Wall clock time and date at job start Mon Mar 30 2020 03:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86793 * 120.00122 * 2 1 4 4 H 1.48500 * 109.47307 * 270.00379 * 3 2 1 5 5 H 1.48504 * 109.47164 * 30.00229 * 3 2 1 6 6 H 1.48497 * 109.47345 * 150.00245 * 3 2 1 7 7 C 1.38811 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00006 * 194.30420 * 7 2 1 9 9 N 1.36939 * 120.00360 * 14.31382 * 7 2 1 10 10 C 1.46936 * 120.62872 * 30.95421 * 9 7 2 11 11 C 1.53188 * 108.77181 * 126.37346 * 10 9 7 12 12 C 1.53048 * 109.31093 * 54.63678 * 11 10 9 13 13 C 1.53037 * 109.53735 * 298.63185 * 12 11 10 14 14 C 1.46925 * 120.63086 * 210.94207 * 9 7 2 15 15 H 1.08999 * 109.58804 * 113.69929 * 14 9 7 16 16 C 1.52996 * 109.58632 * 353.40992 * 14 9 7 17 17 H 1.09003 * 110.72389 * 296.62707 * 16 14 9 18 18 C 1.54940 * 110.66544 * 173.53531 * 16 14 9 19 19 C 1.54600 * 102.91909 * 204.14955 * 18 16 14 20 20 C 1.53991 * 105.14065 * 21.95657 * 19 18 16 21 21 N 1.47904 * 107.05959 * 1.22582 * 20 19 18 22 22 H 0.97006 * 119.99980 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.58464 * 246.16167 * 10 9 7 24 24 H 1.08995 * 109.58504 * 6.44232 * 10 9 7 25 25 H 1.09002 * 109.49877 * 174.58219 * 11 10 9 26 26 H 1.08993 * 109.50122 * 294.65518 * 11 10 9 27 27 H 1.09000 * 109.46141 * 58.65394 * 12 11 10 28 28 H 1.09001 * 109.45942 * 178.61176 * 12 11 10 29 29 H 1.09001 * 109.49832 * 301.41156 * 13 12 11 30 30 H 1.09006 * 109.49580 * 181.32370 * 13 12 11 31 31 H 1.09002 * 110.72441 * 85.79558 * 18 16 14 32 32 H 1.09003 * 110.87752 * 322.57983 * 18 16 14 33 33 H 1.09005 * 110.30871 * 263.04135 * 19 18 16 34 34 H 1.08999 * 110.38820 * 140.91784 * 19 18 16 35 35 H 1.09000 * 109.92144 * 241.87282 * 20 19 18 36 36 H 1.09007 * 109.91752 * 120.57565 * 20 19 18 37 37 H 1.00899 * 111.00360 * 95.17688 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0651 -1.2168 0.2305 9 7 1.3574 -2.3696 -0.2942 10 6 0.2153 -2.3765 -1.2187 11 6 0.4781 -3.4094 -2.3191 12 6 0.7763 -4.7668 -1.6782 13 6 2.0309 -4.6577 -0.8087 14 6 1.7858 -3.6390 0.3088 15 1 1.0076 -4.0070 0.9774 16 6 3.0788 -3.4216 1.0973 17 1 3.8879 -3.1149 0.4344 18 6 3.4664 -4.7037 1.8762 19 6 4.3370 -4.1568 3.0308 20 6 3.9340 -2.6773 3.1724 21 7 2.8742 -2.4188 2.1737 22 1 -0.4850 0.8401 0.0004 23 1 -0.6920 -2.6428 -0.6766 24 1 0.0987 -1.3879 -1.6628 25 1 -0.4020 -3.4936 -2.9566 26 1 1.3323 -3.0938 -2.9179 27 1 -0.0687 -5.0701 -1.0601 28 1 0.9393 -5.5092 -2.4595 29 1 2.8709 -4.3306 -1.4215 30 1 2.2561 -5.6305 -0.3714 31 1 4.0434 -5.3791 1.2446 32 1 2.5800 -5.2047 2.2654 33 1 5.3944 -4.2384 2.7787 34 1 4.1260 -4.6965 3.9540 35 1 4.7942 -2.0375 2.9751 36 1 3.5518 -2.4910 4.1761 37 1 1.9581 -2.5128 2.5860 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063190282.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:24 Heat of formation + Delta-G solvation = 1.174889 kcal Electronic energy + Delta-G solvation = -16730.688482 eV Core-core repulsion = 14314.200363 eV Total energy + Delta-G solvation = -2416.488119 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.27476 -38.08476 -34.79899 -32.79972 -31.67000 -30.54278 -28.55286 -26.82741 -23.79055 -23.66841 -21.65360 -21.13127 -20.68325 -18.40153 -17.14904 -16.37419 -16.07292 -15.62942 -15.26199 -15.03991 -14.56525 -14.42833 -14.17308 -13.98473 -13.67749 -12.85518 -12.76413 -12.45562 -12.32210 -12.30440 -12.16170 -11.90496 -11.85000 -11.67654 -11.49053 -11.35327 -11.01276 -10.80219 -10.34932 -9.11149 -8.37923 -7.64125 -5.07191 1.50229 1.51905 1.60555 2.66385 3.37892 3.54844 3.75063 3.96391 4.01433 4.20763 4.23056 4.30240 4.37375 4.45234 4.61686 4.66510 4.78744 4.82407 4.92110 5.02174 5.05134 5.12294 5.14178 5.21951 5.23488 5.31939 5.39557 5.44667 5.55624 5.69680 5.85901 6.01062 6.25872 6.64651 6.67940 7.39121 8.07039 8.58290 9.43869 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.019575 B = 0.014392 C = 0.008956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.033230 B = 1945.033302 C = 3125.506438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.061 4.061 3 Si 0.950 3.050 4 H -0.296 1.296 5 H -0.306 1.306 6 H -0.274 1.274 7 C -0.185 4.185 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.177 3.823 11 C -0.134 4.134 12 C -0.105 4.105 13 C -0.120 4.120 14 C 0.172 3.828 15 H 0.009 0.991 16 C 0.092 3.908 17 H 0.065 0.935 18 C -0.142 4.142 19 C -0.141 4.141 20 C 0.034 3.966 21 N -0.663 5.663 22 H 0.238 0.762 23 H -0.010 1.010 24 H 0.047 0.953 25 H 0.062 0.938 26 H 0.048 0.952 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.328 0.672 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.395 -11.652 1.914 13.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.253 4.253 3 Si 0.782 3.218 4 H -0.224 1.224 5 H -0.234 1.234 6 H -0.199 1.199 7 C -0.316 4.316 8 H 0.095 0.905 9 N -0.324 5.324 10 C 0.051 3.949 11 C -0.173 4.173 12 C -0.142 4.142 13 C -0.159 4.159 14 C 0.066 3.934 15 H 0.026 0.974 16 C -0.018 4.018 17 H 0.083 0.917 18 C -0.182 4.182 19 C -0.180 4.180 20 C -0.096 4.096 21 N -0.290 5.290 22 H 0.047 0.953 23 H 0.008 0.992 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.646 -10.913 1.612 12.879 hybrid contribution -0.395 0.660 0.505 0.920 sum 6.251 -10.253 2.118 12.193 Atomic orbital electron populations 1.70172 1.06315 1.24381 1.59144 1.25569 0.95667 1.00535 1.03537 0.85484 0.78264 0.81417 0.76647 1.22420 1.23366 1.19871 1.19406 0.92262 0.84077 1.35836 0.90488 1.44382 1.35526 1.03204 1.49258 1.20556 0.87904 0.97022 0.89446 1.22035 1.00474 0.96606 0.98161 1.21372 0.97594 0.96363 0.98911 1.21921 0.97859 0.98738 0.97420 1.20778 0.93007 0.87004 0.92651 0.97382 1.22578 0.96490 0.89495 0.93223 0.91652 1.23121 1.00013 0.97720 0.97370 1.22747 1.00401 0.96075 0.98802 1.22856 0.95718 0.95545 0.95464 1.62864 1.05591 1.50723 1.09822 0.95330 0.99233 0.93414 0.91903 0.93291 0.93062 0.90594 0.92695 0.90181 0.89641 0.91535 0.90666 0.90374 0.92078 0.91626 0.85675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.21 11.24 21.65 0.24 -57.97 16 2 C -0.06 -3.49 4.96 84.86 0.42 -3.07 16 3 Si 0.95 47.82 29.58 68.60 2.03 49.85 16 4 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 5 H -0.31 -15.73 7.11 99.48 0.71 -15.03 16 6 H -0.27 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.18 -10.04 7.60 84.03 0.64 -9.40 16 8 H 0.08 4.21 5.94 -2.91 -0.02 4.19 16 9 N -0.60 -29.62 2.98 -675.23 -2.01 -31.63 16 10 C 0.18 8.69 5.27 86.36 0.46 9.15 16 11 C -0.13 -5.08 6.08 30.67 0.19 -4.90 16 12 C -0.10 -3.32 5.88 30.62 0.18 -3.14 16 13 C -0.12 -3.85 5.14 30.67 0.16 -3.69 16 14 C 0.17 6.78 2.47 44.97 0.11 6.89 16 15 H 0.01 0.36 8.10 -2.39 -0.02 0.34 16 16 C 0.09 3.28 1.93 45.26 0.09 3.37 16 17 H 0.07 2.55 7.65 -2.39 -0.02 2.53 16 18 C -0.14 -3.74 5.80 31.80 0.18 -3.55 16 19 C -0.14 -3.37 6.93 31.47 0.22 -3.15 16 20 C 0.03 1.02 7.51 86.44 0.65 1.67 16 21 N -0.66 -25.79 4.99 -480.34 -2.40 -28.19 16 22 H 0.24 14.41 8.31 -92.70 -0.77 13.64 16 23 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 24 H 0.05 2.69 6.19 -2.39 -0.01 2.68 16 25 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.08 2.08 7.71 -2.38 -0.02 2.06 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 1.71 8.03 -2.39 -0.02 1.69 16 33 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 37 H 0.33 13.58 8.62 -89.69 -0.77 12.80 16 Total: -1.00 -63.45 279.80 1.41 -62.04 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: 0.26 Total: 15.72 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: 3.29 Total: -9.82 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -4.17 Total: -117.79 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Total: -63.45 1.41 -62.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063190282.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.215 kcal (2) G-P(sol) polarization free energy of solvation -63.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds