Wall clock time and date at job start Mon Mar 30 2020 03:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99744 * 2 1 4 4 H 1.48499 * 109.46981 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46979 * 300.00089 * 3 2 1 6 6 H 1.48497 * 109.47160 * 59.99747 * 3 2 1 7 7 C 1.37873 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99848 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00548 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47323 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.46927 * 179.97438 * 10 9 7 12 12 C 1.46597 * 111.00453 * 316.16246 * 11 10 9 13 13 C 1.52457 * 111.09129 * 180.26566 * 12 11 10 14 14 N 1.45478 * 108.24368 * 55.47924 * 13 12 11 15 15 C 1.46165 * 117.91012 * 177.03152 * 14 13 12 16 16 C 1.54887 * 105.83977 * 152.33264 * 15 14 13 17 17 C 1.55408 * 104.96883 * 356.05073 * 16 15 14 18 18 C 1.48793 * 109.30919 * 297.29042 * 14 13 12 19 19 H 1.08999 * 111.10296 * 306.16911 * 18 14 13 20 20 C 1.47560 * 111.00267 * 189.99815 * 11 10 9 21 21 H 0.96999 * 120.00484 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.46855 * 59.99590 * 9 7 2 23 23 H 1.09006 * 109.46657 * 300.00021 * 9 7 2 24 24 H 1.08999 * 109.47298 * 60.00095 * 10 9 7 25 25 H 1.08994 * 109.47268 * 300.00142 * 10 9 7 26 26 H 1.08999 * 109.18082 * 300.35985 * 12 11 10 27 27 H 1.08999 * 109.18330 * 59.64490 * 12 11 10 28 28 H 1.09003 * 109.04411 * 296.01911 * 13 12 11 29 29 H 1.08995 * 109.96300 * 175.47618 * 13 12 11 30 30 H 1.09003 * 110.17509 * 33.24098 * 15 14 13 31 31 H 1.08997 * 110.24217 * 271.45862 * 15 14 13 32 32 H 1.09000 * 110.34498 * 114.93037 * 16 15 14 33 33 H 1.09003 * 110.33828 * 237.17554 * 16 15 14 34 34 H 1.08993 * 110.92427 * 95.89458 * 17 16 15 35 35 H 1.09003 * 110.92420 * 219.54684 * 17 16 15 36 36 H 1.09000 * 109.85820 * 63.45590 * 20 11 10 37 37 H 1.09004 * 109.92210 * 302.46127 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5110 -4.9342 0.0012 12 6 0.3937 -4.8955 0.9494 13 6 -0.3660 -6.2173 0.9564 14 7 0.5806 -7.2851 1.2393 15 6 0.0607 -8.6457 1.3615 16 6 1.2244 -9.5815 0.9502 17 6 2.3671 -8.6281 0.5024 18 6 1.5938 -7.3456 0.1513 19 1 1.1166 -7.4323 -0.8248 20 6 2.4216 -6.0705 0.2403 21 1 -0.4851 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8896 23 1 0.6242 -2.5567 0.8904 24 1 2.8721 -3.6043 0.8905 25 1 2.8721 -3.6043 -0.8894 26 1 0.7802 -4.7054 1.9507 27 1 -0.2859 -4.0907 0.6694 28 1 -0.8175 -6.3732 -0.0234 29 1 -1.1408 -6.1971 1.7227 30 1 -0.7884 -8.7852 0.6923 31 1 -0.2360 -8.8450 2.3911 32 1 1.5447 -10.1839 1.8002 33 1 0.9203 -10.2232 0.1232 34 1 3.0672 -8.4495 1.3184 35 1 2.8834 -9.0232 -0.3725 36 1 2.8664 -5.9861 1.2319 37 1 3.2054 -6.0841 -0.5170 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000075581491.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:06 Heat of formation + Delta-G solvation = -13.424784 kcal Electronic energy + Delta-G solvation = -15832.812219 eV Core-core repulsion = 13415.691011 eV Total energy + Delta-G solvation = -2417.121208 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 224.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.00399 -37.93760 -35.19199 -33.75641 -32.33602 -30.07901 -29.14059 -26.53792 -24.40610 -24.03567 -21.91994 -21.31257 -20.70553 -18.61504 -16.96144 -16.72938 -16.57359 -16.10607 -15.86390 -15.62666 -15.16689 -14.61616 -14.19360 -13.85751 -13.58744 -13.49888 -13.05023 -12.86509 -12.53119 -12.42890 -12.18874 -12.06286 -12.01173 -11.91167 -11.63918 -11.41648 -11.18678 -11.15611 -10.56454 -9.34312 -9.15833 -8.21330 -6.32725 1.40017 1.40377 1.53937 2.39767 2.93397 3.01382 3.12259 3.65358 3.79219 3.99822 4.20417 4.26014 4.27308 4.32837 4.38471 4.52125 4.64072 4.68067 4.72137 4.74024 4.90200 4.94851 4.98558 5.01834 5.03531 5.09196 5.26243 5.34835 5.43055 5.62735 5.75998 5.92639 6.06786 6.22422 6.32415 6.35551 6.83551 7.36521 8.91005 Molecular weight = 224.16amu Principal moments of inertia in cm(-1) A = 0.068186 B = 0.005361 C = 0.005067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.541254 B = 5222.093916 C = 5524.703938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.060 0.940 9 C 0.030 3.970 10 C 0.081 3.919 11 N -0.558 5.558 12 C 0.068 3.932 13 C 0.074 3.926 14 N -0.557 5.557 15 C 0.047 3.953 16 C -0.119 4.119 17 C -0.108 4.108 18 C 0.069 3.931 19 H 0.052 0.948 20 C 0.072 3.928 21 H 0.264 0.736 22 H -0.007 1.007 23 H -0.001 1.001 24 H 0.018 0.982 25 H 0.066 0.934 26 H 0.018 0.982 27 H 0.064 0.936 28 H 0.034 0.966 29 H 0.088 0.912 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.033 0.967 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 -18.243 1.727 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.046 4.046 11 N -0.283 5.283 12 C -0.061 4.061 13 C -0.055 4.055 14 N -0.283 5.283 15 C -0.080 4.080 16 C -0.157 4.157 17 C -0.146 4.146 18 C -0.039 4.039 19 H 0.070 0.930 20 C -0.056 4.056 21 H 0.073 0.927 22 H 0.012 0.988 23 H 0.017 0.983 24 H 0.036 0.964 25 H 0.084 0.916 26 H 0.036 0.964 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.106 0.894 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.051 0.949 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.492 -18.069 1.758 18.325 hybrid contribution -0.125 1.270 0.069 1.278 sum 2.367 -16.799 1.827 17.063 Atomic orbital electron populations 1.70107 1.07814 1.27767 1.51473 1.25956 0.95759 1.03318 0.94526 0.85366 0.79047 0.78591 0.77830 1.18579 1.20244 1.20321 1.21648 0.93539 0.92252 1.50908 0.92221 1.19061 0.94288 0.92174 0.95163 1.21952 0.95740 0.87956 0.98942 1.61703 1.11519 1.03655 1.51403 1.21807 0.93626 0.97405 0.93227 1.21653 0.94136 0.89880 0.99799 1.62705 1.16428 1.05207 1.43927 1.22569 0.97091 0.86784 1.01549 1.22645 0.93858 0.97043 1.02139 1.22321 0.97374 0.92866 1.02054 1.22617 0.93402 0.94897 0.93021 0.92989 1.22063 0.94519 0.89236 0.99772 0.92714 0.98846 0.98262 0.96417 0.91605 0.96352 0.91740 0.94813 0.89374 0.94311 0.90029 0.89570 0.90091 0.90761 0.89180 0.94892 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.97 44.85 29.54 68.60 2.03 46.87 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 6 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 7 C -0.55 -31.83 9.11 25.60 0.23 -31.59 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.32 16 9 C 0.03 1.67 4.12 29.85 0.12 1.79 16 10 C 0.08 3.65 5.26 86.30 0.45 4.11 16 11 N -0.56 -21.80 4.78 -897.80 -4.29 -26.10 16 12 C 0.07 2.62 4.71 86.18 0.41 3.03 16 13 C 0.07 2.28 5.95 86.39 0.51 2.80 16 14 N -0.56 -15.28 4.67 -868.78 -4.06 -19.33 16 15 C 0.05 0.98 6.88 87.09 0.60 1.57 16 16 C -0.12 -1.89 6.99 32.07 0.22 -1.67 16 17 C -0.11 -2.02 6.65 31.70 0.21 -1.81 16 18 C 0.07 1.80 2.73 44.59 0.12 1.93 16 19 H 0.05 1.46 8.09 -2.39 -0.02 1.44 16 20 C 0.07 2.24 5.27 85.94 0.45 2.70 16 21 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 22 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 23 H 0.00 -0.05 6.34 -2.38 -0.02 -0.07 16 24 H 0.02 0.79 8.08 -2.39 -0.02 0.77 16 25 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 2.84 6.17 -2.39 -0.01 2.83 16 28 H 0.03 1.06 8.08 -2.39 -0.02 1.04 16 29 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.04 0.78 8.06 -2.39 -0.02 0.76 16 31 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.42 8.12 -2.39 -0.02 1.40 16 35 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -65.46 287.16 -1.23 -66.69 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: 1.01 Total: 5.61 kcal Atomic # 6 Polarization: -20.36 SS G_CDS: 3.80 Total: -16.55 kcal Atomic # 7 Polarization: -94.56 SS G_CDS: -8.06 Total: -102.62 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -65.46 -1.23 -66.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000075581491.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.266 kcal (2) G-P(sol) polarization free energy of solvation -65.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds