.80 -2.39 -0.02 0.93 16 16 C 0.10 3.21 2.87 45.06 0.13 3.34 16 17 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 18 C -0.12 -4.39 5.34 31.49 0.17 -4.23 16 19 C -0.12 -3.38 7.00 31.49 0.22 -3.16 16 20 C 0.04 0.96 7.47 86.45 0.65 1.60 16 21 N -0.67 -17.23 7.07 -478.94 -3.39 -20.62 16 22 H 0.25 16.35 7.22 -92.71 -0.67 15.68 16 23 H -0.06 -3.47 7.97 -2.39 -0.02 -3.49 16 24 H 0.02 0.90 5.04 -2.39 -0.01 0.89 16 25 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 26 H 0.03 1.28 7.21 -2.39 -0.02 1.27 16 27 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 28 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.08 2.09 8.06 -2.39 -0.02 2.07 16 30 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.04 1.63 6.11 -2.38 -0.01 1.62 16 32 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.08 1.91 8.14 -2.38 -0.02 1.90 16 35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.35 7.14 8.82 -89.70 -0.79 6.35 16 Total: -1.00 -68.73 285.52 -1.63 -70.35 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 0.34 Total: 13.41 kcal Atomic # 6 Polarization: -32.87 SS G_CDS: 3.19 Total: -29.68 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -7.21 Total: -107.90 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 2.05 Total: 53.82 kcal Total: -68.73 -1.63 -70.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051360221.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.185 kcal (2) G-P(sol) polarization free energy of solvation -68.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds