Wall clock time and date at job start Mon Mar 30 2020 03:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00077 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00123 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00183 * 3 2 1 6 6 H 1.48498 * 109.46997 * 149.99994 * 3 2 1 7 7 C 1.37875 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99989 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47109 * 180.02562 * 9 7 2 11 11 C 1.47789 * 110.99807 * 66.04353 * 10 9 7 12 12 C 1.54153 * 107.69102 * 66.60006 * 11 10 9 13 13 C 1.53857 * 107.55439 * 106.40497 * 12 11 10 14 14 N 1.47426 * 108.35248 * 285.71689 * 13 12 11 15 15 C 1.47818 * 110.16822 * 173.55995 * 14 13 12 16 16 C 1.54104 * 107.10314 * 216.70478 * 15 14 13 17 17 C 1.54645 * 104.98367 * 359.97438 * 16 15 14 18 18 C 1.48372 * 109.95292 * 57.01238 * 14 13 12 19 19 H 1.08995 * 111.58408 * 37.98474 * 18 14 13 20 20 C 1.47321 * 110.99969 * 188.20175 * 10 9 7 21 21 H 0.96997 * 119.99752 * 359.97438 * 1 2 3 22 22 H 1.08992 * 109.46894 * 60.00097 * 9 7 2 23 23 H 1.09004 * 109.47113 * 300.00248 * 9 7 2 24 24 H 1.08997 * 109.81301 * 186.14824 * 11 10 9 25 25 H 1.08993 * 109.81566 * 307.05410 * 11 10 9 26 26 H 1.08990 * 109.84672 * 225.91772 * 12 11 10 27 27 H 1.08998 * 109.84207 * 346.89628 * 12 11 10 28 28 H 1.09004 * 109.68790 * 45.42762 * 13 12 11 29 29 H 1.08998 * 109.69318 * 165.99793 * 13 12 11 30 30 H 1.08988 * 109.91352 * 336.07464 * 15 14 13 31 31 H 1.08999 * 109.90950 * 97.15471 * 15 14 13 32 32 H 1.08998 * 110.34182 * 118.87226 * 16 15 14 33 33 H 1.09004 * 110.34401 * 241.12584 * 16 15 14 34 34 H 1.09002 * 110.73626 * 141.24666 * 17 16 15 35 35 H 1.08998 * 110.73168 * 264.37421 * 17 16 15 36 36 H 1.08996 * 109.48258 * 327.66672 * 20 10 9 37 37 H 1.09001 * 109.47688 * 87.69389 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2056 -3.6158 -0.0005 11 6 2.9756 -3.6542 1.2604 12 6 1.9941 -3.9978 2.3983 13 6 2.2618 -5.4535 2.8183 14 7 1.7158 -6.3446 1.7784 15 6 2.0857 -7.7471 2.0635 16 6 2.3616 -8.4273 0.7085 17 6 2.1237 -7.3240 -0.3486 18 6 2.3217 -6.0193 0.4637 19 1 3.3766 -5.7630 0.5608 20 6 1.5140 -4.9016 -0.1967 21 1 -0.4849 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8902 23 1 0.6246 -2.5571 0.8897 24 1 3.7501 -4.4185 1.1971 25 1 3.4300 -2.6810 1.4456 26 1 2.1612 -3.3319 3.2448 27 1 0.9680 -3.8976 2.0447 28 1 3.3353 -5.6164 2.9148 29 1 1.7720 -5.6571 3.7705 30 1 2.9821 -7.7760 2.6827 31 1 1.2653 -8.2508 2.5746 32 1 3.3923 -8.7791 0.6640 33 1 1.6706 -9.2559 0.5528 34 1 2.8581 -7.3935 -1.1511 35 1 1.1113 -7.3840 -0.7479 36 1 0.5230 -4.8539 0.2544 37 1 1.4185 -5.1039 -1.2636 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060079726.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:21:59 Heat of formation + Delta-G solvation = 22.022604 kcal Electronic energy + Delta-G solvation = -16354.449856 eV Core-core repulsion = 13938.865761 eV Total energy + Delta-G solvation = -2415.584094 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.91741 -36.34867 -33.19842 -32.46917 -29.85996 -29.11537 -26.64497 -25.01452 -23.52878 -22.08576 -20.85314 -20.11886 -18.74914 -16.35327 -15.82265 -15.55233 -14.88145 -14.58220 -14.43499 -13.77857 -13.17929 -12.88156 -12.58441 -12.36797 -12.02402 -11.67359 -11.44522 -11.17911 -11.08504 -11.02490 -10.63278 -10.59916 -10.55230 -10.38915 -10.27177 -9.87437 -9.66745 -9.06791 -8.39367 -8.25332 -7.09504 -5.98160 -3.98908 3.34462 3.40278 3.43651 4.17130 4.46113 4.70308 4.78764 5.01051 5.10870 5.31132 5.37260 5.41313 5.49125 5.60441 5.63137 5.75400 5.76964 5.88338 5.95161 6.03120 6.08726 6.21963 6.30993 6.32532 6.46182 6.61513 6.68777 6.89187 7.13355 7.23180 7.38347 7.47457 7.85653 8.14590 8.28150 8.61796 9.08781 9.64786 11.12775 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.054322 B = 0.006720 C = 0.006463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.319409 B = 4165.919253 C = 4331.567316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.505 4.505 8 H 0.061 0.939 9 C 0.189 3.811 10 N -0.533 5.533 11 C 0.051 3.949 12 C -0.155 4.155 13 C 0.043 3.957 14 N -0.507 5.507 15 C 0.032 3.968 16 C -0.131 4.131 17 C -0.120 4.120 18 C 0.052 3.948 19 H 0.075 0.925 20 C 0.062 3.938 21 H 0.260 0.740 22 H 0.028 0.972 23 H -0.001 1.001 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.669 -14.058 3.493 15.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.543 4.543 8 H 0.080 0.920 9 C 0.063 3.937 10 N -0.257 5.257 11 C -0.077 4.077 12 C -0.194 4.194 13 C -0.085 4.085 14 N -0.232 5.232 15 C -0.097 4.097 16 C -0.169 4.169 17 C -0.158 4.158 18 C -0.056 4.056 19 H 0.093 0.907 20 C -0.067 4.067 21 H 0.070 0.930 22 H 0.046 0.954 23 H 0.017 0.983 24 H 0.076 0.924 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.065 0.935 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.258 -13.772 3.082 14.741 hybrid contribution 0.640 0.722 0.815 1.263 sum 4.898 -13.050 3.897 14.473 Atomic orbital electron populations 1.69964 1.06021 1.26646 1.51222 1.24981 0.94840 0.99216 0.95597 0.86526 0.79679 0.83270 0.78084 1.20678 1.21383 1.19940 1.21160 0.93397 0.90041 1.49727 0.92039 1.19802 0.90312 0.87364 0.96187 1.63269 1.27341 1.02506 1.32598 1.22772 0.95586 1.01389 0.88002 1.22715 1.02761 0.93713 1.00199 1.22704 0.96741 0.94202 0.94849 1.65615 1.53635 1.01490 1.02445 1.22882 0.99366 0.90445 0.96983 1.22427 1.01206 0.98445 0.94842 1.22599 1.02334 0.93651 0.97259 1.23235 0.97990 0.95301 0.89040 0.90730 1.22273 0.96472 0.88875 0.99054 0.93003 0.95420 0.98348 0.92403 0.90081 0.91722 0.89869 0.94789 0.91418 0.94130 0.90768 0.91856 0.91310 0.91122 0.90709 0.93523 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.50 -14.30 8.42 -34.44 -0.29 -14.59 16 8 H 0.06 1.73 7.17 -52.48 -0.38 1.35 16 9 C 0.19 4.98 4.31 -4.97 -0.02 4.96 16 10 N -0.53 -11.73 5.07 -234.27 -1.19 -12.92 16 11 C 0.05 1.00 5.41 -2.73 -0.01 0.98 16 12 C -0.15 -2.81 5.34 -25.68 -0.14 -2.95 16 13 C 0.04 0.65 5.21 -3.09 -0.02 0.64 16 14 N -0.51 -7.68 5.02 -221.82 -1.11 -8.80 16 15 C 0.03 0.38 6.70 -2.74 -0.02 0.36 16 16 C -0.13 -1.42 6.94 -25.29 -0.18 -1.60 16 17 C -0.12 -1.52 6.23 -24.83 -0.15 -1.67 16 18 C 0.05 0.81 2.34 -65.92 -0.15 0.66 16 19 H 0.08 1.21 5.56 -51.93 -0.29 0.92 16 20 C 0.06 1.17 4.86 -3.65 -0.02 1.15 16 21 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 22 H 0.03 0.79 8.10 -51.93 -0.42 0.37 16 23 H 0.00 -0.03 6.21 -51.93 -0.32 -0.35 16 24 H 0.06 1.02 5.03 -51.93 -0.26 0.76 16 25 H 0.08 1.74 6.75 -51.93 -0.35 1.38 16 26 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.08 1.75 5.12 -51.93 -0.27 1.49 16 28 H 0.03 0.48 7.48 -51.93 -0.39 0.09 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.46 7.56 -51.94 -0.39 0.07 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.96 7.97 -51.93 -0.41 0.55 16 36 H 0.05 0.96 6.90 -51.93 -0.36 0.60 16 37 H 0.07 1.22 7.78 -51.93 -0.40 0.81 16 LS Contribution 274.24 15.07 4.13 4.13 Total: -1.00 -29.64 274.24 -9.46 -39.10 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.91 Total: -1.48 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -1.10 Total: -10.59 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -1.56 Total: -47.99 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.64 -9.46 -39.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060079726.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.127 kcal (2) G-P(sol) polarization free energy of solvation -29.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds