Wall clock time and date at job start Mon Mar 30 2020 02:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46861 * 2 1 4 4 C 1.50698 * 109.47208 * 240.00189 * 2 1 3 5 5 H 1.08000 * 120.00073 * 239.99829 * 4 2 1 6 6 C 1.37877 * 119.99976 * 60.00142 * 4 2 1 7 7 N 1.31513 * 120.00385 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 120.00119 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47103 * 59.99682 * 8 6 4 10 10 H 1.48503 * 109.47422 * 179.97438 * 8 6 4 11 11 H 1.48506 * 109.46934 * 299.99920 * 8 6 4 12 12 C 1.50694 * 109.47166 * 119.99986 * 2 1 3 13 13 O 1.20762 * 120.00060 * 119.99929 * 12 2 1 14 14 C 1.50703 * 120.00136 * 300.00309 * 12 2 1 15 15 C 1.53000 * 109.46912 * 90.00129 * 14 12 2 16 16 C 1.53001 * 109.46886 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46963 * 299.99499 * 16 15 14 18 18 C 1.52997 * 109.47092 * 60.00194 * 17 16 15 19 19 C 1.53002 * 109.46966 * 210.00042 * 14 12 2 20 20 H 1.08996 * 109.47471 * 299.99431 * 1 2 3 21 21 H 1.09000 * 109.47352 * 60.00064 * 1 2 3 22 22 H 1.09008 * 109.46884 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.46932 * 179.97438 * 3 2 1 24 24 H 1.08993 * 109.47426 * 299.99969 * 3 2 1 25 25 H 1.09000 * 109.47022 * 59.99810 * 3 2 1 26 26 H 0.96998 * 120.00283 * 180.02562 * 7 6 4 27 27 H 1.09002 * 109.47152 * 329.99901 * 14 12 2 28 28 H 1.09001 * 109.47194 * 299.99742 * 15 14 12 29 29 H 1.08992 * 109.47399 * 59.99914 * 15 14 12 30 30 H 1.09000 * 109.47437 * 180.02562 * 16 15 14 31 31 H 1.09002 * 109.47508 * 59.99571 * 16 15 14 32 32 H 1.09002 * 109.47067 * 300.00341 * 17 16 15 33 33 H 1.09000 * 109.47312 * 180.02562 * 17 16 15 34 34 H 1.09001 * 109.47375 * 180.02562 * 18 17 16 35 35 H 1.09002 * 109.47497 * 59.99850 * 18 17 16 36 36 H 1.09002 * 109.47075 * 299.99352 * 19 14 12 37 37 H 1.08996 * 109.47407 * 60.00310 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1193 -4.0080 9 1 1.8281 -2.5197 -4.0083 10 1 1.8270 -0.4197 -5.2205 11 1 3.8076 -1.1187 -4.0077 12 6 2.0323 -0.7104 1.2304 13 8 2.7266 -1.6922 1.1196 14 6 1.6682 -0.1956 2.5992 15 6 0.3672 -0.8543 3.0623 16 6 -0.0027 -0.3311 4.4517 17 6 1.1179 -0.6665 5.4380 18 6 2.4189 -0.0078 4.9748 19 6 2.7890 -0.5313 3.5851 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0278 -0.0005 23 1 3.1299 1.4426 0.0005 24 1 1.6766 1.9564 -0.8899 25 1 1.6765 1.9563 0.8900 26 1 0.7082 1.1610 -3.4844 27 1 1.5332 0.8852 2.5568 28 1 -0.4312 -0.6151 2.3599 29 1 0.5022 -1.9350 3.1047 30 1 -0.9293 -0.8007 4.7819 31 1 -0.1378 0.7496 4.4090 32 1 1.2530 -1.7472 5.4807 33 1 0.8542 -0.2942 6.4279 34 1 3.2174 -0.2471 5.6772 35 1 2.2839 1.0729 4.9320 36 1 2.9239 -1.6121 3.6275 37 1 3.7158 -0.0621 3.2552 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075581466.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:12 Heat of formation + Delta-G solvation = -72.426341 kcal Electronic energy + Delta-G solvation = -16388.725858 eV Core-core repulsion = 13936.753399 eV Total energy + Delta-G solvation = -2451.972459 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.152 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.47545 -37.01227 -34.65955 -31.51284 -30.53570 -30.18073 -25.83217 -25.09099 -23.81559 -22.28663 -21.24108 -19.50627 -17.94720 -15.93719 -15.32382 -15.28097 -14.30467 -14.09505 -14.00890 -13.48770 -13.25929 -12.70836 -12.32034 -12.02343 -12.00234 -11.59651 -11.30691 -10.96444 -10.93458 -10.84403 -10.73979 -10.68586 -10.55927 -10.36421 -10.07932 -9.94835 -9.78435 -9.72901 -8.78490 -8.33725 -8.01328 -5.96223 -4.04818 3.14101 3.35451 3.38275 3.43780 4.43744 4.82760 4.93565 4.98236 5.29313 5.30649 5.48123 5.51899 5.71002 5.72295 5.75948 5.83677 6.01310 6.16339 6.26441 6.29354 6.37075 6.38876 6.52782 6.59046 6.64451 6.70419 6.76998 6.89390 6.95810 7.21038 7.45538 7.77491 7.94102 8.08518 8.35243 8.80016 9.00590 9.60764 11.05300 Molecular weight = 224.15amu Principal moments of inertia in cm(-1) A = 0.048818 B = 0.007567 C = 0.007255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.416104 B = 3699.622099 C = 3858.569055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.024 3.976 3 C -0.127 4.127 4 C -0.501 4.501 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.372 3.628 13 O -0.467 6.467 14 C -0.140 4.140 15 C -0.110 4.110 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.117 4.117 19 C -0.107 4.107 20 H 0.019 0.981 21 H 0.092 0.908 22 H 0.027 0.973 23 H 0.027 0.973 24 H 0.093 0.907 25 H 0.016 0.984 26 H 0.260 0.740 27 H 0.090 0.910 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.656 0.961 12.084 12.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.023 3.977 3 C -0.184 4.184 4 C -0.539 4.539 5 H 0.087 0.913 6 C -0.137 4.137 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.247 3.753 13 O -0.341 6.341 14 C -0.159 4.159 15 C -0.147 4.147 16 C -0.154 4.154 17 C -0.157 4.157 18 C -0.155 4.155 19 C -0.145 4.145 20 H 0.038 0.962 21 H 0.111 0.889 22 H 0.047 0.953 23 H 0.046 0.954 24 H 0.112 0.888 25 H 0.035 0.965 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.361 0.545 11.872 11.963 hybrid contribution 0.299 -0.341 -0.855 0.968 sum -1.062 0.205 11.018 11.071 Atomic orbital electron populations 1.21802 0.96024 0.99442 1.01170 1.18645 0.94070 0.93748 0.91223 1.21766 0.98619 0.96918 1.01132 1.21112 1.31132 1.12324 0.89344 0.91338 1.24887 0.94982 0.94993 0.98852 1.69780 1.37085 1.22976 1.23304 0.86599 0.79277 0.79797 0.81995 1.20309 1.21344 1.20303 1.25189 0.75561 0.82815 0.91687 1.90198 1.30269 1.24183 1.89400 1.21817 0.96390 1.02194 0.95531 1.21523 0.96584 1.00059 0.96539 1.21526 0.97720 1.01101 0.95026 1.21543 0.95349 1.00658 0.98125 1.21539 0.97044 1.00191 0.96699 1.21431 0.97528 1.01747 0.93762 0.96198 0.88940 0.95343 0.95369 0.88833 0.96531 0.92994 0.89187 0.90528 0.92046 0.92165 0.91915 0.92170 0.92489 0.92360 0.92095 0.91426 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 7.20 37.16 0.27 -2.64 16 2 C 0.02 0.59 0.60 -156.82 -0.09 0.49 16 3 C -0.13 -2.94 8.07 37.16 0.30 -2.64 16 4 C -0.50 -14.04 7.83 -34.44 -0.27 -14.31 16 5 H 0.07 2.03 6.76 -52.49 -0.35 1.68 16 6 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -24.31 9.35 55.43 0.52 -23.80 16 8 Si 0.90 21.69 29.54 -169.99 -5.02 16.67 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.37 8.35 5.09 -29.04 -0.15 8.21 16 13 O -0.47 -11.83 15.28 6.00 0.09 -11.73 16 14 C -0.14 -2.45 2.00 -91.77 -0.18 -2.63 16 15 C -0.11 -1.70 5.04 -26.73 -0.13 -1.83 16 16 C -0.12 -1.43 5.92 -26.73 -0.16 -1.59 16 17 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 18 C -0.12 -1.45 5.92 -26.71 -0.16 -1.61 16 19 C -0.11 -1.69 4.80 -26.70 -0.13 -1.81 16 20 H 0.02 0.38 6.32 -51.93 -0.33 0.05 16 21 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 22 H 0.03 0.64 8.14 -51.92 -0.42 0.22 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 25 H 0.02 0.32 6.80 -51.93 -0.35 -0.03 16 26 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.09 1.51 6.64 -51.93 -0.34 1.17 16 28 H 0.08 1.22 5.66 -51.93 -0.29 0.93 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.13 7.86 -51.93 -0.41 0.72 16 37 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 280.93 15.07 4.23 4.23 Total: -1.00 -28.66 280.93 -7.21 -35.87 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -6.08 Total: -1.00 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -0.96 Total: -20.25 kcal Atomic # 7 Polarization: -24.31 SS G_CDS: 0.52 Total: -23.80 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.66 -7.21 -35.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075581466.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.558 kcal (2) G-P(sol) polarization free energy of solvation -28.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds