Wall clock time and date at job start Mon Mar 30 2020 03:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99784 * 2 1 4 4 H 1.48503 * 109.46845 * 240.00072 * 3 2 1 5 5 H 1.48503 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47295 * 120.00168 * 3 2 1 7 7 C 1.37875 * 120.00308 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99957 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99956 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47470 * 179.97438 * 9 7 2 11 11 C 1.46625 * 110.99590 * 66.04176 * 10 9 7 12 12 C 1.56317 * 103.59906 * 176.45821 * 11 10 9 13 13 C 1.54621 * 106.87657 * 324.08261 * 12 11 10 14 14 N 1.41781 * 109.63850 * 98.02442 * 13 12 11 15 15 C 1.44216 * 125.60654 * 128.36350 * 14 13 12 16 16 C 1.55259 * 105.36245 * 182.64445 * 15 14 13 17 17 C 1.55350 * 104.97336 * 0.28452 * 16 15 14 18 18 C 1.46806 * 121.17661 * 283.73240 * 14 13 12 19 19 H 1.08999 * 111.36643 * 280.82260 * 18 14 13 20 20 C 1.45092 * 110.99911 * 297.88545 * 10 9 7 21 21 H 0.97000 * 119.99806 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46948 * 299.99717 * 9 7 2 23 23 H 1.09004 * 109.47662 * 59.99483 * 9 7 2 24 24 H 1.08997 * 110.62334 * 295.02401 * 11 10 9 25 25 H 1.08999 * 110.61976 * 57.86220 * 11 10 9 26 26 H 1.08997 * 109.97247 * 83.42671 * 12 11 10 27 27 H 1.09002 * 109.97389 * 204.74571 * 12 11 10 28 28 H 1.09005 * 109.44130 * 218.07383 * 13 12 11 29 29 H 1.09001 * 109.43704 * 338.00451 * 13 12 11 30 30 H 1.08999 * 110.26279 * 301.61357 * 15 14 13 31 31 H 1.08994 * 110.26500 * 63.67203 * 15 14 13 32 32 H 1.09006 * 110.33517 * 241.41664 * 16 15 14 33 33 H 1.09001 * 110.42939 * 119.21238 * 16 15 14 34 34 H 1.08998 * 110.75374 * 218.54711 * 17 16 15 35 35 H 1.08993 * 110.90770 * 95.25527 * 17 16 15 36 36 H 1.08997 * 109.56430 * 356.98973 * 20 10 9 37 37 H 1.08998 * 109.56408 * 117.32660 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 2.9696 -3.6538 1.2515 12 6 3.8482 -4.9386 1.1066 13 6 2.9928 -5.9850 0.3557 14 7 3.3348 -5.9813 -1.0202 15 6 3.6896 -7.1412 -1.8003 16 6 4.0376 -6.5967 -3.2121 17 6 3.8441 -5.0588 -3.1080 18 6 2.8665 -4.9175 -1.9169 19 1 1.8316 -5.0792 -2.2184 20 6 3.0251 -3.5992 -1.1967 21 1 -0.4850 -0.8401 0.0004 22 1 0.6242 -2.5567 0.8903 23 1 0.6247 -2.5571 -0.8896 24 1 3.5976 -2.7678 1.3450 25 1 2.3004 -3.7403 2.1075 26 1 4.7473 -4.7121 0.5335 27 1 4.1192 -5.3173 2.0921 28 1 3.1803 -6.9742 0.7736 29 1 1.9370 -5.7381 0.4674 30 1 4.5554 -7.6393 -1.3639 31 1 2.8465 -7.8295 -1.8584 32 1 3.3598 -7.0143 -3.9568 33 1 5.0709 -6.8324 -3.4667 34 1 3.4002 -4.6627 -4.0213 35 1 4.7898 -4.5615 -2.8927 36 1 2.7035 -2.7865 -1.8480 37 1 4.0702 -3.4569 -0.9218 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060079723.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:56 Heat of formation + Delta-G solvation = 1.450793 kcal Electronic energy + Delta-G solvation = -16463.857181 eV Core-core repulsion = 14047.381026 eV Total energy + Delta-G solvation = -2416.476155 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.89436 -38.02295 -35.29119 -34.01108 -31.40467 -30.71906 -27.84595 -25.99970 -25.78457 -23.89945 -21.74775 -21.05245 -20.98641 -18.83810 -17.45504 -16.74847 -16.32054 -15.98385 -15.67887 -15.42460 -15.02586 -14.38321 -14.16707 -13.85491 -13.32494 -13.17501 -13.01837 -12.74049 -12.61278 -12.44612 -12.16720 -12.05278 -11.98246 -11.79129 -11.42483 -11.37874 -11.24779 -11.16609 -10.60726 -9.00663 -8.60472 -8.44310 -6.44857 1.47411 1.54814 1.74591 2.51250 2.94373 3.10766 3.26494 3.90201 3.92509 4.08693 4.14135 4.24365 4.32696 4.50440 4.57476 4.66445 4.73307 4.77787 4.81747 4.92330 4.95000 4.99224 5.03658 5.06797 5.08066 5.16763 5.21110 5.36618 5.43697 5.51381 5.82050 5.95077 6.43319 6.46973 6.56387 6.60698 7.17111 7.38199 8.66598 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.038522 B = 0.007693 C = 0.007136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.686928 B = 3638.842342 C = 3922.595549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.031 4.031 3 Si 1.113 2.887 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.628 4.628 8 H 0.045 0.955 9 C 0.189 3.811 10 N -0.545 5.545 11 C 0.069 3.931 12 C -0.120 4.120 13 C 0.157 3.843 14 N -0.678 5.678 15 C 0.118 3.882 16 C -0.118 4.118 17 C -0.116 4.116 18 C 0.144 3.856 19 H 0.027 0.973 20 C 0.085 3.915 21 H 0.255 0.745 22 H -0.006 1.006 23 H -0.007 1.007 24 H 0.016 0.984 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.025 0.975 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.038 0.962 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.864 -12.902 -3.470 16.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.230 4.230 3 Si 0.935 3.065 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.667 4.667 8 H 0.063 0.937 9 C 0.062 3.938 10 N -0.268 5.268 11 C -0.059 4.059 12 C -0.159 4.159 13 C 0.031 3.969 14 N -0.408 5.408 15 C -0.007 4.007 16 C -0.156 4.156 17 C -0.155 4.155 18 C 0.037 3.963 19 H 0.045 0.955 20 C -0.044 4.044 21 H 0.065 0.935 22 H 0.013 0.987 23 H 0.011 0.989 24 H 0.035 0.965 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 9.589 -11.685 -3.372 15.487 hybrid contribution -0.374 -0.698 0.187 0.814 sum 9.215 -12.383 -3.186 15.761 Atomic orbital electron populations 1.70919 1.07874 1.29851 1.48324 1.27286 0.96527 1.06572 0.92593 0.82979 0.74208 0.71513 0.77823 1.19605 1.20665 1.19728 1.22797 0.94336 0.94074 1.55509 0.93664 1.19591 0.92013 0.88371 0.93870 1.61087 1.19786 1.43485 1.02450 1.22625 0.95254 0.96724 0.91340 1.23054 0.97503 0.94750 1.00623 1.20204 0.97277 0.96870 0.82555 1.49899 1.73299 1.13874 1.03741 1.21472 0.98364 0.88761 0.92075 1.22682 1.02843 0.93979 0.96053 1.22549 0.98889 0.97345 0.96710 1.21306 0.95536 0.88747 0.90732 0.95527 1.21223 0.95438 0.96266 0.91492 0.93506 0.98744 0.98921 0.96543 0.91970 0.92207 0.89847 0.91302 0.94833 0.91203 0.95682 0.90581 0.89424 0.90687 0.91232 0.94397 0.93838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.26 13.65 21.45 0.29 -57.97 16 2 C -0.03 -1.81 5.46 84.65 0.46 -1.35 16 3 Si 1.11 50.93 29.90 68.60 2.05 52.98 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.63 -36.04 7.49 25.60 0.19 -35.85 16 8 H 0.05 2.58 6.83 -2.91 -0.02 2.56 16 9 C 0.19 10.23 4.16 85.56 0.36 10.58 16 10 N -0.55 -24.32 2.67 -903.22 -2.41 -26.73 16 11 C 0.07 2.77 5.47 87.51 0.48 3.24 16 12 C -0.12 -3.74 5.93 32.30 0.19 -3.55 16 13 C 0.16 4.84 5.88 87.79 0.52 5.36 16 14 N -0.68 -20.39 3.00 -883.17 -2.65 -23.04 16 15 C 0.12 2.75 7.24 87.58 0.63 3.38 16 16 C -0.12 -2.38 7.00 32.18 0.23 -2.15 16 17 C -0.12 -3.01 6.59 32.00 0.21 -2.80 16 18 C 0.14 4.84 3.54 44.89 0.16 5.00 16 19 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 20 C 0.08 3.48 4.00 86.01 0.34 3.82 16 21 H 0.26 16.23 7.22 -92.71 -0.67 15.56 16 22 H -0.01 -0.32 7.99 -2.39 -0.02 -0.34 16 23 H -0.01 -0.42 8.01 -2.39 -0.02 -0.44 16 24 H 0.02 0.73 7.09 -2.39 -0.02 0.71 16 25 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.06 1.92 7.12 -2.39 -0.02 1.91 16 27 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 28 H 0.07 1.76 8.05 -2.38 -0.02 1.74 16 29 H 0.03 1.23 6.81 -2.39 -0.02 1.21 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 1.81 8.04 -2.39 -0.02 1.79 16 36 H 0.04 1.76 7.02 -2.39 -0.02 1.74 16 37 H 0.04 1.76 6.62 -2.39 -0.02 1.75 16 Total: -1.00 -64.78 279.22 2.17 -62.61 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 1.12 Total: 6.45 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: 3.77 Total: -14.31 kcal Atomic # 7 Polarization: -102.97 SS G_CDS: -4.77 Total: -107.74 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 2.05 Total: 52.98 kcal Total: -64.78 2.17 -62.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060079723.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.064 kcal (2) G-P(sol) polarization free energy of solvation -64.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds