Wall clock time and date at job start Mon Mar 30 2020 02:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47297 * 2 1 4 4 H 1.08999 * 109.46996 * 183.57565 * 3 2 1 5 5 C 1.50700 * 109.47088 * 303.57749 * 3 2 1 6 6 H 1.07999 * 119.99819 * 114.51992 * 5 3 2 7 7 C 1.37876 * 120.00000 * 294.52009 * 5 3 2 8 8 N 1.31512 * 119.99983 * 350.75503 * 7 5 3 9 9 Si 1.86802 * 119.99712 * 170.76067 * 7 5 3 10 10 H 1.48498 * 109.47193 * 59.99973 * 9 7 5 11 11 H 1.48504 * 109.46763 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46907 * 299.99287 * 9 7 5 13 13 C 1.50697 * 109.46772 * 63.57756 * 3 2 1 14 14 O 1.20762 * 119.99882 * 269.99728 * 13 3 2 15 15 C 1.50706 * 120.00087 * 90.00075 * 13 3 2 16 16 C 1.53000 * 109.46830 * 274.99948 * 15 13 3 17 17 C 1.53005 * 109.46933 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47023 * 60.00048 * 17 16 15 19 19 C 1.53008 * 109.47119 * 299.99989 * 18 17 16 20 20 C 1.52997 * 109.46963 * 60.00088 * 19 18 17 21 21 H 1.09000 * 109.47200 * 295.22891 * 1 2 3 22 22 H 1.08994 * 109.47246 * 175.23031 * 1 2 3 23 23 H 1.09007 * 109.47048 * 55.22995 * 1 2 3 24 24 H 1.08995 * 109.47556 * 120.00572 * 2 1 3 25 25 H 1.09008 * 109.46621 * 240.00383 * 2 1 3 26 26 H 0.97002 * 119.99629 * 180.02562 * 8 7 5 27 27 H 1.08993 * 109.46953 * 34.99999 * 15 13 3 28 28 H 1.09003 * 109.47380 * 299.99707 * 16 15 13 29 29 H 1.08999 * 109.47130 * 60.00018 * 16 15 13 30 30 H 1.08993 * 109.46961 * 300.00118 * 17 16 15 31 31 H 1.08996 * 109.46668 * 179.97438 * 17 16 15 32 32 H 1.08996 * 109.47082 * 179.97438 * 18 17 16 33 33 H 1.09003 * 109.47248 * 59.99681 * 18 17 16 34 34 H 1.08994 * 109.46823 * 299.99887 * 19 18 17 35 35 H 1.08999 * 109.47022 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.46978 * 179.97438 * 20 19 18 37 37 H 1.09003 * 109.47462 * 60.00273 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1281 1.4431 -0.0641 5 6 1.4666 2.1781 -1.1837 6 1 0.7822 2.9991 -1.0294 7 6 1.8158 1.8028 -2.4637 8 7 2.7814 0.9303 -2.6528 9 14 0.9172 2.5339 -3.9292 10 1 1.0876 4.0091 -3.9287 11 1 1.4778 1.9717 -5.1842 12 1 -0.5275 2.2023 -3.8396 13 6 1.6114 2.1268 1.2724 14 8 0.5566 2.7132 1.3168 15 6 2.4990 2.0793 2.4894 16 6 2.2308 0.7887 3.2662 17 6 3.1324 0.7402 4.5014 18 6 2.8362 1.9452 5.3965 19 6 3.1044 3.2358 4.6197 20 6 2.2028 3.2843 3.3846 21 1 -0.3633 0.4380 0.9296 22 1 -0.3633 -1.0240 -0.0854 23 1 -0.3633 0.5861 -0.8442 24 1 1.8934 -0.5139 0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 3.0273 0.6666 -3.5533 27 1 3.5433 2.1060 2.1786 28 1 1.1863 0.7621 3.5770 29 1 2.4422 -0.0697 2.6285 30 1 4.1766 0.7667 4.1902 31 1 2.9409 -0.1790 5.0550 32 1 3.4782 1.9104 6.2767 33 1 1.7919 1.9187 5.7077 34 1 4.1487 3.2622 4.3086 35 1 2.8938 4.0942 5.2576 36 1 2.3936 4.2039 2.8314 37 1 1.1585 3.2578 3.6957 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051690010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:58 Heat of formation + Delta-G solvation = -81.172171 kcal Electronic energy + Delta-G solvation = -16231.850953 eV Core-core repulsion = 13779.499246 eV Total energy + Delta-G solvation = -2452.351707 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.39468 -37.04025 -34.30010 -31.53948 -30.70553 -30.48721 -27.40041 -24.47672 -22.94115 -22.28741 -20.87300 -19.42570 -18.20684 -16.06309 -15.47844 -15.08942 -14.30633 -14.21321 -14.00371 -13.70454 -13.46949 -12.62079 -12.47019 -12.41301 -11.98757 -11.95635 -11.46990 -11.08718 -10.92954 -10.87354 -10.82932 -10.64700 -10.38630 -10.22560 -10.04394 -9.93614 -9.79877 -9.74266 -8.95508 -8.35394 -8.02236 -6.04871 -4.03659 3.13037 3.34246 3.37906 3.43478 4.43628 4.81365 4.92157 4.96744 5.28329 5.30054 5.46512 5.50146 5.69561 5.70262 5.74760 5.82516 6.01755 6.13716 6.22114 6.27046 6.32175 6.34031 6.37025 6.45986 6.54648 6.60024 6.68900 6.80375 6.92771 7.21657 7.41775 7.56866 7.67895 7.95248 8.28775 8.78265 8.99748 9.58129 11.04884 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.042106 B = 0.007521 C = 0.007176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.822257 B = 3722.033670 C = 3900.976526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 C 0.004 3.996 4 H 0.052 0.948 5 C -0.503 4.503 6 H 0.064 0.936 7 C 0.065 3.935 8 N -0.891 5.891 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.370 3.630 14 O -0.467 6.467 15 C -0.142 4.142 16 C -0.106 4.106 17 C -0.117 4.117 18 C -0.119 4.119 19 C -0.118 4.118 20 C -0.106 4.106 21 H 0.034 0.966 22 H 0.026 0.974 23 H 0.068 0.932 24 H 0.025 0.975 25 H 0.079 0.921 26 H 0.261 0.739 27 H 0.089 0.911 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.756 -0.752 12.005 12.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.137 4.137 3 C -0.015 4.015 4 H 0.070 0.930 5 C -0.541 4.541 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.717 3.283 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.201 1.201 13 C 0.246 3.754 14 O -0.340 6.340 15 C -0.161 4.161 16 C -0.143 4.143 17 C -0.154 4.154 18 C -0.157 4.157 19 C -0.155 4.155 20 C -0.144 4.144 21 H 0.053 0.947 22 H 0.045 0.955 23 H 0.087 0.913 24 H 0.044 0.956 25 H 0.098 0.902 26 H 0.071 0.929 27 H 0.107 0.893 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.292 -0.531 11.879 11.961 hybrid contribution -0.281 0.307 -0.914 1.004 sum 1.010 -0.224 10.965 11.014 Atomic orbital electron populations 1.21697 0.97310 0.98668 1.01813 1.21337 0.94914 0.97288 1.00136 1.19259 0.98517 0.93107 0.90662 0.92961 1.20942 1.27024 1.16601 0.89526 0.91763 1.24900 0.94689 0.95317 0.98769 1.69937 1.27709 1.33411 1.21836 0.86687 0.80417 0.79441 0.81729 1.20267 1.21338 1.20115 1.25143 0.84690 0.75492 0.90064 1.90205 1.23689 1.34987 1.85168 1.21871 1.01852 0.96222 0.96133 1.21442 0.99860 0.96817 0.96186 1.21529 0.99980 0.97685 0.96226 1.21544 1.01307 0.95053 0.97768 1.21538 0.99956 0.97206 0.96847 1.21403 1.00077 0.97472 0.95423 0.94685 0.95532 0.91311 0.95615 0.90197 0.92906 0.89291 0.92017 0.90875 0.91855 0.92153 0.92480 0.92187 0.92082 0.92356 0.92057 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.31 37.16 0.35 -2.68 16 2 C -0.10 -2.24 5.50 -26.73 -0.15 -2.39 16 3 C 0.00 0.09 2.23 -92.92 -0.21 -0.12 16 4 H 0.05 1.34 8.03 -51.93 -0.42 0.92 16 5 C -0.50 -13.89 6.76 -34.44 -0.23 -14.12 16 6 H 0.06 1.86 7.10 -52.49 -0.37 1.49 16 7 C 0.06 1.78 5.23 -17.82 -0.09 1.69 16 8 N -0.89 -25.02 12.17 55.43 0.67 -24.34 16 9 Si 0.89 21.59 29.55 -169.99 -5.02 16.57 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.37 8.10 4.61 -29.03 -0.13 7.97 16 14 O -0.47 -11.36 14.86 6.00 0.09 -11.27 16 15 C -0.14 -2.43 2.45 -91.77 -0.22 -2.65 16 16 C -0.11 -1.57 5.16 -26.73 -0.14 -1.71 16 17 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 18 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 19 C -0.12 -1.45 5.92 -26.73 -0.16 -1.61 16 20 C -0.11 -1.66 4.74 -26.73 -0.13 -1.78 16 21 H 0.03 0.75 7.02 -51.93 -0.36 0.38 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 1.67 6.94 -51.92 -0.36 1.31 16 24 H 0.03 0.51 6.15 -51.93 -0.32 0.19 16 25 H 0.08 1.99 6.98 -51.92 -0.36 1.63 16 26 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 27 H 0.09 1.48 8.10 -51.93 -0.42 1.06 16 28 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.11 6.19 -51.93 -0.32 0.79 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.07 1.11 7.87 -51.93 -0.41 0.70 16 LS Contribution 287.61 15.07 4.33 4.33 Total: -1.00 -28.77 287.61 -7.64 -36.42 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -6.29 Total: -1.22 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: -1.43 Total: -20.48 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.67 Total: -24.34 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.77 -7.64 -36.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051690010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.757 kcal (2) G-P(sol) polarization free energy of solvation -28.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds