Wall clock time and date at job start Mon Mar 30 2020 02:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47297 * 2 1 4 4 H 1.08999 * 109.46996 * 183.57565 * 3 2 1 5 5 C 1.50700 * 109.47088 * 303.57749 * 3 2 1 6 6 H 1.07999 * 119.99819 * 114.51992 * 5 3 2 7 7 C 1.37876 * 120.00000 * 294.52009 * 5 3 2 8 8 N 1.31512 * 119.99983 * 350.75503 * 7 5 3 9 9 Si 1.86802 * 119.99712 * 170.76067 * 7 5 3 10 10 H 1.48498 * 109.47193 * 59.99973 * 9 7 5 11 11 H 1.48504 * 109.46763 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46907 * 299.99287 * 9 7 5 13 13 C 1.50697 * 109.46772 * 63.57756 * 3 2 1 14 14 O 1.20762 * 119.99882 * 269.99728 * 13 3 2 15 15 C 1.50706 * 120.00087 * 90.00075 * 13 3 2 16 16 C 1.53000 * 109.46830 * 274.99948 * 15 13 3 17 17 C 1.53005 * 109.46933 * 179.97438 * 16 15 13 18 18 C 1.52998 * 109.47023 * 60.00048 * 17 16 15 19 19 C 1.53008 * 109.47119 * 299.99989 * 18 17 16 20 20 C 1.52997 * 109.46963 * 60.00088 * 19 18 17 21 21 H 1.09000 * 109.47200 * 295.22891 * 1 2 3 22 22 H 1.08994 * 109.47246 * 175.23031 * 1 2 3 23 23 H 1.09007 * 109.47048 * 55.22995 * 1 2 3 24 24 H 1.08995 * 109.47556 * 120.00572 * 2 1 3 25 25 H 1.09008 * 109.46621 * 240.00383 * 2 1 3 26 26 H 0.97002 * 119.99629 * 180.02562 * 8 7 5 27 27 H 1.08993 * 109.46953 * 34.99999 * 15 13 3 28 28 H 1.09003 * 109.47380 * 299.99707 * 16 15 13 29 29 H 1.08999 * 109.47130 * 60.00018 * 16 15 13 30 30 H 1.08993 * 109.46961 * 300.00118 * 17 16 15 31 31 H 1.08996 * 109.46668 * 179.97438 * 17 16 15 32 32 H 1.08996 * 109.47082 * 179.97438 * 18 17 16 33 33 H 1.09003 * 109.47248 * 59.99681 * 18 17 16 34 34 H 1.08994 * 109.46823 * 299.99887 * 19 18 17 35 35 H 1.08999 * 109.47022 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.46978 * 179.97438 * 20 19 18 37 37 H 1.09003 * 109.47462 * 60.00273 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1281 1.4431 -0.0641 5 6 1.4666 2.1781 -1.1837 6 1 0.7822 2.9991 -1.0294 7 6 1.8158 1.8028 -2.4637 8 7 2.7814 0.9303 -2.6528 9 14 0.9172 2.5339 -3.9292 10 1 1.0876 4.0091 -3.9287 11 1 1.4778 1.9717 -5.1842 12 1 -0.5275 2.2023 -3.8396 13 6 1.6114 2.1268 1.2724 14 8 0.5566 2.7132 1.3168 15 6 2.4990 2.0793 2.4894 16 6 2.2308 0.7887 3.2662 17 6 3.1324 0.7402 4.5014 18 6 2.8362 1.9452 5.3965 19 6 3.1044 3.2358 4.6197 20 6 2.2028 3.2843 3.3846 21 1 -0.3633 0.4380 0.9296 22 1 -0.3633 -1.0240 -0.0854 23 1 -0.3633 0.5861 -0.8442 24 1 1.8934 -0.5139 0.8899 25 1 1.8932 -0.5138 -0.8901 26 1 3.0273 0.6666 -3.5533 27 1 3.5433 2.1060 2.1786 28 1 1.1863 0.7621 3.5770 29 1 2.4422 -0.0697 2.6285 30 1 4.1766 0.7667 4.1902 31 1 2.9409 -0.1790 5.0550 32 1 3.4782 1.9104 6.2767 33 1 1.7919 1.9187 5.7077 34 1 4.1487 3.2622 4.3086 35 1 2.8938 4.0942 5.2576 36 1 2.3936 4.2039 2.8314 37 1 1.1585 3.2578 3.6957 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051690010.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:58 Heat of formation + Delta-G solvation = -95.847341 kcal Electronic energy + Delta-G solvation = -16232.487316 eV Core-core repulsion = 13779.499246 eV Total energy + Delta-G solvation = -2452.988070 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.97792 -38.38796 -36.25955 -33.52145 -31.99852 -31.59600 -29.30141 -26.37893 -24.44869 -23.40447 -22.47649 -20.61891 -19.92196 -18.12100 -17.08714 -16.77433 -15.98201 -15.77705 -15.30244 -14.95827 -14.93994 -14.31703 -14.13246 -13.97217 -13.62864 -13.09584 -12.92783 -12.88422 -12.81565 -12.54485 -12.24625 -12.00875 -11.96245 -11.76447 -11.69913 -11.45850 -11.30403 -11.05010 -10.84782 -10.47739 -9.77098 -8.17414 -6.22129 1.36147 1.37657 1.40427 1.48302 2.40843 3.14282 3.39754 3.80868 3.87483 4.12119 4.34109 4.37042 4.49801 4.51807 4.55798 4.60341 4.64292 4.73098 4.73802 4.91367 5.00264 5.08259 5.19994 5.21170 5.28504 5.30717 5.34427 5.38455 5.43765 5.47902 5.59483 5.66664 5.69004 5.88368 6.24819 6.81441 7.01433 7.42086 8.91061 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.042106 B = 0.007521 C = 0.007176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.822257 B = 3722.033670 C = 3900.976526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.093 4.093 3 C -0.004 4.004 4 H 0.036 0.964 5 C -0.521 4.521 6 H 0.041 0.959 7 C 0.027 3.973 8 N -0.910 5.910 9 Si 0.941 3.059 10 H -0.276 1.276 11 H -0.277 1.277 12 H -0.276 1.276 13 C 0.371 3.629 14 O -0.497 6.497 15 C -0.135 4.135 16 C -0.103 4.103 17 C -0.112 4.112 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.104 4.104 21 H 0.035 0.965 22 H 0.054 0.946 23 H 0.037 0.963 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.264 0.736 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 -1.297 13.579 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.131 4.131 3 C -0.023 4.023 4 H 0.054 0.946 5 C -0.559 4.559 6 H 0.059 0.941 7 C -0.173 4.173 8 N -0.548 5.548 9 Si 0.766 3.234 10 H -0.201 1.201 11 H -0.202 1.202 12 H -0.201 1.201 13 C 0.249 3.751 14 O -0.373 6.373 15 C -0.154 4.154 16 C -0.141 4.141 17 C -0.149 4.149 18 C -0.155 4.155 19 C -0.150 4.150 20 C -0.142 4.142 21 H 0.055 0.945 22 H 0.073 0.927 23 H 0.057 0.943 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.852 -1.081 13.458 13.628 hybrid contribution -0.453 0.488 -1.423 1.571 sum 1.399 -0.593 12.035 12.130 Atomic orbital electron populations 1.21585 0.96735 0.99839 1.00483 1.21232 0.95333 0.96118 1.00404 1.19274 0.97273 0.94336 0.91425 0.94606 1.21075 1.26943 1.16569 0.91291 0.94065 1.25490 0.95226 0.95778 1.00818 1.70008 1.28332 1.34094 1.22405 0.85881 0.79328 0.78786 0.79359 1.20146 1.20152 1.20105 1.25336 0.84762 0.74112 0.90872 1.90189 1.25238 1.36175 1.85736 1.21817 1.00632 0.98541 0.94402 1.21458 1.00414 0.94926 0.97268 1.21528 0.99480 0.99059 0.94881 1.21559 1.01875 0.93826 0.98246 1.21524 0.99378 0.98715 0.95395 1.21393 1.00310 0.95917 0.96580 0.94546 0.92712 0.94345 0.92525 0.92603 0.92695 0.88685 0.92641 0.91305 0.91115 0.90182 0.89945 0.92335 0.91287 0.90818 0.93515 0.92709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 9.31 71.98 0.67 -4.98 16 2 C -0.09 -4.22 5.50 30.59 0.17 -4.05 16 3 C 0.00 -0.20 2.23 -12.29 -0.03 -0.23 16 4 H 0.04 1.88 8.03 -2.39 -0.02 1.86 16 5 C -0.52 -29.56 6.76 25.60 0.17 -29.39 16 6 H 0.04 2.48 7.10 -2.91 -0.02 2.46 16 7 C 0.03 1.49 5.23 84.65 0.44 1.93 16 8 N -0.91 -51.62 12.17 21.45 0.26 -51.36 16 9 Si 0.94 44.73 29.55 68.60 2.03 46.75 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.37 16.44 4.61 29.10 0.13 16.58 16 14 O -0.50 -24.79 14.86 -1.46 -0.02 -24.81 16 15 C -0.13 -4.52 2.45 -11.54 -0.03 -4.55 16 16 C -0.10 -2.88 5.16 30.60 0.16 -2.72 16 17 C -0.11 -2.31 5.92 30.60 0.18 -2.12 16 18 C -0.12 -2.24 5.92 30.60 0.18 -2.06 16 19 C -0.11 -2.46 5.92 30.60 0.18 -2.28 16 20 C -0.10 -3.16 4.74 30.59 0.14 -3.02 16 21 H 0.04 1.55 7.02 -2.39 -0.02 1.53 16 22 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 23 H 0.04 1.89 6.94 -2.38 -0.02 1.87 16 24 H 0.06 2.18 6.15 -2.39 -0.01 2.17 16 25 H 0.06 2.80 6.98 -2.38 -0.02 2.78 16 26 H 0.26 14.27 8.31 -92.71 -0.77 13.49 16 27 H 0.09 3.07 8.10 -2.39 -0.02 3.05 16 28 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.07 1.96 6.19 -2.39 -0.01 1.94 16 30 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.05 1.78 7.87 -2.39 -0.02 1.76 16 Total: -1.00 -62.56 287.61 5.66 -56.89 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 1.02 Total: 9.42 kcal Atomic # 6 Polarization: -39.27 SS G_CDS: 2.38 Total: -36.89 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 0.26 Total: -51.36 kcal Atomic # 8 Polarization: -24.79 SS G_CDS: -0.02 Total: -24.81 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -62.56 5.66 -56.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051690010.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.952 kcal (2) G-P(sol) polarization free energy of solvation -62.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds