Wall clock time and date at job start Mon Mar 30 2020 03:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99784 * 2 1 4 4 H 1.48503 * 109.46845 * 240.00072 * 3 2 1 5 5 H 1.48503 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 120.00168 * 3 2 1 7 7 C 1.37875 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99956 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47470 * 179.97438 * 9 7 2 11 11 C 1.46625 * 110.99590 * 66.04176 * 10 9 7 12 12 C 1.56317 * 103.59906 * 176.45821 * 11 10 9 13 13 C 1.54621 * 106.87657 * 324.08261 * 12 11 10 14 14 N 1.41781 * 109.63850 * 98.02442 * 13 12 11 15 15 C 1.44216 * 125.60654 * 128.36350 * 14 13 12 16 16 C 1.55259 * 105.36245 * 182.64445 * 15 14 13 17 17 C 1.55350 * 104.97336 * 0.28452 * 16 15 14 18 18 C 1.46806 * 121.17661 * 283.73240 * 14 13 12 19 19 H 1.08999 * 111.36643 * 280.82260 * 18 14 13 20 20 C 1.45092 * 110.99911 * 297.88545 * 10 9 7 21 21 H 0.97000 * 119.99806 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46948 * 299.99717 * 9 7 2 23 23 H 1.09004 * 109.47662 * 59.99483 * 9 7 2 24 24 H 1.08997 * 110.62334 * 295.02401 * 11 10 9 25 25 H 1.08999 * 110.61976 * 57.86220 * 11 10 9 26 26 H 1.08997 * 109.97247 * 83.42671 * 12 11 10 27 27 H 1.09002 * 109.97389 * 204.74571 * 12 11 10 28 28 H 1.09005 * 109.44130 * 218.07383 * 13 12 11 29 29 H 1.09001 * 109.43704 * 338.00451 * 13 12 11 30 30 H 1.08999 * 110.26279 * 301.61357 * 15 14 13 31 31 H 1.08994 * 110.26500 * 63.67203 * 15 14 13 32 32 H 1.09006 * 110.33517 * 241.41664 * 16 15 14 33 33 H 1.09001 * 110.42939 * 119.21238 * 16 15 14 34 34 H 1.08998 * 110.75374 * 218.54711 * 17 16 15 35 35 H 1.08993 * 110.90770 * 95.25527 * 17 16 15 36 36 H 1.08997 * 109.56430 * 356.98973 * 20 10 9 37 37 H 1.08998 * 109.56408 * 117.32660 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9696 -3.6538 1.2515 12 6 3.8482 -4.9386 1.1066 13 6 2.9928 -5.9850 0.3557 14 7 3.3348 -5.9813 -1.0202 15 6 3.6896 -7.1412 -1.8003 16 6 4.0376 -6.5967 -3.2121 17 6 3.8441 -5.0588 -3.1080 18 6 2.8665 -4.9175 -1.9169 19 1 1.8316 -5.0792 -2.2184 20 6 3.0251 -3.5992 -1.1967 21 1 -0.4850 -0.8401 0.0004 22 1 0.6242 -2.5567 0.8903 23 1 0.6247 -2.5571 -0.8896 24 1 3.5976 -2.7678 1.3450 25 1 2.3004 -3.7403 2.1075 26 1 4.7473 -4.7121 0.5335 27 1 4.1192 -5.3173 2.0921 28 1 3.1803 -6.9742 0.7736 29 1 1.9370 -5.7381 0.4674 30 1 4.5554 -7.6393 -1.3639 31 1 2.8465 -7.8295 -1.8584 32 1 3.3598 -7.0143 -3.9568 33 1 5.0709 -6.8324 -3.4667 34 1 3.4002 -4.6627 -4.0213 35 1 4.7898 -4.5615 -2.8927 36 1 2.7035 -2.7865 -1.8480 37 1 4.0702 -3.4569 -0.9218 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060079723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:57 Heat of formation + Delta-G solvation = 19.099777 kcal Electronic energy + Delta-G solvation = -16463.091863 eV Core-core repulsion = 14047.381026 eV Total energy + Delta-G solvation = -2415.710838 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.48154 -36.44315 -33.47702 -32.29479 -30.06387 -29.21759 -26.00111 -24.54212 -24.01472 -22.10235 -20.64338 -19.64242 -19.36375 -16.71702 -16.01372 -15.45232 -14.78889 -14.50806 -13.83169 -13.69579 -13.51276 -12.83113 -12.62108 -12.29015 -11.80795 -11.65056 -11.34725 -11.24927 -11.16529 -10.82812 -10.70497 -10.51638 -10.36548 -10.19986 -10.12986 -9.87474 -9.70440 -9.05429 -8.37382 -7.20048 -7.02673 -6.35683 -4.10951 3.41237 3.42202 3.61185 4.20528 4.51592 4.81438 5.03082 5.09927 5.20716 5.36255 5.48217 5.65742 5.73908 5.76873 5.89097 5.93366 5.94254 6.07953 6.12955 6.21032 6.26680 6.38644 6.43134 6.52964 6.59750 6.69632 6.86065 6.88683 7.13287 7.27335 7.85564 7.96554 8.15798 8.32268 8.42705 8.54940 8.81275 9.62578 10.99640 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.038522 B = 0.007693 C = 0.007136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.686928 B = 3638.842342 C = 3922.595549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.021 3.979 3 Si 1.065 2.935 4 H -0.289 1.289 5 H -0.282 1.282 6 H -0.289 1.289 7 C -0.626 4.626 8 H 0.048 0.952 9 C 0.177 3.823 10 N -0.550 5.550 11 C 0.073 3.927 12 C -0.137 4.137 13 C 0.157 3.843 14 N -0.674 5.674 15 C 0.123 3.877 16 C -0.127 4.127 17 C -0.120 4.120 18 C 0.143 3.857 19 H 0.048 0.952 20 C 0.077 3.923 21 H 0.269 0.731 22 H 0.017 0.983 23 H 0.017 0.983 24 H 0.038 0.962 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.022 0.978 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.713 -11.686 -3.069 14.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.184 4.184 3 Si 0.893 3.107 4 H -0.215 1.215 5 H -0.207 1.207 6 H -0.215 1.215 7 C -0.665 4.665 8 H 0.067 0.933 9 C 0.051 3.949 10 N -0.273 5.273 11 C -0.055 4.055 12 C -0.176 4.176 13 C 0.031 3.969 14 N -0.404 5.404 15 C -0.003 4.003 16 C -0.165 4.165 17 C -0.159 4.159 18 C 0.037 3.963 19 H 0.065 0.935 20 C -0.052 4.052 21 H 0.080 0.920 22 H 0.035 0.965 23 H 0.035 0.965 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.040 0.960 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.421 -10.422 -2.964 13.132 hybrid contribution 0.319 -1.023 0.042 1.073 sum 7.740 -11.445 -2.922 14.122 Atomic orbital electron populations 1.70789 1.06867 1.30634 1.46236 1.25760 0.96476 1.02604 0.93590 0.83602 0.74981 0.75640 0.76463 1.21515 1.20714 1.21548 1.22576 0.94447 0.93148 1.56320 0.93343 1.19891 0.91605 0.87220 0.96213 1.60981 1.19478 1.45883 1.00958 1.22558 0.95254 0.95401 0.92337 1.23166 0.98693 0.96860 0.98916 1.20260 0.98994 0.95668 0.81963 1.49771 1.73757 1.13062 1.03836 1.21283 0.97645 0.89738 0.91640 1.22691 1.01087 0.96220 0.96530 1.22574 1.00035 0.95249 0.98081 1.21453 0.95467 0.90026 0.89352 0.93466 1.21254 0.96221 0.95140 0.92624 0.92041 0.96542 0.96491 0.94336 0.91639 0.91951 0.92744 0.94110 0.92061 0.92963 0.96008 0.91876 0.91640 0.91487 0.91217 0.91335 0.93803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.66 13.65 55.43 0.76 -26.90 16 2 C 0.02 0.59 5.46 -17.82 -0.10 0.50 16 3 Si 1.06 25.34 29.90 -169.99 -5.08 20.26 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.63 -17.47 7.49 -34.44 -0.26 -17.73 16 8 H 0.05 1.36 6.83 -52.48 -0.36 1.00 16 9 C 0.18 4.57 4.16 -4.98 -0.02 4.55 16 10 N -0.55 -11.91 2.67 -236.84 -0.63 -12.54 16 11 C 0.07 1.45 5.47 -2.19 -0.01 1.44 16 12 C -0.14 -2.26 5.93 -24.10 -0.14 -2.40 16 13 C 0.16 2.56 5.88 -5.65 -0.03 2.53 16 14 N -0.67 -10.80 3.00 -230.50 -0.69 -11.49 16 15 C 0.12 1.63 7.24 -4.06 -0.03 1.60 16 16 C -0.13 -1.51 7.00 -24.29 -0.17 -1.68 16 17 C -0.12 -1.68 6.59 -24.57 -0.16 -1.84 16 18 C 0.14 2.45 3.54 -67.83 -0.24 2.21 16 19 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 20 C 0.08 1.55 4.00 -5.78 -0.02 1.52 16 21 H 0.27 8.17 7.22 -40.82 -0.29 7.87 16 22 H 0.02 0.45 7.99 -51.93 -0.41 0.04 16 23 H 0.02 0.47 8.01 -51.93 -0.42 0.05 16 24 H 0.04 0.84 7.09 -51.93 -0.37 0.48 16 25 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 26 H 0.06 1.07 7.12 -51.93 -0.37 0.70 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.04 0.59 8.05 -51.93 -0.42 0.17 16 29 H 0.06 1.13 6.81 -51.93 -0.35 0.78 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.98 8.04 -51.93 -0.42 0.57 16 36 H 0.07 1.54 7.02 -51.93 -0.36 1.17 16 37 H 0.04 0.89 6.62 -51.93 -0.34 0.55 16 LS Contribution 279.22 15.07 4.21 4.21 Total: -1.00 -29.42 279.22 -8.93 -38.35 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -6.30 Total: -2.59 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.19 Total: -9.30 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: -0.57 Total: -50.93 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.08 Total: 20.26 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -29.42 -8.93 -38.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060079723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.445 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds