Wall clock time and date at job start Mon Mar 30 2020 02:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47415 * 2 1 4 4 H 1.09008 * 109.46674 * 305.53182 * 3 2 1 5 5 C 1.50693 * 109.46927 * 185.53488 * 3 2 1 6 6 H 1.07997 * 120.00111 * 239.99450 * 5 3 2 7 7 C 1.37885 * 120.00140 * 59.99942 * 5 3 2 8 8 N 1.31513 * 120.00063 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 119.99929 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47125 * 59.99814 * 9 7 5 11 11 H 1.48498 * 109.47173 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47226 * 299.99996 * 9 7 5 13 13 C 1.50693 * 109.47030 * 65.53225 * 3 2 1 14 14 O 1.20757 * 120.00191 * 28.82114 * 13 3 2 15 15 C 1.50701 * 119.99996 * 208.81405 * 13 3 2 16 16 C 1.53003 * 109.47297 * 272.31264 * 15 13 3 17 17 C 1.53005 * 109.46781 * 179.97438 * 16 15 13 18 18 C 1.52992 * 109.47359 * 60.00144 * 17 16 15 19 19 C 1.53003 * 109.47056 * 299.99687 * 18 17 16 20 20 C 1.52996 * 109.47185 * 152.30807 * 15 13 3 21 21 H 1.09002 * 109.47134 * 54.57489 * 1 2 3 22 22 H 1.09002 * 109.47573 * 174.57730 * 1 2 3 23 23 H 1.09008 * 109.47314 * 294.58046 * 1 2 3 24 24 H 1.08996 * 109.46725 * 239.99178 * 2 1 3 25 25 H 1.09000 * 109.46669 * 120.00300 * 2 1 3 26 26 H 0.96999 * 119.99932 * 180.02562 * 8 7 5 27 27 H 1.09000 * 109.47051 * 32.31270 * 15 13 3 28 28 H 1.08995 * 109.46653 * 299.99853 * 16 15 13 29 29 H 1.09000 * 109.47154 * 60.00176 * 16 15 13 30 30 H 1.09000 * 109.47187 * 299.99191 * 17 16 15 31 31 H 1.09001 * 109.46381 * 179.97438 * 17 16 15 32 32 H 1.09000 * 109.47277 * 179.97438 * 18 17 16 33 33 H 1.09005 * 109.47425 * 59.99708 * 18 17 16 34 34 H 1.09000 * 109.47075 * 299.99802 * 19 18 17 35 35 H 1.08999 * 109.46982 * 180.02562 * 19 18 17 36 36 H 1.08992 * 109.47466 * 300.00192 * 20 15 13 37 37 H 1.09005 * 109.47157 * 60.00461 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5980 1.9841 -0.8364 5 6 3.5407 1.4445 -0.1370 6 1 4.1529 1.8867 0.6350 7 6 4.1324 0.8820 -1.2482 8 7 3.3870 0.3432 -2.1883 9 14 5.9925 0.8852 -1.4184 10 1 6.5951 0.1478 -0.2790 11 1 6.3742 0.2257 -2.6929 12 1 6.4872 2.2854 -1.4187 13 6 1.6527 2.1122 1.2932 14 8 1.5229 1.4553 2.2981 15 6 1.4275 3.6018 1.3323 16 6 2.7560 4.3116 1.6011 17 6 2.5274 5.8239 1.6402 18 6 1.5346 6.1610 2.7543 19 6 0.2061 5.4512 2.4856 20 6 0.4348 3.9384 2.4468 21 1 -0.3633 0.5957 -0.8374 22 1 -0.3634 -1.0231 -0.0971 23 1 -0.3634 0.4275 0.9346 24 1 1.8932 -0.5140 -0.8899 25 1 1.8932 -0.5139 0.8900 26 1 3.8032 -0.0529 -2.9698 27 1 1.0254 3.9337 0.3751 28 1 3.1581 3.9796 2.5582 29 1 3.4632 4.0718 0.8070 30 1 2.1256 6.1555 0.6827 31 1 3.4738 6.3295 1.8321 32 1 1.3720 7.2385 2.7825 33 1 1.9365 5.8294 3.7118 34 1 -0.1959 5.7828 1.5282 35 1 -0.5014 5.6917 3.2791 36 1 -0.5116 3.4328 2.2553 37 1 0.8369 3.6065 3.4040 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051690011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:00 Heat of formation + Delta-G solvation = -97.144059 kcal Electronic energy + Delta-G solvation = -16211.084271 eV Core-core repulsion = 13758.039972 eV Total energy + Delta-G solvation = -2453.044300 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.97664 -38.42498 -36.15773 -33.48389 -32.17281 -31.61989 -29.59629 -26.05794 -24.43785 -23.43883 -22.30587 -20.59773 -19.93264 -18.49473 -17.30009 -16.71963 -16.05448 -15.60335 -15.19893 -14.94130 -14.85877 -14.50211 -14.22270 -13.56759 -13.44623 -13.25283 -13.15311 -12.93430 -12.77039 -12.63905 -12.22833 -12.02492 -12.00360 -11.83353 -11.60403 -11.47109 -11.30865 -11.04153 -10.90661 -10.48066 -9.83156 -8.14591 -6.29900 1.31182 1.42547 1.44705 1.52191 2.42021 3.11957 3.40876 3.82858 3.89534 4.13648 4.34185 4.38963 4.46076 4.51407 4.55911 4.61974 4.64586 4.70713 4.77809 4.89245 5.02040 5.08423 5.17839 5.19968 5.23052 5.28258 5.30916 5.35852 5.43249 5.46390 5.57723 5.60321 5.72928 5.92221 6.22445 6.74430 6.94096 7.36991 8.89676 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.025689 B = 0.009540 C = 0.007523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.718370 B = 2934.190574 C = 3720.930642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.110 4.110 3 C 0.002 3.998 4 H 0.035 0.965 5 C -0.525 4.525 6 H 0.051 0.949 7 C 0.023 3.977 8 N -0.907 5.907 9 Si 0.954 3.046 10 H -0.278 1.278 11 H -0.280 1.280 12 H -0.264 1.264 13 C 0.377 3.623 14 O -0.508 6.508 15 C -0.130 4.130 16 C -0.103 4.103 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.103 4.103 21 H 0.051 0.949 22 H 0.055 0.945 23 H 0.038 0.962 24 H 0.074 0.926 25 H 0.021 0.979 26 H 0.265 0.735 27 H 0.095 0.905 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.155 10.536 5.033 12.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C -0.017 4.017 4 H 0.053 0.947 5 C -0.563 4.563 6 H 0.069 0.931 7 C -0.177 4.177 8 N -0.545 5.545 9 Si 0.779 3.221 10 H -0.204 1.204 11 H -0.205 1.205 12 H -0.189 1.189 13 C 0.256 3.744 14 O -0.385 6.385 15 C -0.149 4.149 16 C -0.140 4.140 17 C -0.149 4.149 18 C -0.155 4.155 19 C -0.149 4.149 20 C -0.141 4.141 21 H 0.070 0.930 22 H 0.074 0.926 23 H 0.057 0.943 24 H 0.092 0.908 25 H 0.040 0.960 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.218 10.108 5.376 12.201 hybrid contribution 1.044 -0.610 -0.383 1.268 sum -3.174 9.498 4.993 11.190 Atomic orbital electron populations 1.21741 0.96472 1.01162 1.00197 1.21357 0.94207 0.98622 1.00633 1.19279 0.96601 0.93794 0.92009 0.94702 1.20920 0.90560 1.39267 1.05510 0.93091 1.25634 1.02450 0.94442 0.95191 1.69971 1.36613 1.38303 1.09643 0.85664 0.80213 0.78851 0.77322 1.20365 1.20494 1.18921 1.25331 0.67763 0.91535 0.89727 1.90188 1.41486 1.68772 1.38057 1.21721 0.98662 0.92958 1.01536 1.21377 0.94910 0.96615 1.01137 1.21523 1.00171 0.93257 0.99947 1.21558 0.94905 1.00826 0.98169 1.21530 0.97910 0.92775 1.02703 1.21426 0.97516 0.97843 0.97324 0.92978 0.92590 0.94267 0.90803 0.96010 0.92562 0.88695 0.93378 0.92156 0.91130 0.90787 0.89833 0.92487 0.91089 0.90426 0.92593 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.76 9.63 71.98 0.69 -5.07 16 2 C -0.11 -5.55 4.96 30.59 0.15 -5.40 16 3 C 0.00 0.11 2.04 -12.29 -0.03 0.09 16 4 H 0.04 1.82 8.07 -2.38 -0.02 1.80 16 5 C -0.52 -28.54 8.14 25.60 0.21 -28.33 16 6 H 0.05 2.77 7.42 -2.91 -0.02 2.75 16 7 C 0.02 1.24 5.29 84.66 0.45 1.69 16 8 N -0.91 -50.66 11.29 21.45 0.24 -50.41 16 9 Si 0.95 42.73 29.54 68.60 2.03 44.76 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 13 C 0.38 17.00 4.50 29.10 0.13 17.13 16 14 O -0.51 -25.03 15.33 -1.44 -0.02 -25.05 16 15 C -0.13 -4.60 2.46 -11.54 -0.03 -4.63 16 16 C -0.10 -3.41 5.19 30.60 0.16 -3.25 16 17 C -0.11 -2.72 5.92 30.59 0.18 -2.54 16 18 C -0.12 -2.45 5.92 30.59 0.18 -2.27 16 19 C -0.11 -2.48 5.93 30.61 0.18 -2.29 16 20 C -0.10 -3.12 4.77 30.61 0.15 -2.97 16 21 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 22 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 23 H 0.04 1.58 7.20 -2.38 -0.02 1.57 16 24 H 0.07 4.06 5.94 -2.39 -0.01 4.04 16 25 H 0.02 1.14 7.66 -2.39 -0.02 1.12 16 26 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 27 H 0.09 3.21 8.07 -2.39 -0.02 3.19 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 2.26 7.40 -2.39 -0.02 2.24 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.05 1.75 7.86 -2.38 -0.02 1.73 16 Total: -1.00 -60.31 291.56 5.68 -54.63 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 1.01 Total: 13.94 kcal Atomic # 6 Polarization: -40.29 SS G_CDS: 2.43 Total: -37.86 kcal Atomic # 7 Polarization: -50.66 SS G_CDS: 0.24 Total: -50.41 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.02 Total: -25.05 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -60.31 5.68 -54.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051690011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.515 kcal (2) G-P(sol) polarization free energy of solvation -60.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds