Wall clock time and date at job start Mon Mar 30 2020 03:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99744 * 2 1 4 4 H 1.48499 * 109.46981 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46979 * 300.00089 * 3 2 1 6 6 H 1.48497 * 109.47160 * 59.99747 * 3 2 1 7 7 C 1.37873 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99848 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00548 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47323 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.46927 * 179.97438 * 10 9 7 12 12 C 1.46597 * 111.00453 * 316.16246 * 11 10 9 13 13 C 1.52457 * 111.09129 * 180.26566 * 12 11 10 14 14 N 1.45478 * 108.24368 * 55.47924 * 13 12 11 15 15 C 1.46165 * 117.91012 * 177.03152 * 14 13 12 16 16 C 1.54887 * 105.83977 * 152.33264 * 15 14 13 17 17 C 1.55408 * 104.96883 * 356.05073 * 16 15 14 18 18 C 1.48793 * 109.30919 * 297.29042 * 14 13 12 19 19 H 1.08999 * 111.10296 * 306.16911 * 18 14 13 20 20 C 1.47560 * 111.00267 * 189.99815 * 11 10 9 21 21 H 0.96999 * 120.00484 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.46855 * 59.99590 * 9 7 2 23 23 H 1.09006 * 109.46657 * 300.00021 * 9 7 2 24 24 H 1.08999 * 109.47298 * 60.00095 * 10 9 7 25 25 H 1.08994 * 109.47268 * 300.00142 * 10 9 7 26 26 H 1.08999 * 109.18082 * 300.35985 * 12 11 10 27 27 H 1.08999 * 109.18330 * 59.64490 * 12 11 10 28 28 H 1.09003 * 109.04411 * 296.01911 * 13 12 11 29 29 H 1.08995 * 109.96300 * 175.47618 * 13 12 11 30 30 H 1.09003 * 110.17509 * 33.24098 * 15 14 13 31 31 H 1.08997 * 110.24217 * 271.45862 * 15 14 13 32 32 H 1.09000 * 110.34498 * 114.93037 * 16 15 14 33 33 H 1.09003 * 110.33828 * 237.17554 * 16 15 14 34 34 H 1.08993 * 110.92427 * 95.89458 * 17 16 15 35 35 H 1.09003 * 110.92420 * 219.54684 * 17 16 15 36 36 H 1.09000 * 109.85820 * 63.45590 * 20 11 10 37 37 H 1.09004 * 109.92210 * 302.46127 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5110 -4.9342 0.0012 12 6 0.3937 -4.8955 0.9494 13 6 -0.3660 -6.2173 0.9564 14 7 0.5806 -7.2851 1.2393 15 6 0.0607 -8.6457 1.3615 16 6 1.2244 -9.5815 0.9502 17 6 2.3671 -8.6281 0.5024 18 6 1.5938 -7.3456 0.1513 19 1 1.1166 -7.4323 -0.8248 20 6 2.4216 -6.0705 0.2403 21 1 -0.4851 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 2.8721 -3.6043 0.8905 25 1 2.8721 -3.6043 -0.8894 26 1 0.7802 -4.7054 1.9507 27 1 -0.2859 -4.0907 0.6694 28 1 -0.8175 -6.3732 -0.0234 29 1 -1.1408 -6.1971 1.7227 30 1 -0.7884 -8.7852 0.6923 31 1 -0.2360 -8.8450 2.3911 32 1 1.5447 -10.1839 1.8002 33 1 0.9203 -10.2232 0.1232 34 1 3.0672 -8.4495 1.3184 35 1 2.8834 -9.0232 -0.3725 36 1 2.8664 -5.9861 1.2319 37 1 3.2054 -6.0841 -0.5170 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000075581491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:07 Heat of formation + Delta-G solvation = 7.257382 kcal Electronic energy + Delta-G solvation = -15831.915373 eV Core-core repulsion = 13415.691011 eV Total energy + Delta-G solvation = -2416.224362 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.81543 -36.48907 -33.19405 -32.46784 -30.73851 -28.60230 -27.83215 -24.74787 -23.02523 -22.44300 -20.91971 -19.88704 -19.27975 -16.45998 -15.78051 -15.63268 -14.87814 -14.59240 -14.28170 -14.14019 -13.76964 -13.27111 -12.50463 -12.48065 -12.19793 -12.17976 -11.44776 -11.14596 -11.08095 -10.94870 -10.92075 -10.72169 -10.61689 -10.43947 -10.28927 -9.90784 -9.28213 -9.05489 -8.33572 -8.20536 -7.58368 -5.99139 -4.01153 3.32209 3.39556 3.43851 4.05215 4.35187 4.50886 4.65680 4.79082 4.92142 5.27731 5.36799 5.39994 5.42465 5.58970 5.60808 5.69052 5.75839 5.82489 5.84066 5.93617 6.01479 6.13101 6.25763 6.32101 6.44553 6.55220 6.56144 6.95855 7.05309 7.35776 7.56530 7.67296 7.83823 7.88042 8.06571 8.44979 9.05707 9.62635 11.12393 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.068186 B = 0.005361 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.541254 B = 5222.093916 C = 5524.703938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.020 3.980 10 C 0.066 3.934 11 N -0.550 5.550 12 C 0.063 3.937 13 C 0.064 3.936 14 N -0.544 5.544 15 C 0.051 3.949 16 C -0.126 4.126 17 C -0.114 4.114 18 C 0.069 3.931 19 H 0.060 0.940 20 C 0.072 3.928 21 H 0.260 0.740 22 H 0.024 0.976 23 H 0.020 0.980 24 H 0.020 0.980 25 H 0.061 0.939 26 H 0.033 0.967 27 H 0.095 0.905 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.039 0.961 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 -16.948 1.647 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.061 4.061 11 N -0.276 5.276 12 C -0.066 4.066 13 C -0.065 4.065 14 N -0.270 5.270 15 C -0.077 4.077 16 C -0.164 4.164 17 C -0.153 4.153 18 C -0.039 4.039 19 H 0.078 0.922 20 C -0.057 4.057 21 H 0.069 0.931 22 H 0.042 0.958 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.080 0.920 26 H 0.051 0.949 27 H 0.113 0.887 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.327 -16.743 1.676 16.879 hybrid contribution 0.272 0.894 0.086 0.939 sum 1.599 -15.849 1.762 16.027 Atomic orbital electron populations 1.69974 1.06033 1.26478 1.50899 1.24990 0.94830 0.99199 0.95298 0.86536 0.80117 0.83787 0.77557 1.19748 1.20996 1.21044 1.21233 0.93066 0.91003 1.50576 0.92689 1.19256 0.94165 0.90602 0.97717 1.22271 0.96937 0.87892 0.98950 1.61729 1.10965 1.03888 1.50973 1.21931 0.94054 0.96140 0.94428 1.21835 0.94182 0.90993 0.99447 1.62713 1.16454 1.04012 1.43799 1.22436 0.96126 0.88265 1.00825 1.22639 0.95355 0.97515 1.00925 1.22320 0.97239 0.94503 1.01212 1.22605 0.93351 0.94597 0.93376 0.92249 1.21955 0.94423 0.89564 0.99729 0.93062 0.95787 0.96157 0.96179 0.92015 0.94876 0.88736 0.94480 0.90709 0.94657 0.90827 0.91187 0.91666 0.90697 0.91132 0.94306 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 8 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.02 0.52 4.12 -27.88 -0.11 0.41 16 10 C 0.07 1.45 5.26 -3.83 -0.02 1.43 16 11 N -0.55 -10.58 4.78 -235.13 -1.12 -11.70 16 12 C 0.06 1.17 4.71 -4.27 -0.02 1.15 16 13 C 0.06 0.99 5.95 -4.87 -0.03 0.96 16 14 N -0.54 -7.84 4.67 -225.95 -1.06 -8.90 16 15 C 0.05 0.59 6.88 -3.23 -0.02 0.57 16 16 C -0.13 -1.23 6.99 -24.46 -0.17 -1.40 16 17 C -0.11 -1.24 6.65 -25.03 -0.17 -1.41 16 18 C 0.07 0.96 2.73 -66.60 -0.18 0.78 16 19 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 20 C 0.07 1.15 5.27 -3.82 -0.02 1.13 16 21 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 22 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.02 0.56 6.34 -51.93 -0.33 0.23 16 24 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 25 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.09 1.94 6.17 -51.93 -0.32 1.62 16 28 H 0.04 0.58 8.08 -51.93 -0.42 0.16 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.04 0.40 8.06 -51.93 -0.42 -0.02 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 287.16 15.07 4.33 4.33 Total: -1.00 -30.13 287.16 -9.81 -39.94 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -6.52 Total: -4.17 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: -1.16 Total: -10.03 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -1.44 Total: -46.86 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -30.13 -9.81 -39.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075581491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.198 kcal (2) G-P(sol) polarization free energy of solvation -30.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds